Wall clock time and date at job start Sat Apr 11 2020 06:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46889 * 2 1 4 4 C 1.50699 * 109.46841 * 119.99281 * 2 1 3 5 5 H 1.08004 * 120.00183 * 120.00502 * 4 2 1 6 6 C 1.37880 * 120.00542 * 300.00161 * 4 2 1 7 7 N 1.31515 * 119.99481 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00268 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46824 * 89.99939 * 8 6 4 10 10 H 1.48498 * 109.47101 * 209.99916 * 8 6 4 11 11 H 1.48500 * 109.47264 * 330.00010 * 8 6 4 12 12 N 1.46496 * 109.47146 * 239.99512 * 2 1 3 13 13 C 1.34768 * 120.00063 * 85.00042 * 12 2 1 14 14 O 1.21283 * 120.00182 * 0.02562 * 13 12 2 15 15 C 1.50704 * 120.00001 * 179.97438 * 13 12 2 16 16 H 1.08996 * 110.42530 * 302.31378 * 15 13 12 17 17 C 1.54912 * 110.36800 * 64.63001 * 15 13 12 18 18 C 1.55146 * 101.65144 * 155.89905 * 17 15 13 19 19 C 1.54325 * 103.01617 * 324.34604 * 18 17 15 20 20 N 1.47439 * 107.23699 * 22.28219 * 19 18 17 21 21 C 1.37847 * 110.99896 * 123.25979 * 20 19 18 22 22 N 1.32644 * 120.91024 * 239.85598 * 21 20 19 23 23 C 1.32334 * 121.49185 * 180.02562 * 22 21 20 24 24 N 1.31202 * 122.97193 * 359.97438 * 23 22 21 25 25 C 1.34116 * 120.46229 * 0.02562 * 24 23 22 26 26 C 1.40147 * 121.99195 * 179.97438 * 25 24 23 27 27 C 1.36315 * 119.58421 * 180.02562 * 26 25 24 28 28 C 1.39215 * 121.02849 * 0.02562 * 27 26 25 29 29 C 1.36380 * 120.89788 * 359.97438 * 28 27 26 30 30 C 1.39932 * 119.50635 * 359.97438 * 29 28 27 31 31 H 1.09003 * 109.46554 * 60.00581 * 1 2 3 32 32 H 1.08998 * 109.46925 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47060 * 300.00772 * 1 2 3 34 34 H 0.97003 * 119.99805 * 179.97438 * 7 6 4 35 35 H 0.97001 * 119.99538 * 264.99844 * 12 2 1 36 36 H 1.08995 * 110.99487 * 37.80771 * 17 15 13 37 37 H 1.08998 * 111.02085 * 273.99999 * 17 15 13 38 38 H 1.08999 * 110.70874 * 205.96302 * 18 17 15 39 39 H 1.09005 * 110.85612 * 82.79434 * 18 17 15 40 40 H 1.08999 * 109.88364 * 262.87387 * 19 18 17 41 41 H 1.09000 * 109.88799 * 141.69482 * 19 18 17 42 42 H 1.08000 * 118.51591 * 179.97438 * 23 22 21 43 43 H 1.08004 * 120.20660 * 0.02562 * 26 25 24 44 44 H 1.07995 * 119.48608 * 180.28308 * 27 26 25 45 45 H 1.07999 * 119.54518 * 180.02562 * 28 27 26 46 46 H 1.08002 * 120.24711 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6533 -1.5884 1.1316 6 6 1.6992 -0.2391 2.4828 7 7 0.9435 0.8304 2.6033 8 14 2.3224 -1.1192 4.0081 9 1 3.6304 -0.5436 4.4119 10 1 1.3444 -0.9485 5.1124 11 1 2.4880 -2.5650 3.7125 12 7 2.0184 -0.6907 -1.1961 13 6 2.1471 -0.0185 -2.3570 14 8 1.8591 1.1584 -2.4115 15 6 2.6500 -0.7289 -3.5873 16 1 3.6326 -1.1624 -3.4013 17 6 1.6489 -1.8282 -4.0222 18 6 1.9771 -1.9714 -5.5318 19 6 2.3154 -0.5257 -5.9526 20 7 2.7076 0.2040 -4.7329 21 6 3.9679 0.7463 -4.8655 22 7 4.9464 0.4067 -4.0369 23 6 6.1604 0.9206 -4.1533 24 7 6.4818 1.7897 -5.0821 25 6 5.5679 2.2023 -5.9728 26 6 5.8760 3.1295 -6.9774 27 6 4.9086 3.5152 -7.8569 28 6 3.6170 3.0027 -7.7732 29 6 3.2834 2.0989 -6.8079 30 6 4.2535 1.6813 -5.8900 31 1 -0.3632 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5140 0.8899 34 1 0.7089 1.1617 3.4843 35 1 2.2491 -1.6319 -1.1524 36 1 0.6201 -1.4995 -3.8758 37 1 1.8379 -2.7612 -3.4914 38 1 1.1109 -2.3401 -6.0813 39 1 2.8348 -2.6271 -5.6820 40 1 1.4400 -0.0555 -6.4007 41 1 3.1413 -0.5301 -6.6639 42 1 6.9210 0.6105 -3.4520 43 1 6.8737 3.5360 -7.0543 44 1 5.1490 4.2264 -8.6333 45 1 2.8692 3.3246 -8.4828 46 1 2.2780 1.7083 -6.7523 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000371018949.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:45 Heat of formation + Delta-G solvation = 50.769617 kcal Electronic energy + Delta-G solvation = -29705.867112 eV Core-core repulsion = 25788.874965 eV Total energy + Delta-G solvation = -3916.992147 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.75353 -39.79282 -37.92646 -37.63212 -34.67667 -34.30569 -32.39194 -31.90993 -31.14956 -29.97443 -29.68722 -28.22072 -25.22719 -24.95714 -24.29350 -23.05487 -22.05169 -21.48411 -20.67449 -19.33162 -18.53837 -18.17005 -17.42138 -17.23963 -16.15094 -15.56269 -15.33639 -15.22049 -14.98939 -14.62540 -14.38586 -14.25620 -14.12352 -13.95788 -13.55216 -13.19994 -12.88636 -12.62973 -12.59024 -12.35912 -12.25435 -11.94299 -11.80187 -11.57389 -11.43414 -11.15845 -11.03924 -10.94202 -10.90553 -10.72985 -10.63488 -10.27399 -10.20574 -9.53700 -9.32485 -9.19768 -9.01634 -8.80003 -8.50836 -8.10158 -7.83663 -6.09254 -4.18229 0.19562 0.66327 1.76231 2.87014 3.08452 3.26578 3.33039 3.34721 3.44812 3.95269 4.01298 4.11364 4.14829 4.30260 4.37537 4.49329 4.56711 4.64333 4.70338 4.79870 5.02209 5.09720 5.15219 5.19171 5.23600 5.26495 5.35112 5.52118 5.59270 5.65757 5.73285 5.74297 5.77828 5.97449 5.99988 6.17257 6.19830 6.22551 6.56640 6.84706 6.86353 6.99637 7.10874 7.18952 7.51830 7.61463 7.73499 7.96286 8.17318 8.18705 8.72837 8.83327 9.21358 9.49579 10.96806 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015494 B = 0.003008 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.726801 B = 9304.942564 C = 9981.323069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.268 3.732 3 H 0.046 0.954 4 C -0.532 4.532 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.901 3.099 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.708 5.708 13 C 0.517 3.483 14 O -0.538 6.538 15 C 0.050 3.950 16 H 0.116 0.884 17 C -0.120 4.120 18 C -0.138 4.138 19 C 0.049 3.951 20 N -0.439 5.439 21 C 0.412 3.588 22 N -0.573 5.573 23 C 0.335 3.665 24 N -0.539 5.539 25 C 0.176 3.824 26 C -0.113 4.113 27 C -0.076 4.076 28 C -0.139 4.139 29 C -0.059 4.059 30 C -0.169 4.169 31 H 0.014 0.986 32 H 0.026 0.974 33 H 0.089 0.911 34 H 0.264 0.736 35 H 0.387 0.613 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.096 0.904 41 H 0.069 0.931 42 H 0.195 0.805 43 H 0.138 0.862 44 H 0.131 0.869 45 H 0.129 0.871 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.992 -3.491 -22.893 23.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.166 3.834 3 H 0.064 0.936 4 C -0.570 4.570 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.522 5.522 8 Si 0.729 3.271 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.356 5.356 13 C 0.300 3.700 14 O -0.415 6.415 15 C -0.060 4.060 16 H 0.133 0.867 17 C -0.159 4.159 18 C -0.177 4.177 19 C -0.076 4.076 20 N -0.154 5.154 21 C 0.160 3.840 22 N -0.294 5.294 23 C 0.045 3.955 24 N -0.256 5.256 25 C 0.049 3.951 26 C -0.132 4.132 27 C -0.097 4.097 28 C -0.157 4.157 29 C -0.079 4.079 30 C -0.175 4.175 31 H 0.033 0.967 32 H 0.045 0.955 33 H 0.108 0.892 34 H 0.074 0.926 35 H 0.219 0.781 36 H 0.104 0.896 37 H 0.110 0.890 38 H 0.106 0.894 39 H 0.094 0.906 40 H 0.114 0.886 41 H 0.088 0.912 42 H 0.212 0.788 43 H 0.155 0.845 44 H 0.149 0.851 45 H 0.147 0.853 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 5.088 -2.327 -22.075 22.773 hybrid contribution 0.239 -0.956 0.503 1.107 sum 5.327 -3.283 -21.572 22.462 Atomic orbital electron populations 1.22069 0.98543 0.99010 1.00826 1.18693 0.90899 0.93902 0.79918 0.93611 1.21224 1.32292 1.13182 0.90322 0.92073 1.24892 0.94840 0.94977 0.99049 1.69910 1.35944 1.22492 1.23813 0.86453 0.78612 0.79832 0.82224 1.20572 1.21110 1.19834 1.46416 1.65570 1.13425 1.10217 1.19821 0.78778 0.87404 0.83952 1.90660 1.50361 1.15801 1.84721 1.22778 1.01943 0.91406 0.89881 0.86668 1.22748 0.99965 0.98030 0.95141 1.22814 1.02669 0.95549 0.96627 1.23074 1.01921 0.93144 0.89486 1.59544 1.18021 1.32654 1.05197 1.20299 0.87532 0.89093 0.87104 1.68237 1.01406 1.29804 1.29979 1.24688 0.91278 0.87203 0.92355 1.68812 1.35376 1.15425 1.05959 1.18864 0.88278 0.94268 0.93674 1.20684 1.00618 0.97504 0.94368 1.21016 0.92851 0.97995 0.97883 1.20929 0.96877 0.98397 0.99529 1.21056 0.98682 0.95670 0.92481 1.19018 0.96624 1.02033 0.99841 0.96730 0.95494 0.89231 0.92625 0.78123 0.89555 0.89033 0.89382 0.90609 0.88619 0.91237 0.78836 0.84458 0.85118 0.85262 0.84492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 9.26 37.16 0.34 -3.33 16 2 C 0.27 6.95 2.56 -69.08 -0.18 6.77 16 3 H 0.05 1.40 7.58 -51.93 -0.39 1.00 16 4 C -0.53 -14.28 8.73 -34.44 -0.30 -14.58 16 5 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -25.32 11.32 55.43 0.63 -24.69 16 8 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 10 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 12 N -0.71 -15.00 5.05 -54.93 -0.28 -15.28 16 13 C 0.52 10.72 7.15 -10.99 -0.08 10.64 16 14 O -0.54 -13.68 16.15 5.56 0.09 -13.59 16 15 C 0.05 0.76 2.50 -67.33 -0.17 0.60 16 16 H 0.12 1.74 6.60 -51.93 -0.34 1.40 16 17 C -0.12 -1.34 6.47 -24.59 -0.16 -1.50 16 18 C -0.14 -1.15 6.94 -24.90 -0.17 -1.32 16 19 C 0.05 0.49 5.04 -2.83 -0.01 0.47 16 20 N -0.44 -6.46 4.10 -163.32 -0.67 -7.13 16 21 C 0.41 6.48 6.17 -154.98 -0.96 5.52 16 22 N -0.57 -9.33 8.30 -13.55 -0.11 -9.45 16 23 C 0.34 4.94 12.22 -92.19 -1.13 3.81 16 24 N -0.54 -8.12 10.45 -12.65 -0.13 -8.25 16 25 C 0.18 2.52 6.61 -84.86 -0.56 1.96 16 26 C -0.11 -1.26 10.01 -39.56 -0.40 -1.66 16 27 C -0.08 -0.68 9.95 -39.91 -0.40 -1.08 16 28 C -0.14 -1.27 9.96 -39.89 -0.40 -1.67 16 29 C -0.06 -0.67 8.65 -39.62 -0.34 -1.01 16 30 C -0.17 -2.41 5.36 -106.68 -0.57 -2.98 16 31 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 34 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 35 H 0.39 7.03 8.54 -40.82 -0.35 6.68 16 36 H 0.09 1.05 8.05 -51.93 -0.42 0.63 16 37 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.10 0.81 7.34 -51.93 -0.38 0.42 16 41 H 0.07 0.64 6.89 -51.93 -0.36 0.28 16 42 H 0.20 2.23 8.06 -52.49 -0.42 1.80 16 43 H 0.14 1.31 8.06 -52.48 -0.42 0.89 16 44 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 45 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 46 H 0.14 1.40 5.87 -52.49 -0.31 1.09 16 LS Contribution 375.03 15.07 5.65 5.65 Total: -1.00 -35.07 375.03 -11.62 -46.69 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -6.21 Total: 7.86 kcal Atomic # 6 Polarization: 7.90 SS G_CDS: -5.57 Total: 2.33 kcal Atomic # 7 Polarization: -64.23 SS G_CDS: -0.56 Total: -64.79 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: 0.09 Total: -13.59 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.07 -11.62 -46.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000371018949.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.459 kcal (2) G-P(sol) polarization free energy of solvation -35.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds