Wall clock time and date at job start Sat Apr 11 2020 06:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34157 * 125.16214 * 2 1 4 4 C 1.37964 * 107.88904 * 180.17917 * 3 2 1 5 5 C 1.47287 * 126.80997 * 179.89434 * 4 3 2 6 6 O 1.21622 * 119.99842 * 138.83647 * 5 4 3 7 7 N 1.34772 * 120.00070 * 318.83071 * 5 4 3 8 8 C 1.46928 * 120.63108 * 354.50387 * 7 5 4 9 9 C 1.53184 * 108.77805 * 233.60882 * 8 7 5 10 10 C 1.53039 * 109.31574 * 305.36446 * 9 8 7 11 11 C 1.53037 * 109.53521 * 61.36730 * 10 9 8 12 12 H 1.08997 * 109.50515 * 58.61654 * 11 10 9 13 13 C 1.50702 * 109.50117 * 178.68446 * 11 10 9 14 14 H 1.08007 * 119.99711 * 359.93238 * 13 11 10 15 15 C 1.37874 * 120.00356 * 179.65698 * 13 11 10 16 16 N 1.31510 * 120.00030 * 0.27390 * 15 13 11 17 17 Si 1.86798 * 119.99942 * 180.27617 * 15 13 11 18 18 H 1.48499 * 109.47318 * 59.99721 * 17 15 13 19 19 H 1.48499 * 109.47313 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47370 * 300.00006 * 17 15 13 21 21 C 1.46936 * 120.60403 * 174.53058 * 7 5 4 22 22 C 1.46597 * 106.37903 * 359.63242 * 4 3 2 23 23 C 1.48294 * 126.50992 * 180.25088 * 22 4 3 24 24 C 1.39813 * 120.54171 * 144.72097 * 23 22 4 25 25 C 1.38404 * 118.30624 * 179.73199 * 24 23 22 26 26 C 1.38320 * 119.28813 * 0.53941 * 25 24 23 27 27 N 1.31884 * 121.03721 * 359.72370 * 26 25 24 28 28 C 1.31739 * 121.86127 * 359.97438 * 27 26 25 29 29 N 1.31359 * 106.97465 * 0.22168 * 22 4 3 30 30 H 1.09001 * 109.46969 * 270.26208 * 1 2 3 31 31 H 1.09000 * 109.47114 * 30.25492 * 1 2 3 32 32 H 1.08998 * 109.46932 * 150.25574 * 1 2 3 33 33 H 1.08001 * 126.06153 * 0.03650 * 3 2 1 34 34 H 1.09006 * 109.58187 * 113.82132 * 8 7 5 35 35 H 1.09000 * 109.58740 * 353.40361 * 8 7 5 36 36 H 1.09001 * 109.49859 * 185.41287 * 9 8 7 37 37 H 1.09005 * 109.52535 * 65.33531 * 9 8 7 38 38 H 1.09001 * 109.46198 * 301.34586 * 10 9 8 39 39 H 1.08997 * 109.46447 * 181.38134 * 10 9 8 40 40 H 0.97004 * 120.00009 * 180.02562 * 16 15 13 41 41 H 1.08996 * 109.61809 * 6.61568 * 21 7 5 42 42 H 1.09002 * 109.55918 * 246.18753 * 21 7 5 43 43 H 1.08000 * 120.84247 * 359.97438 * 24 23 22 44 44 H 1.08002 * 120.35204 * 180.26302 * 25 24 23 45 45 H 1.07995 * 119.47771 * 179.74665 * 26 25 24 46 46 H 1.08000 * 119.70710 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2376 1.0968 0.0000 4 6 3.5550 0.6871 -0.0041 5 6 4.7478 1.5511 -0.0078 6 8 5.7076 1.2656 0.6825 7 7 4.7758 2.6580 -0.7761 8 6 3.6761 2.9526 -1.7049 9 6 4.2584 3.1738 -3.1043 10 6 5.3340 4.2605 -3.0391 11 6 6.4640 3.8070 -2.1120 12 1 6.8859 2.8729 -2.4825 13 6 7.5378 4.8637 -2.0736 14 1 7.4264 5.7681 -2.6534 15 6 8.6598 4.6785 -1.2940 16 7 8.7954 3.5773 -0.5879 17 14 9.9871 5.9917 -1.2405 18 1 9.4064 7.2624 -0.7373 19 1 11.0798 5.5545 -0.3348 20 1 10.5303 6.2025 -2.6064 21 6 5.9073 3.5924 -0.7010 22 6 3.5322 -0.7787 0.0023 23 6 4.7102 -1.6794 0.0062 24 6 4.6776 -2.8888 0.7070 25 6 5.8009 -3.6966 0.6746 26 6 6.9135 -3.2803 -0.0340 27 7 6.9168 -2.1312 -0.6811 28 6 5.8696 -1.3319 -0.6842 29 7 2.2700 -1.1425 0.0047 30 1 -0.3633 0.0047 1.0277 31 1 -0.3633 0.8877 -0.5178 32 1 -0.3633 -0.8923 -0.5099 33 1 1.8900 2.1193 0.0006 34 1 3.1544 3.8528 -1.3796 35 1 2.9813 2.1130 -1.7266 36 1 3.4652 3.4873 -3.7831 37 1 4.7006 2.2454 -3.4659 38 1 4.8965 5.1819 -2.6547 39 1 5.7328 4.4372 -4.0380 40 1 9.5846 3.4471 -0.0391 41 1 6.6846 3.1751 -0.0609 42 1 5.5677 4.5447 -0.2935 43 1 3.7967 -3.1868 1.2563 44 1 5.8103 -4.6398 1.2007 45 1 7.7932 -3.9063 -0.0579 46 1 5.9105 -0.3983 -1.2258 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597911080.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:41 Heat of formation + Delta-G solvation = 81.808328 kcal Electronic energy + Delta-G solvation = -29974.714737 eV Core-core repulsion = 26059.068530 eV Total energy + Delta-G solvation = -3915.646207 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.29099 -39.70082 -38.97113 -36.53565 -34.04641 -33.39834 -32.17248 -31.78616 -30.99709 -30.51247 -29.46965 -26.97591 -25.04780 -24.86225 -23.51768 -23.44478 -21.83889 -21.70530 -20.26686 -19.64822 -18.51746 -17.11409 -16.82302 -16.40159 -16.15694 -15.87806 -15.65667 -15.21304 -14.90645 -14.50062 -14.30815 -13.89659 -13.71656 -13.61517 -13.34814 -13.08495 -13.00551 -12.94240 -12.77601 -12.58719 -12.50611 -12.09050 -11.83013 -11.68171 -10.98669 -10.94540 -10.87109 -10.49151 -10.42119 -10.19192 -10.12818 -9.84018 -9.54891 -9.35125 -9.25358 -9.08452 -8.91580 -8.73992 -8.37117 -8.30031 -7.67190 -5.92597 -4.02105 0.90943 1.41476 1.63031 2.20867 2.40957 3.35754 3.42351 3.43264 3.53287 3.84146 4.02944 4.19028 4.44916 4.48334 4.61913 4.78608 4.83729 4.91499 5.02815 5.08766 5.10795 5.21124 5.34421 5.36474 5.37977 5.48707 5.53028 5.64548 5.69973 5.90980 5.98271 6.08295 6.20195 6.28313 6.32975 6.34406 6.63788 6.68861 6.73219 6.81139 6.89571 7.01912 7.20565 7.34883 7.46325 7.70478 7.93726 8.06129 8.17152 8.32229 8.44821 8.95655 9.02514 9.63300 11.12144 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010806 B = 0.004068 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2590.480054 B = 6880.546609 C = 8790.533408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.369 5.369 3 C 0.091 3.909 4 C -0.257 4.257 5 C 0.577 3.423 6 O -0.525 6.525 7 N -0.601 5.601 8 C 0.104 3.896 9 C -0.133 4.133 10 C -0.110 4.110 11 C 0.041 3.959 12 H 0.030 0.970 13 C -0.524 4.524 14 H 0.056 0.944 15 C 0.064 3.936 16 N -0.876 5.876 17 Si 0.890 3.110 18 H -0.278 1.278 19 H -0.287 1.287 20 H -0.278 1.278 21 C 0.114 3.886 22 C 0.162 3.838 23 C -0.068 4.068 24 C -0.048 4.048 25 C -0.183 4.183 26 C 0.105 3.895 27 N -0.477 5.477 28 C 0.160 3.840 29 N -0.285 5.285 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.186 0.814 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.048 0.952 39 H 0.050 0.950 40 H 0.264 0.736 41 H 0.125 0.875 42 H 0.041 0.959 43 H 0.134 0.866 44 H 0.136 0.864 45 H 0.156 0.844 46 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.914 -9.958 0.951 20.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.149 5.149 3 C -0.056 4.056 4 C -0.272 4.272 5 C 0.363 3.637 6 O -0.402 6.402 7 N -0.334 5.334 8 C -0.020 4.020 9 C -0.172 4.172 10 C -0.148 4.148 11 C 0.021 3.979 12 H 0.048 0.952 13 C -0.562 4.562 14 H 0.075 0.925 15 C -0.139 4.139 16 N -0.513 5.513 17 Si 0.718 3.282 18 H -0.204 1.204 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.006 4.006 22 C -0.006 4.006 23 C -0.072 4.072 24 C -0.075 4.075 25 C -0.203 4.203 26 C -0.052 4.052 27 N -0.184 5.184 28 C 0.001 3.999 29 N -0.105 5.105 30 H 0.095 0.905 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.203 0.797 34 H 0.077 0.923 35 H 0.090 0.910 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.142 0.858 42 H 0.059 0.941 43 H 0.152 0.848 44 H 0.153 0.847 45 H 0.173 0.827 46 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -17.519 -10.894 1.006 20.655 hybrid contribution 0.214 1.340 0.577 1.474 sum -17.305 -9.555 1.583 19.831 Atomic orbital electron populations 1.21946 0.73784 1.04835 1.03639 1.48054 1.06893 1.03253 1.56726 1.22956 0.90268 0.93346 0.99016 1.21557 0.93467 0.92701 1.19457 1.17213 0.85503 0.80352 0.80587 1.90844 1.35690 1.71380 1.42258 1.48398 1.22742 1.23533 1.38705 1.21788 0.89712 1.00059 0.90394 1.21937 0.99072 1.00783 0.95362 1.21622 0.96255 0.96358 1.00522 1.18956 0.91542 0.97246 0.90112 0.95186 1.21017 1.03098 1.04140 1.27977 0.92533 1.25037 0.98026 0.95408 0.95418 1.69874 1.28558 1.24802 1.28070 0.86692 0.81586 0.82019 0.77886 1.20352 1.21278 1.20323 1.22308 0.86323 0.89388 1.02551 1.21486 0.90705 0.90786 0.97670 1.18672 0.92633 0.94222 1.01658 1.21547 0.98382 0.92048 0.95571 1.22011 0.94523 1.01419 1.02376 1.22907 0.97520 0.92777 0.91983 1.67784 1.27691 1.04148 1.18817 1.22880 0.86306 0.97283 0.93447 1.77252 1.01140 1.06911 1.25203 0.90531 0.89087 0.89031 0.79705 0.92273 0.90991 0.92422 0.92120 0.93276 0.93081 0.92563 0.85765 0.94052 0.84775 0.84651 0.82681 0.82567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.57 11.39 59.85 0.68 1.26 16 2 N -0.37 -4.14 3.95 -67.65 -0.27 -4.41 16 3 C 0.09 1.11 9.08 -16.64 -0.15 0.95 16 4 C -0.26 -4.24 5.32 -102.95 -0.55 -4.79 16 5 C 0.58 11.78 6.22 -12.58 -0.08 11.70 16 6 O -0.53 -13.03 15.15 5.26 0.08 -12.95 16 7 N -0.60 -11.85 2.97 -174.08 -0.52 -12.37 16 8 C 0.10 1.57 5.52 -3.71 -0.02 1.55 16 9 C -0.13 -2.13 6.08 -26.62 -0.16 -2.29 16 10 C -0.11 -2.16 5.11 -26.69 -0.14 -2.29 16 11 C 0.04 1.00 2.25 -91.65 -0.21 0.79 16 12 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 13 C -0.52 -14.17 8.57 -34.44 -0.30 -14.47 16 14 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 15 C 0.06 1.79 5.30 -17.82 -0.09 1.69 16 16 N -0.88 -25.74 11.38 55.43 0.63 -25.11 16 17 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 C 0.11 2.73 5.41 -3.70 -0.02 2.71 16 22 C 0.16 2.64 6.96 -80.56 -0.56 2.08 16 23 C -0.07 -1.13 5.77 -104.76 -0.60 -1.73 16 24 C -0.05 -0.66 9.92 -38.93 -0.39 -1.05 16 25 C -0.18 -2.22 10.10 -39.49 -0.40 -2.62 16 26 C 0.11 1.47 11.17 -17.50 -0.20 1.28 16 27 N -0.48 -8.64 10.35 -12.96 -0.13 -8.77 16 28 C 0.16 2.98 9.54 -17.18 -0.16 2.82 16 29 N -0.28 -4.08 12.48 34.57 0.43 -3.65 16 30 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.09 0.29 8.13 -51.93 -0.42 -0.13 16 32 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.19 1.62 7.40 -52.49 -0.39 1.23 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.92 4.84 -51.93 -0.25 0.67 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 41 H 0.12 3.51 5.11 -51.93 -0.27 3.24 16 42 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 43 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 44 H 0.14 1.14 8.06 -52.49 -0.42 0.71 16 45 H 0.16 1.64 8.06 -52.49 -0.42 1.21 16 46 H 0.16 3.22 6.74 -52.49 -0.35 2.87 16 LS Contribution 376.58 15.07 5.68 5.68 Total: -1.00 -35.17 376.58 -8.76 -43.93 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -6.30 Total: 3.69 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -3.34 Total: -2.40 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: 0.14 Total: -54.31 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: 0.08 Total: -12.95 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.17 -8.76 -43.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597911080.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.736 kcal (2) G-P(sol) polarization free energy of solvation -35.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds