Wall clock time and date at job start Sat Apr 11 2020 06:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34159 * 125.16345 * 2 1 4 4 C 1.37961 * 107.88774 * 180.02562 * 3 2 1 5 5 C 1.47290 * 126.80537 * 179.97438 * 4 3 2 6 6 O 1.21615 * 119.99815 * 129.84077 * 5 4 3 7 7 N 1.34767 * 120.00174 * 309.84020 * 5 4 3 8 8 C 1.46932 * 120.63177 * 184.01954 * 7 5 4 9 9 C 1.53626 * 108.54347 * 126.36711 * 8 7 5 10 10 C 1.53041 * 109.24282 * 54.85802 * 9 8 7 11 11 C 1.53039 * 109.53665 * 298.50786 * 10 9 8 12 12 H 1.08997 * 109.49739 * 301.41732 * 11 10 9 13 13 C 1.50694 * 109.49712 * 181.31715 * 11 10 9 14 14 H 1.07996 * 120.00415 * 0.16453 * 13 11 10 15 15 C 1.37878 * 120.00256 * 180.15895 * 13 11 10 16 16 N 1.31518 * 119.99881 * 0.02562 * 15 13 11 17 17 Si 1.86794 * 120.00402 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47122 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47501 * 120.00330 * 17 15 13 20 20 H 1.48502 * 109.47276 * 240.00222 * 17 15 13 21 21 C 1.46932 * 120.63262 * 4.29274 * 7 5 4 22 22 C 1.46598 * 106.38425 * 359.97438 * 4 3 2 23 23 C 1.48291 * 126.51388 * 180.02562 * 22 4 3 24 24 C 1.39802 * 120.54086 * 144.99946 * 23 22 4 25 25 C 1.38403 * 118.31175 * 179.97438 * 24 23 22 26 26 C 1.38325 * 119.28280 * 0.02562 * 25 24 23 27 27 N 1.31891 * 121.04216 * 359.97438 * 26 25 24 28 28 C 1.31741 * 121.85347 * 359.73201 * 27 26 25 29 29 N 1.31368 * 106.97530 * 0.02562 * 22 4 3 30 30 H 1.08996 * 109.47322 * 269.98374 * 1 2 3 31 31 H 1.08995 * 109.47406 * 29.98479 * 1 2 3 32 32 H 1.09001 * 109.47282 * 149.98235 * 1 2 3 33 33 H 1.08006 * 126.05227 * 359.97438 * 3 2 1 34 34 H 1.09000 * 109.58082 * 246.19893 * 8 7 5 35 35 H 1.08991 * 109.58455 * 6.62049 * 8 7 5 36 36 H 1.08999 * 109.63123 * 294.86148 * 9 8 7 37 37 H 1.08999 * 109.45302 * 174.73760 * 9 8 7 38 38 H 1.09002 * 109.45876 * 178.48857 * 10 9 8 39 39 H 1.08996 * 109.44867 * 58.52169 * 10 9 8 40 40 H 0.96996 * 119.99984 * 179.97438 * 16 15 13 41 41 H 1.08996 * 109.58268 * 353.37995 * 21 7 5 42 42 H 1.08998 * 109.58416 * 113.79776 * 21 7 5 43 43 H 1.08000 * 120.84594 * 359.95582 * 24 23 22 44 44 H 1.07992 * 120.36113 * 180.02562 * 25 24 23 45 45 H 1.08003 * 119.47729 * 179.97438 * 26 25 24 46 46 H 1.07995 * 119.70853 * 180.27049 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2376 1.0968 0.0000 4 6 3.5550 0.6871 -0.0006 5 6 4.7478 1.5511 -0.0013 6 8 5.6365 1.3615 0.8070 7 7 4.8545 2.5518 -0.8977 8 6 6.0754 3.3662 -0.9688 9 6 6.5893 3.3508 -2.4165 10 6 5.4709 3.8123 -3.3537 11 6 4.2877 2.8470 -3.2528 12 1 4.6157 1.8409 -3.5140 13 6 3.1999 3.2840 -4.1997 14 1 3.3392 4.1608 -4.8145 15 6 2.0268 2.5642 -4.2814 16 7 1.8568 1.4966 -3.5325 17 14 0.6787 3.1054 -5.4557 18 1 1.1139 4.3267 -6.1798 19 1 0.4087 2.0207 -6.4333 20 1 -0.5582 3.3989 -4.6880 21 6 3.7498 2.8531 -1.8184 22 6 3.5322 -0.7787 -0.0003 23 6 4.7101 -1.6795 -0.0002 24 6 4.6754 -2.8944 0.6906 25 6 5.8005 -3.6997 0.6594 26 6 6.9132 -3.2804 -0.0473 27 7 6.9167 -2.1286 -0.6897 28 6 5.8678 -1.3315 -0.6934 29 7 2.2699 -1.1427 -0.0002 30 1 -0.3634 -0.0003 1.0276 31 1 -0.3634 0.8901 -0.5136 32 1 -0.3634 -0.8898 -0.5141 33 1 1.8898 2.1193 -0.0004 34 1 5.8498 4.3896 -0.6691 35 1 6.8328 2.9478 -0.3061 36 1 6.8956 2.3399 -2.6855 37 1 7.4409 4.0251 -2.5066 38 1 5.8401 3.8283 -4.3792 39 1 5.1482 4.8135 -3.0682 40 1 1.0314 0.9904 -3.5896 41 1 2.9724 2.0959 -1.7164 42 1 3.3385 3.8355 -1.5866 43 1 3.7930 -3.1968 1.2351 44 1 5.8097 -4.6452 1.1811 45 1 7.7931 -3.9062 -0.0735 46 1 5.9070 -0.3978 -1.2348 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597911079.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:37 Heat of formation + Delta-G solvation = 77.050054 kcal Electronic energy + Delta-G solvation = -30598.430108 eV Core-core repulsion = 26682.577567 eV Total energy + Delta-G solvation = -3915.852541 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.91428 -39.61607 -38.96853 -36.57603 -33.75555 -33.18885 -32.30634 -31.94314 -30.83017 -30.23306 -29.37077 -26.64116 -25.13960 -24.74678 -23.47945 -23.36612 -22.02116 -21.30759 -19.96311 -19.62931 -18.43976 -16.95154 -16.67579 -16.43122 -16.02657 -15.85902 -15.40038 -15.02756 -14.81535 -14.64296 -14.27349 -13.77769 -13.62884 -13.60763 -13.16668 -12.94746 -12.91201 -12.70333 -12.62895 -12.48095 -12.28249 -12.11144 -11.87389 -11.55479 -11.11679 -10.98007 -10.63634 -10.55508 -10.43584 -10.23861 -10.02214 -9.88883 -9.49422 -9.42311 -9.23678 -9.17095 -8.99888 -8.59668 -8.45277 -7.98491 -7.71668 -6.15319 -4.20920 1.04029 1.44899 2.11362 2.64169 2.71704 3.16781 3.27203 3.31427 3.47441 3.92261 4.11636 4.30492 4.44367 4.74153 4.83298 5.00299 5.09710 5.15108 5.15503 5.23555 5.25869 5.41747 5.54864 5.55782 5.63251 5.71301 5.78034 5.85584 5.91838 6.01207 6.12520 6.17539 6.30023 6.38913 6.41450 6.50742 6.63649 6.67103 6.82690 6.87596 6.91890 6.95750 7.15784 7.32490 7.47745 7.73933 7.87593 7.89267 8.15164 8.16175 8.34420 8.81907 8.90482 9.44098 10.89560 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010012 B = 0.004895 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2796.031594 B = 5718.909542 C = 6992.510579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.355 5.355 3 C 0.126 3.874 4 C -0.261 4.261 5 C 0.591 3.409 6 O -0.561 6.561 7 N -0.601 5.601 8 C 0.115 3.885 9 C -0.133 4.133 10 C -0.111 4.111 11 C 0.039 3.961 12 H 0.031 0.969 13 C -0.511 4.511 14 H 0.058 0.942 15 C 0.064 3.936 16 N -0.884 5.884 17 Si 0.889 3.111 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.285 1.285 21 C 0.096 3.904 22 C 0.155 3.845 23 C -0.051 4.051 24 C -0.051 4.051 25 C -0.180 4.180 26 C 0.098 3.902 27 N -0.482 5.482 28 C 0.148 3.852 29 N -0.283 5.283 30 H 0.071 0.929 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.180 0.820 34 H 0.058 0.942 35 H 0.081 0.919 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.050 0.950 39 H 0.049 0.951 40 H 0.258 0.742 41 H 0.124 0.876 42 H 0.043 0.957 43 H 0.136 0.864 44 H 0.135 0.865 45 H 0.154 0.846 46 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.108 -4.309 8.434 9.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.135 5.135 3 C -0.022 4.022 4 C -0.275 4.275 5 C 0.379 3.621 6 O -0.441 6.441 7 N -0.332 5.332 8 C -0.008 4.008 9 C -0.171 4.171 10 C -0.148 4.148 11 C 0.020 3.980 12 H 0.049 0.951 13 C -0.549 4.549 14 H 0.077 0.923 15 C -0.138 4.138 16 N -0.523 5.523 17 Si 0.717 3.283 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.025 4.025 22 C -0.013 4.013 23 C -0.055 4.055 24 C -0.078 4.078 25 C -0.200 4.200 26 C -0.060 4.060 27 N -0.190 5.190 28 C -0.011 4.011 29 N -0.103 5.103 30 H 0.090 0.910 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.197 0.803 34 H 0.077 0.923 35 H 0.100 0.900 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.142 0.858 42 H 0.061 0.939 43 H 0.154 0.846 44 H 0.153 0.847 45 H 0.172 0.828 46 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 0.161 -5.231 8.420 9.914 hybrid contribution -1.377 0.869 -0.431 1.684 sum -1.216 -4.362 7.989 9.183 Atomic orbital electron populations 1.21896 0.74018 1.05184 1.02802 1.47810 1.06703 1.03059 1.55880 1.22699 0.89971 0.93147 0.96353 1.20945 0.92988 0.92243 1.21365 1.17285 0.85060 0.79479 0.80301 1.90712 1.41964 1.71939 1.39504 1.48395 1.17818 1.31779 1.35210 1.21572 0.87366 0.94511 0.97328 1.22019 0.98455 1.01480 0.95189 1.21626 0.95978 0.99666 0.97576 1.18960 0.92181 0.95269 0.91626 0.95128 1.21178 1.00036 1.11769 1.21941 0.92329 1.24977 0.98352 0.94731 0.95692 1.69889 1.26036 1.16843 1.39547 0.86582 0.81799 0.78724 0.81179 1.19791 1.21111 1.21145 1.22594 0.88964 1.01181 0.89729 1.21249 0.90715 0.90453 0.98927 1.18695 0.92632 0.93967 1.00245 1.21590 0.98343 0.92084 0.95793 1.22001 0.94469 1.01295 1.02229 1.22819 0.97654 0.92874 0.92626 1.67719 1.28079 1.04469 1.18730 1.22802 0.86830 0.97716 0.93766 1.77146 1.00930 1.07340 1.24922 0.91008 0.88966 0.89201 0.80263 0.92339 0.90029 0.92070 0.92238 0.93079 0.93253 0.93194 0.85828 0.93856 0.84635 0.84715 0.82831 0.82829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.16 11.40 59.85 0.68 1.84 16 2 N -0.36 -5.77 3.95 -67.65 -0.27 -6.04 16 3 C 0.13 2.19 9.09 -16.64 -0.15 2.04 16 4 C -0.26 -5.14 5.28 -102.95 -0.54 -5.68 16 5 C 0.59 12.21 5.95 -12.58 -0.07 12.13 16 6 O -0.56 -12.59 16.05 5.26 0.08 -12.51 16 7 N -0.60 -11.92 2.97 -173.82 -0.52 -12.44 16 8 C 0.12 2.03 6.45 -3.48 -0.02 2.01 16 9 C -0.13 -2.29 6.10 -26.38 -0.16 -2.45 16 10 C -0.11 -2.16 5.10 -26.69 -0.14 -2.29 16 11 C 0.04 0.89 2.25 -91.66 -0.21 0.68 16 12 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 13 C -0.51 -12.72 8.56 -34.44 -0.29 -13.01 16 14 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 15 C 0.06 1.59 5.30 -17.82 -0.09 1.49 16 16 N -0.88 -22.15 11.39 55.43 0.63 -21.52 16 17 Si 0.89 19.54 29.54 -169.99 -5.02 14.52 16 18 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.29 -6.15 7.11 56.52 0.40 -5.75 16 21 C 0.10 2.04 4.87 -3.71 -0.02 2.02 16 22 C 0.15 2.99 6.96 -80.56 -0.56 2.42 16 23 C -0.05 -0.93 5.85 -104.76 -0.61 -1.54 16 24 C -0.05 -0.75 9.92 -38.94 -0.39 -1.14 16 25 C -0.18 -2.25 10.10 -39.49 -0.40 -2.64 16 26 C 0.10 1.33 11.17 -17.49 -0.20 1.14 16 27 N -0.48 -8.39 10.35 -12.96 -0.13 -8.53 16 28 C 0.15 2.80 9.95 -17.18 -0.17 2.63 16 29 N -0.28 -5.17 12.48 34.57 0.43 -4.74 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.09 0.95 8.13 -51.93 -0.42 0.53 16 32 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.18 2.74 7.62 -52.48 -0.40 2.34 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.08 1.45 7.03 -51.93 -0.36 1.09 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.26 6.27 8.31 -40.82 -0.34 5.93 16 41 H 0.12 2.72 2.70 -51.93 -0.14 2.58 16 42 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 43 H 0.14 1.77 8.06 -52.49 -0.42 1.35 16 44 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 45 H 0.15 1.54 8.06 -52.48 -0.42 1.11 16 46 H 0.15 3.17 6.89 -52.49 -0.36 2.81 16 LS Contribution 378.23 15.07 5.70 5.70 Total: -1.00 -30.68 378.23 -8.74 -39.43 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -6.30 Total: 6.48 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: -3.35 Total: -0.35 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: 0.15 Total: -53.26 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: 0.08 Total: -12.51 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.02 Total: 14.52 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.68 -8.74 -39.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597911079.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.476 kcal (2) G-P(sol) polarization free energy of solvation -30.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds