Wall clock time and date at job start Sat Apr 11 2020 06:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34157 * 125.16214 * 2 1 4 4 C 1.37964 * 107.88904 * 180.17917 * 3 2 1 5 5 C 1.47287 * 126.80997 * 179.89434 * 4 3 2 6 6 O 1.21622 * 119.99842 * 138.83647 * 5 4 3 7 7 N 1.34772 * 120.00070 * 318.83071 * 5 4 3 8 8 C 1.46928 * 120.63108 * 354.50387 * 7 5 4 9 9 C 1.53184 * 108.77805 * 233.60882 * 8 7 5 10 10 C 1.53039 * 109.31574 * 305.36446 * 9 8 7 11 11 C 1.53037 * 109.53521 * 61.36730 * 10 9 8 12 12 H 1.08997 * 109.50515 * 58.61654 * 11 10 9 13 13 C 1.50702 * 109.50117 * 178.68446 * 11 10 9 14 14 H 1.08007 * 119.99711 * 359.93238 * 13 11 10 15 15 C 1.37874 * 120.00356 * 179.65698 * 13 11 10 16 16 N 1.31510 * 120.00030 * 0.27390 * 15 13 11 17 17 Si 1.86798 * 119.99942 * 180.27617 * 15 13 11 18 18 H 1.48499 * 109.47318 * 59.99721 * 17 15 13 19 19 H 1.48499 * 109.47313 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47370 * 300.00006 * 17 15 13 21 21 C 1.46936 * 120.60403 * 174.53058 * 7 5 4 22 22 C 1.46597 * 106.37903 * 359.63242 * 4 3 2 23 23 C 1.48294 * 126.50992 * 180.25088 * 22 4 3 24 24 C 1.39813 * 120.54171 * 144.72097 * 23 22 4 25 25 C 1.38404 * 118.30624 * 179.73199 * 24 23 22 26 26 C 1.38320 * 119.28813 * 0.53941 * 25 24 23 27 27 N 1.31884 * 121.03721 * 359.72370 * 26 25 24 28 28 C 1.31739 * 121.86127 * 359.97438 * 27 26 25 29 29 N 1.31359 * 106.97465 * 0.22168 * 22 4 3 30 30 H 1.09001 * 109.46969 * 270.26208 * 1 2 3 31 31 H 1.09000 * 109.47114 * 30.25492 * 1 2 3 32 32 H 1.08998 * 109.46932 * 150.25574 * 1 2 3 33 33 H 1.08001 * 126.06153 * 0.03650 * 3 2 1 34 34 H 1.09006 * 109.58187 * 113.82132 * 8 7 5 35 35 H 1.09000 * 109.58740 * 353.40361 * 8 7 5 36 36 H 1.09001 * 109.49859 * 185.41287 * 9 8 7 37 37 H 1.09005 * 109.52535 * 65.33531 * 9 8 7 38 38 H 1.09001 * 109.46198 * 301.34586 * 10 9 8 39 39 H 1.08997 * 109.46447 * 181.38134 * 10 9 8 40 40 H 0.97004 * 120.00009 * 180.02562 * 16 15 13 41 41 H 1.08996 * 109.61809 * 6.61568 * 21 7 5 42 42 H 1.09002 * 109.55918 * 246.18753 * 21 7 5 43 43 H 1.08000 * 120.84247 * 359.97438 * 24 23 22 44 44 H 1.08002 * 120.35204 * 180.26302 * 25 24 23 45 45 H 1.07995 * 119.47771 * 179.74665 * 26 25 24 46 46 H 1.08000 * 119.70710 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2376 1.0968 0.0000 4 6 3.5550 0.6871 -0.0041 5 6 4.7478 1.5511 -0.0078 6 8 5.7076 1.2656 0.6825 7 7 4.7758 2.6580 -0.7761 8 6 3.6761 2.9526 -1.7049 9 6 4.2584 3.1738 -3.1043 10 6 5.3340 4.2605 -3.0391 11 6 6.4640 3.8070 -2.1120 12 1 6.8859 2.8729 -2.4825 13 6 7.5378 4.8637 -2.0736 14 1 7.4264 5.7681 -2.6534 15 6 8.6598 4.6785 -1.2940 16 7 8.7954 3.5773 -0.5879 17 14 9.9871 5.9917 -1.2405 18 1 9.4064 7.2624 -0.7373 19 1 11.0798 5.5545 -0.3348 20 1 10.5303 6.2025 -2.6064 21 6 5.9073 3.5924 -0.7010 22 6 3.5322 -0.7787 0.0023 23 6 4.7102 -1.6794 0.0062 24 6 4.6776 -2.8888 0.7070 25 6 5.8009 -3.6966 0.6746 26 6 6.9135 -3.2803 -0.0340 27 7 6.9168 -2.1312 -0.6811 28 6 5.8696 -1.3319 -0.6842 29 7 2.2700 -1.1425 0.0047 30 1 -0.3633 0.0047 1.0277 31 1 -0.3633 0.8877 -0.5178 32 1 -0.3633 -0.8923 -0.5099 33 1 1.8900 2.1193 0.0006 34 1 3.1544 3.8528 -1.3796 35 1 2.9813 2.1130 -1.7266 36 1 3.4652 3.4873 -3.7831 37 1 4.7006 2.2454 -3.4659 38 1 4.8965 5.1819 -2.6547 39 1 5.7328 4.4372 -4.0380 40 1 9.5846 3.4471 -0.0391 41 1 6.6846 3.1751 -0.0609 42 1 5.5677 4.5447 -0.2935 43 1 3.7967 -3.1868 1.2563 44 1 5.8103 -4.6398 1.2007 45 1 7.7932 -3.9063 -0.0579 46 1 5.9105 -0.3983 -1.2258 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597911080.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:40 Heat of formation + Delta-G solvation = 57.487856 kcal Electronic energy + Delta-G solvation = -29975.769352 eV Core-core repulsion = 26059.068530 eV Total energy + Delta-G solvation = -3916.700822 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.38183 -40.86258 -40.49447 -38.18717 -35.29804 -35.04864 -33.54756 -33.20586 -32.08627 -31.86153 -31.00945 -27.89756 -26.97770 -26.29782 -24.70229 -24.61285 -23.44900 -22.93842 -21.44001 -21.09219 -19.94742 -18.59775 -18.13808 -17.86608 -17.48656 -17.20855 -16.76182 -16.58340 -16.22987 -16.07574 -15.75938 -15.26586 -14.97020 -14.80343 -14.79417 -14.50364 -14.22937 -14.19231 -14.04071 -13.74405 -13.51617 -13.48827 -13.36845 -12.83919 -12.83101 -12.66839 -12.26244 -12.23735 -12.06238 -11.82260 -11.60299 -11.24207 -11.08389 -10.91833 -10.71823 -10.62617 -10.48548 -10.45420 -9.94123 -9.46083 -9.27016 -8.06608 -6.25015 -0.24042 0.26975 0.59251 1.18415 1.38814 1.41391 1.43275 1.51597 2.07467 2.39728 2.46332 2.84134 3.10920 3.21078 3.51192 3.56109 3.85860 3.92118 3.94723 4.01147 4.09993 4.16043 4.19911 4.36596 4.43577 4.49737 4.52873 4.58495 4.61884 4.74149 4.77049 4.77325 4.82993 4.90281 4.99429 5.11395 5.16080 5.20438 5.28743 5.30744 5.41303 5.58348 5.68130 5.71019 5.87417 5.94803 6.05198 6.35949 6.39941 6.75425 6.88347 6.97983 7.42213 7.46383 8.95730 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010806 B = 0.004068 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2590.480054 B = 6880.546609 C = 8790.533408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.352 5.352 3 C 0.124 3.876 4 C -0.300 4.300 5 C 0.576 3.424 6 O -0.588 6.588 7 N -0.604 5.604 8 C 0.101 3.899 9 C -0.128 4.128 10 C -0.103 4.103 11 C 0.038 3.962 12 H -0.022 1.022 13 C -0.537 4.537 14 H 0.063 0.937 15 C 0.010 3.990 16 N -0.913 5.913 17 Si 0.956 3.044 18 H -0.264 1.264 19 H -0.291 1.291 20 H -0.269 1.269 21 C 0.129 3.871 22 C 0.143 3.857 23 C -0.080 4.080 24 C -0.052 4.052 25 C -0.160 4.160 26 C 0.093 3.907 27 N -0.519 5.519 28 C 0.129 3.871 29 N -0.290 5.290 30 H 0.095 0.905 31 H 0.128 0.872 32 H 0.099 0.901 33 H 0.229 0.771 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.106 0.894 37 H 0.038 0.962 38 H 0.063 0.937 39 H 0.048 0.952 40 H 0.258 0.742 41 H 0.074 0.926 42 H 0.042 0.958 43 H 0.159 0.841 44 H 0.185 0.815 45 H 0.188 0.812 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.164 -9.943 0.976 24.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.132 5.132 3 C -0.026 4.026 4 C -0.315 4.315 5 C 0.365 3.635 6 O -0.468 6.468 7 N -0.336 5.336 8 C -0.021 4.021 9 C -0.166 4.166 10 C -0.141 4.141 11 C 0.019 3.981 12 H -0.004 1.004 13 C -0.575 4.575 14 H 0.081 0.919 15 C -0.190 4.190 16 N -0.551 5.551 17 Si 0.781 3.219 18 H -0.189 1.189 19 H -0.217 1.217 20 H -0.194 1.194 21 C 0.007 3.993 22 C -0.024 4.024 23 C -0.084 4.084 24 C -0.078 4.078 25 C -0.179 4.179 26 C -0.064 4.064 27 N -0.228 5.228 28 C -0.029 4.029 29 N -0.111 5.111 30 H 0.113 0.887 31 H 0.147 0.853 32 H 0.118 0.882 33 H 0.245 0.755 34 H 0.112 0.888 35 H 0.119 0.881 36 H 0.124 0.876 37 H 0.057 0.943 38 H 0.082 0.918 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.092 0.908 42 H 0.060 0.940 43 H 0.177 0.823 44 H 0.202 0.798 45 H 0.205 0.795 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -21.850 -10.877 0.987 24.428 hybrid contribution 1.430 1.254 0.561 1.983 sum -20.421 -9.623 1.548 22.628 Atomic orbital electron populations 1.22521 0.70053 1.07171 1.05614 1.48556 1.08674 1.02118 1.53834 1.23398 0.88409 0.95109 0.95640 1.21207 0.93658 0.92474 1.24154 1.17779 0.86081 0.80253 0.79368 1.90791 1.38448 1.72723 1.44880 1.48362 1.22796 1.22842 1.39585 1.22158 0.88567 1.02762 0.88563 1.21915 0.99093 0.98441 0.97115 1.21498 0.95597 0.98135 0.98843 1.18890 0.93090 0.94398 0.91709 1.00353 1.21487 1.03946 1.04710 1.27398 0.91863 1.25904 1.00562 0.97364 0.95127 1.70117 1.28830 1.27094 1.29102 0.85641 0.78575 0.79610 0.78030 1.18874 1.21725 1.19410 1.21667 0.86939 0.89749 1.00944 1.21498 0.91316 0.90773 0.98815 1.18814 0.92243 0.95635 1.01685 1.21919 0.99906 0.91035 0.94979 1.22504 0.92691 1.02389 1.00365 1.23537 0.99617 0.91723 0.91522 1.67641 1.28268 1.06045 1.20850 1.22366 0.88150 0.96779 0.95642 1.77195 1.00349 1.08393 1.25174 0.88683 0.85328 0.88235 0.75461 0.88758 0.88095 0.87589 0.94286 0.91787 0.93338 0.93336 0.90774 0.93971 0.82290 0.79756 0.79464 0.86735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.54 11.39 127.77 1.46 1.99 16 2 N -0.35 -6.59 3.95 -367.93 -1.45 -8.05 16 3 C 0.12 2.60 9.08 84.27 0.77 3.37 16 4 C -0.30 -9.96 5.32 -18.78 -0.10 -10.06 16 5 C 0.58 25.07 6.22 86.62 0.54 25.60 16 6 O -0.59 -32.25 15.15 -4.10 -0.06 -32.31 16 7 N -0.60 -24.74 2.97 -822.91 -2.45 -27.19 16 8 C 0.10 2.82 5.52 86.36 0.48 3.29 16 9 C -0.13 -3.87 6.08 30.67 0.19 -3.68 16 10 C -0.10 -4.02 5.11 30.62 0.16 -3.87 16 11 C 0.04 2.00 2.25 -11.46 -0.03 1.97 16 12 H -0.02 -1.33 8.14 -2.39 -0.02 -1.35 16 13 C -0.54 -30.27 8.57 25.60 0.22 -30.05 16 14 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 15 C 0.01 0.58 5.30 84.65 0.45 1.03 16 16 N -0.91 -57.84 11.38 21.45 0.24 -57.59 16 17 Si 0.96 45.45 29.54 68.60 2.03 47.48 16 18 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 19 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 20 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 21 C 0.13 6.58 5.41 86.36 0.47 7.05 16 22 C 0.14 4.75 6.96 44.07 0.31 5.06 16 23 C -0.08 -2.80 5.77 -19.95 -0.12 -2.91 16 24 C -0.05 -1.39 9.92 22.69 0.23 -1.16 16 25 C -0.16 -3.62 10.10 22.33 0.23 -3.39 16 26 C 0.09 2.63 11.17 84.70 0.95 3.58 16 27 N -0.52 -20.54 10.35 -194.92 -2.02 -22.56 16 28 C 0.13 5.36 9.54 84.97 0.81 6.17 16 29 N -0.29 -7.80 12.48 -44.53 -0.56 -8.35 16 30 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.13 -0.05 8.13 -2.39 -0.02 -0.07 16 32 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.23 2.68 7.40 -2.91 -0.02 2.66 16 34 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 35 H 0.10 2.25 4.84 -2.39 -0.01 2.24 16 36 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 38 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 41 H 0.07 4.59 5.11 -2.39 -0.01 4.58 16 42 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16 43 H 0.16 3.40 8.06 -2.91 -0.02 3.37 16 44 H 0.19 2.31 8.06 -2.91 -0.02 2.29 16 45 H 0.19 3.80 8.06 -2.91 -0.02 3.78 16 46 H 0.11 5.54 6.74 -2.91 -0.02 5.52 16 Total: -1.00 -90.14 376.58 3.72 -86.42 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: 1.00 Total: 18.17 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: 6.99 Total: 3.99 kcal Atomic # 7 Polarization: -117.51 SS G_CDS: -6.23 Total: -123.74 kcal Atomic # 8 Polarization: -32.25 SS G_CDS: -0.06 Total: -32.31 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -90.14 3.72 -86.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597911080.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.910 kcal (2) G-P(sol) polarization free energy of solvation -90.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds