Wall clock time and date at job start Sat Apr 11 2020 06:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34159 * 125.16345 * 2 1 4 4 C 1.37961 * 107.88774 * 180.02562 * 3 2 1 5 5 C 1.47290 * 126.80537 * 179.97438 * 4 3 2 6 6 O 1.21615 * 119.99815 * 129.84077 * 5 4 3 7 7 N 1.34767 * 120.00174 * 309.84020 * 5 4 3 8 8 C 1.46932 * 120.63177 * 184.01954 * 7 5 4 9 9 C 1.53626 * 108.54347 * 126.36711 * 8 7 5 10 10 C 1.53041 * 109.24282 * 54.85802 * 9 8 7 11 11 C 1.53039 * 109.53665 * 298.50786 * 10 9 8 12 12 H 1.08997 * 109.49739 * 301.41732 * 11 10 9 13 13 C 1.50694 * 109.49712 * 181.31715 * 11 10 9 14 14 H 1.07996 * 120.00415 * 0.16453 * 13 11 10 15 15 C 1.37878 * 120.00256 * 180.15895 * 13 11 10 16 16 N 1.31518 * 119.99881 * 0.02562 * 15 13 11 17 17 Si 1.86794 * 120.00402 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47122 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47501 * 120.00330 * 17 15 13 20 20 H 1.48502 * 109.47276 * 240.00222 * 17 15 13 21 21 C 1.46932 * 120.63262 * 4.29274 * 7 5 4 22 22 C 1.46598 * 106.38425 * 359.97438 * 4 3 2 23 23 C 1.48291 * 126.51388 * 180.02562 * 22 4 3 24 24 C 1.39802 * 120.54086 * 144.99946 * 23 22 4 25 25 C 1.38403 * 118.31175 * 179.97438 * 24 23 22 26 26 C 1.38325 * 119.28280 * 0.02562 * 25 24 23 27 27 N 1.31891 * 121.04216 * 359.97438 * 26 25 24 28 28 C 1.31741 * 121.85347 * 359.73201 * 27 26 25 29 29 N 1.31368 * 106.97530 * 0.02562 * 22 4 3 30 30 H 1.08996 * 109.47322 * 269.98374 * 1 2 3 31 31 H 1.08995 * 109.47406 * 29.98479 * 1 2 3 32 32 H 1.09001 * 109.47282 * 149.98235 * 1 2 3 33 33 H 1.08006 * 126.05227 * 359.97438 * 3 2 1 34 34 H 1.09000 * 109.58082 * 246.19893 * 8 7 5 35 35 H 1.08991 * 109.58455 * 6.62049 * 8 7 5 36 36 H 1.08999 * 109.63123 * 294.86148 * 9 8 7 37 37 H 1.08999 * 109.45302 * 174.73760 * 9 8 7 38 38 H 1.09002 * 109.45876 * 178.48857 * 10 9 8 39 39 H 1.08996 * 109.44867 * 58.52169 * 10 9 8 40 40 H 0.96996 * 119.99984 * 179.97438 * 16 15 13 41 41 H 1.08996 * 109.58268 * 353.37995 * 21 7 5 42 42 H 1.08998 * 109.58416 * 113.79776 * 21 7 5 43 43 H 1.08000 * 120.84594 * 359.95582 * 24 23 22 44 44 H 1.07992 * 120.36113 * 180.02562 * 25 24 23 45 45 H 1.08003 * 119.47729 * 179.97438 * 26 25 24 46 46 H 1.07995 * 119.70853 * 180.27049 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2376 1.0968 0.0000 4 6 3.5550 0.6871 -0.0006 5 6 4.7478 1.5511 -0.0013 6 8 5.6365 1.3615 0.8070 7 7 4.8545 2.5518 -0.8977 8 6 6.0754 3.3662 -0.9688 9 6 6.5893 3.3508 -2.4165 10 6 5.4709 3.8123 -3.3537 11 6 4.2877 2.8470 -3.2528 12 1 4.6157 1.8409 -3.5140 13 6 3.1999 3.2840 -4.1997 14 1 3.3392 4.1608 -4.8145 15 6 2.0268 2.5642 -4.2814 16 7 1.8568 1.4966 -3.5325 17 14 0.6787 3.1054 -5.4557 18 1 1.1139 4.3267 -6.1798 19 1 0.4087 2.0207 -6.4333 20 1 -0.5582 3.3989 -4.6880 21 6 3.7498 2.8531 -1.8184 22 6 3.5322 -0.7787 -0.0003 23 6 4.7101 -1.6795 -0.0002 24 6 4.6754 -2.8944 0.6906 25 6 5.8005 -3.6997 0.6594 26 6 6.9132 -3.2804 -0.0473 27 7 6.9167 -2.1286 -0.6897 28 6 5.8678 -1.3315 -0.6934 29 7 2.2699 -1.1427 -0.0002 30 1 -0.3634 -0.0003 1.0276 31 1 -0.3634 0.8901 -0.5136 32 1 -0.3634 -0.8898 -0.5141 33 1 1.8898 2.1193 -0.0004 34 1 5.8498 4.3896 -0.6691 35 1 6.8328 2.9478 -0.3061 36 1 6.8956 2.3399 -2.6855 37 1 7.4409 4.0251 -2.5066 38 1 5.8401 3.8283 -4.3792 39 1 5.1482 4.8135 -3.0682 40 1 1.0314 0.9904 -3.5896 41 1 2.9724 2.0959 -1.7164 42 1 3.3385 3.8355 -1.5866 43 1 3.7930 -3.1968 1.2351 44 1 5.8097 -4.6452 1.1811 45 1 7.7931 -3.9062 -0.0735 46 1 5.9070 -0.3978 -1.2348 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597911079.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:36 Heat of formation + Delta-G solvation = 59.093178 kcal Electronic energy + Delta-G solvation = -30599.208776 eV Core-core repulsion = 26682.577567 eV Total energy + Delta-G solvation = -3916.631210 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.27028 -40.83168 -40.52180 -38.23120 -35.04757 -34.95765 -33.82229 -33.17411 -32.05607 -31.79575 -30.88777 -27.83030 -26.95639 -26.26832 -24.77007 -24.57933 -23.53009 -22.79370 -21.39118 -21.10787 -19.93091 -18.43667 -18.19086 -17.91955 -17.47878 -17.16203 -16.76889 -16.47482 -16.29268 -16.07465 -15.78064 -15.23894 -14.98918 -14.84945 -14.67498 -14.57440 -14.20537 -14.09818 -13.97092 -13.70429 -13.62087 -13.46347 -13.36777 -12.87726 -12.79831 -12.65873 -12.24971 -12.22308 -12.01932 -11.80986 -11.63319 -11.28759 -11.07013 -10.87479 -10.74939 -10.58880 -10.48744 -10.44258 -9.82853 -9.44773 -9.22894 -8.05049 -6.17909 -0.18490 0.26954 0.74021 1.26928 1.41791 1.47858 1.48944 1.56233 1.94938 2.41269 2.48446 2.87101 3.17024 3.23203 3.52499 3.58299 3.89776 3.93923 3.97674 4.01656 4.14367 4.16398 4.22803 4.37511 4.44507 4.48219 4.56990 4.61681 4.63303 4.69571 4.72799 4.75633 4.86068 4.90635 5.04315 5.09010 5.21146 5.23991 5.27436 5.30242 5.33717 5.62182 5.70393 5.73259 5.91361 5.94319 6.04331 6.34436 6.50672 6.64584 6.89571 6.95168 7.30844 7.49560 8.97915 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010012 B = 0.004895 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2796.031594 B = 5718.909542 C = 6992.510579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.350 5.350 3 C 0.131 3.869 4 C -0.297 4.297 5 C 0.592 3.408 6 O -0.586 6.586 7 N -0.602 5.602 8 C 0.111 3.889 9 C -0.124 4.124 10 C -0.105 4.105 11 C 0.039 3.961 12 H -0.016 1.016 13 C -0.531 4.531 14 H 0.054 0.946 15 C 0.029 3.971 16 N -0.897 5.897 17 Si 0.946 3.054 18 H -0.274 1.274 19 H -0.292 1.292 20 H -0.273 1.273 21 C 0.107 3.893 22 C 0.140 3.860 23 C -0.076 4.076 24 C -0.055 4.055 25 C -0.158 4.158 26 C 0.095 3.905 27 N -0.508 5.508 28 C 0.122 3.878 29 N -0.293 5.293 30 H 0.103 0.897 31 H 0.104 0.896 32 H 0.095 0.905 33 H 0.198 0.802 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.041 0.959 37 H 0.095 0.905 38 H 0.048 0.952 39 H 0.060 0.940 40 H 0.259 0.741 41 H 0.117 0.883 42 H 0.048 0.952 43 H 0.153 0.847 44 H 0.185 0.815 45 H 0.196 0.804 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.659 -4.925 9.377 10.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.129 5.129 3 C -0.019 4.019 4 C -0.312 4.312 5 C 0.381 3.619 6 O -0.468 6.468 7 N -0.333 5.333 8 C -0.011 4.011 9 C -0.162 4.162 10 C -0.143 4.143 11 C 0.020 3.980 12 H 0.002 0.998 13 C -0.570 4.570 14 H 0.072 0.928 15 C -0.172 4.172 16 N -0.536 5.536 17 Si 0.773 3.227 18 H -0.199 1.199 19 H -0.219 1.219 20 H -0.199 1.199 21 C -0.015 4.015 22 C -0.027 4.027 23 C -0.080 4.080 24 C -0.082 4.082 25 C -0.177 4.177 26 C -0.062 4.062 27 N -0.217 5.217 28 C -0.036 4.036 29 N -0.115 5.115 30 H 0.122 0.878 31 H 0.122 0.878 32 H 0.114 0.886 33 H 0.215 0.785 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.060 0.940 37 H 0.114 0.886 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.135 0.865 42 H 0.066 0.934 43 H 0.171 0.829 44 H 0.202 0.798 45 H 0.212 0.788 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.625 -5.836 9.357 11.046 hybrid contribution -1.133 0.955 -0.737 1.655 sum -1.759 -4.881 8.620 10.061 Atomic orbital electron populations 1.22315 0.71199 1.06072 1.05193 1.48229 1.08201 1.02209 1.54235 1.22922 0.89494 0.94138 0.95314 1.21077 0.93588 0.92763 1.23729 1.17456 0.85171 0.79357 0.79914 1.90668 1.43012 1.72552 1.40616 1.48414 1.18214 1.31999 1.34664 1.21749 0.86549 0.95275 0.97500 1.21949 0.98801 1.01188 0.94251 1.21533 0.95383 0.99249 0.98127 1.18876 0.93213 0.93531 0.92421 0.99756 1.21395 1.00928 1.11956 1.22715 0.92799 1.25564 0.99977 0.94771 0.96876 1.70006 1.26320 1.17161 1.40073 0.85701 0.79867 0.77839 0.79307 1.19864 1.21908 1.19886 1.22337 0.89125 1.01079 0.88920 1.21538 0.91462 0.90623 0.99115 1.18834 0.92072 0.95494 1.01584 1.21902 0.99984 0.91057 0.95222 1.22511 0.92576 1.02171 1.00430 1.23584 0.99585 0.91754 0.91291 1.67657 1.27818 1.06008 1.20188 1.22361 0.88289 0.97533 0.95404 1.77064 1.00746 1.08272 1.25369 0.87838 0.87764 0.88634 0.78549 0.90053 0.90343 0.93986 0.88636 0.93340 0.92091 0.93163 0.86504 0.93353 0.82912 0.79776 0.78763 0.86356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.91 11.40 127.77 1.46 3.37 16 2 N -0.35 -11.25 3.95 -367.94 -1.45 -12.70 16 3 C 0.13 4.60 9.09 84.27 0.77 5.37 16 4 C -0.30 -12.18 5.28 -18.78 -0.10 -12.27 16 5 C 0.59 25.63 5.95 86.63 0.52 26.14 16 6 O -0.59 -27.58 16.05 -4.08 -0.07 -27.65 16 7 N -0.60 -24.69 2.97 -822.10 -2.44 -27.13 16 8 C 0.11 3.95 6.45 86.51 0.56 4.50 16 9 C -0.12 -4.26 6.10 30.82 0.19 -4.07 16 10 C -0.11 -4.13 5.10 30.62 0.16 -3.97 16 11 C 0.04 1.84 2.25 -11.46 -0.03 1.82 16 12 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 13 C -0.53 -26.90 8.56 25.60 0.22 -26.68 16 14 H 0.05 2.72 7.74 -2.91 -0.02 2.69 16 15 C 0.03 1.42 5.30 84.65 0.45 1.87 16 16 N -0.90 -45.50 11.39 21.45 0.24 -45.26 16 17 Si 0.95 39.96 29.54 68.60 2.03 41.98 16 18 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 19 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 20 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 21 C 0.11 4.64 4.87 86.36 0.42 5.06 16 22 C 0.14 5.61 6.96 44.07 0.31 5.92 16 23 C -0.08 -2.84 5.85 -19.96 -0.12 -2.95 16 24 C -0.05 -1.56 9.92 22.69 0.23 -1.34 16 25 C -0.16 -3.47 10.10 22.33 0.23 -3.25 16 26 C 0.10 2.42 11.17 84.70 0.95 3.36 16 27 N -0.51 -18.09 10.35 -194.91 -2.02 -20.11 16 28 C 0.12 4.92 9.95 84.97 0.85 5.77 16 29 N -0.29 -10.81 12.48 -44.53 -0.56 -11.37 16 30 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.10 1.95 8.13 -2.39 -0.02 1.93 16 32 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.20 5.98 7.62 -2.91 -0.02 5.96 16 34 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 35 H 0.08 2.84 7.03 -2.39 -0.02 2.83 16 36 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.10 2.61 8.14 -2.39 -0.02 2.60 16 38 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.06 2.24 8.14 -2.39 -0.02 2.23 16 40 H 0.26 12.61 8.31 -92.71 -0.77 11.84 16 41 H 0.12 5.27 2.70 -2.39 -0.01 5.27 16 42 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 43 H 0.15 3.74 8.06 -2.91 -0.02 3.71 16 44 H 0.18 2.22 8.06 -2.91 -0.02 2.20 16 45 H 0.20 3.19 8.06 -2.91 -0.02 3.17 16 46 H 0.12 5.45 6.89 -2.91 -0.02 5.43 16 Total: -1.00 -70.10 378.23 3.77 -66.32 By element: Atomic # 1 Polarization: 26.26 SS G_CDS: 1.00 Total: 27.26 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: 7.04 Total: 8.65 kcal Atomic # 7 Polarization: -110.34 SS G_CDS: -6.22 Total: -116.56 kcal Atomic # 8 Polarization: -27.58 SS G_CDS: -0.07 Total: -27.65 kcal Atomic # 14 Polarization: 39.96 SS G_CDS: 2.03 Total: 41.98 kcal Total: -70.10 3.77 -66.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597911079.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.418 kcal (2) G-P(sol) polarization free energy of solvation -70.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds