Wall clock time and date at job start Sat Apr 11 2020 06:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35044 * 126.39267 * 2 1 4 4 N 1.30505 * 108.69809 * 180.26570 * 3 2 1 5 5 C 1.34134 * 109.25127 * 359.76831 * 4 3 2 6 6 C 1.34665 * 108.02311 * 359.97438 * 5 4 3 7 7 C 1.50700 * 126.59089 * 179.97438 * 6 5 4 8 8 C 1.50705 * 109.46844 * 85.03152 * 7 6 5 9 9 O 1.21287 * 119.99625 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00018 * 179.97438 * 8 7 6 11 11 C 1.46504 * 119.99822 * 179.97438 * 10 8 7 12 12 H 1.09000 * 110.72671 * 31.59581 * 11 10 8 13 13 C 1.54347 * 110.82245 * 267.97429 * 11 10 8 14 14 C 1.51364 * 105.17046 * 268.12430 * 13 11 10 15 15 C 1.38500 * 130.39822 * 162.81658 * 14 13 11 16 16 C 1.38098 * 120.21751 * 179.97438 * 15 14 13 17 17 C 1.38253 * 119.93967 * 359.97438 * 16 15 14 18 18 C 1.38105 * 119.93122 * 0.02562 * 17 16 15 19 19 C 1.38223 * 109.75964 * 342.80989 * 14 13 11 20 20 C 1.51373 * 109.75723 * 0.02562 * 19 14 13 21 21 H 1.08996 * 110.38602 * 136.15442 * 20 19 14 22 22 N 1.46505 * 110.30067 * 258.26300 * 20 19 14 23 23 C 1.36931 * 119.99788 * 270.74509 * 22 20 19 24 24 H 1.08002 * 120.00438 * 0.02562 * 23 22 20 25 25 C 1.38817 * 119.99680 * 179.72358 * 23 22 20 26 26 N 1.31614 * 119.99888 * 0.27479 * 25 23 22 27 27 Si 1.86803 * 119.99862 * 180.27671 * 25 23 22 28 28 H 1.48508 * 109.46872 * 359.97438 * 27 25 23 29 29 H 1.48494 * 109.47141 * 119.99997 * 27 25 23 30 30 H 1.48498 * 109.47018 * 240.00044 * 27 25 23 31 31 H 1.08998 * 109.47126 * 270.12259 * 1 2 3 32 32 H 1.08996 * 109.47345 * 30.12247 * 1 2 3 33 33 H 1.09000 * 109.46868 * 150.12545 * 1 2 3 34 34 H 1.07996 * 125.65677 * 0.06819 * 3 2 1 35 35 H 1.08007 * 125.98382 * 180.02562 * 5 4 3 36 36 H 1.08999 * 109.47199 * 325.03379 * 7 6 5 37 37 H 1.08998 * 109.47426 * 205.03037 * 7 6 5 38 38 H 0.96999 * 119.99923 * 0.02562 * 10 8 7 39 39 H 1.08999 * 110.30308 * 27.04496 * 13 11 10 40 40 H 1.09001 * 110.30234 * 149.20215 * 13 11 10 41 41 H 1.07999 * 119.88761 * 0.02562 * 15 14 13 42 42 H 1.08011 * 120.02978 * 179.97438 * 16 15 14 43 43 H 1.08003 * 120.03633 * 180.02562 * 17 16 15 44 44 H 1.07997 * 119.88830 * 180.02562 * 18 17 16 45 45 H 0.97000 * 119.99792 * 90.74303 * 22 20 19 46 46 H 0.97005 * 119.99715 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2662 1.0871 0.0000 4 7 3.5095 0.6904 -0.0057 5 6 3.5460 -0.6504 -0.0044 6 6 2.2772 -1.1017 0.0029 7 6 1.8364 -2.5428 0.0064 8 6 1.8150 -3.0581 1.4224 9 8 2.1275 -2.3272 2.3385 10 7 1.4486 -4.3311 1.6708 11 6 1.4284 -4.8322 3.0473 12 1 1.1802 -4.0326 3.7453 13 6 2.7777 -5.4864 3.4130 14 6 2.6119 -6.9523 3.0744 15 6 3.5609 -7.9448 2.8937 16 6 3.1695 -9.2328 2.5854 17 6 1.8263 -9.5338 2.4571 18 6 0.8784 -8.5456 2.6369 19 6 1.2689 -7.2530 2.9451 20 6 0.4405 -6.0096 3.1875 21 1 -0.3516 -5.9300 2.4430 22 7 -0.1313 -6.0346 4.5361 23 6 -1.3513 -6.6179 4.7518 24 1 -1.8918 -7.0598 3.9278 25 6 -1.8904 -6.6467 6.0307 26 7 -1.2314 -6.1086 7.0349 27 14 -3.5511 -7.4492 6.3263 28 1 -4.0822 -7.9751 5.0430 29 1 -3.3963 -8.5656 7.2931 30 1 -4.4954 -6.4444 6.8775 31 1 -0.3633 0.0022 1.0276 32 1 -0.3634 0.8888 -0.5157 33 1 -0.3633 -0.8911 -0.5119 34 1 1.9334 2.1145 0.0010 35 1 4.4369 -1.2611 -0.0078 36 1 2.5321 -3.1370 -0.5860 37 1 0.8373 -2.6182 -0.4228 38 1 1.1991 -4.9157 0.9381 39 1 3.5822 -5.0502 2.8210 40 1 2.9810 -5.3646 4.4769 41 1 4.6103 -7.7107 2.9950 42 1 3.9122 -10.0043 2.4448 43 1 1.5185 -10.5406 2.2165 44 1 -0.1707 -8.7815 2.5369 45 1 0.3544 -5.6380 5.2762 46 1 -1.6084 -6.1284 7.9285 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960326830.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:45 Heat of formation + Delta-G solvation = 71.505946 kcal Electronic energy + Delta-G solvation = -28938.941018 eV Core-core repulsion = 25022.848066 eV Total energy + Delta-G solvation = -3916.092952 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.19258 -40.24931 -38.95095 -36.18829 -34.17144 -34.04231 -32.83464 -32.02679 -31.18973 -29.80329 -28.23029 -27.17295 -26.81730 -26.06123 -23.35966 -22.28279 -21.54146 -21.12715 -20.34116 -20.14554 -19.68893 -17.57275 -17.18429 -17.12791 -16.14761 -15.68108 -15.59878 -15.47816 -14.80728 -14.60268 -14.50609 -14.39444 -13.85345 -13.74341 -13.45517 -13.18243 -13.10055 -13.05590 -12.95725 -12.89945 -12.73894 -12.67169 -12.23464 -11.60124 -11.37263 -11.12237 -11.06875 -10.88715 -10.62415 -10.42140 -10.15443 -10.05037 -9.96378 -9.82968 -9.62034 -9.12322 -8.91993 -8.42063 -8.36987 -8.13149 -7.14480 -5.89115 -3.19653 1.79104 1.84063 1.88038 2.62338 2.70556 3.06226 3.35053 3.35874 3.41803 3.43607 4.18529 4.36357 4.47918 4.50432 4.62336 4.69743 4.79302 4.87025 4.91154 5.04784 5.11950 5.21585 5.31496 5.33771 5.39862 5.46217 5.49533 5.56748 5.66875 5.73092 5.86249 5.95481 6.07314 6.17005 6.22027 6.23858 6.31896 6.45807 6.57565 6.65406 6.74600 6.86472 6.93656 7.07633 7.18886 7.44374 7.57782 7.59846 7.99912 8.26586 8.31350 9.38959 9.90303 10.25727 11.32587 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010139 B = 0.003198 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2760.815468 B = 8752.564046 C =10711.742943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.454 5.454 3 C 0.180 3.820 4 N -0.495 5.495 5 C -0.010 4.010 6 C -0.006 4.006 7 C -0.065 4.065 8 C 0.511 3.489 9 O -0.526 6.526 10 N -0.713 5.713 11 C 0.136 3.864 12 H 0.109 0.891 13 C -0.087 4.087 14 C -0.096 4.096 15 C -0.114 4.114 16 C -0.131 4.131 17 C -0.128 4.128 18 C -0.091 4.091 19 C -0.094 4.094 20 C 0.208 3.792 21 H 0.063 0.937 22 N -0.704 5.704 23 C -0.245 4.245 24 H 0.073 0.927 25 C -0.007 4.007 26 N -0.926 5.926 27 Si 0.908 3.092 28 H -0.279 1.279 29 H -0.290 1.290 30 H -0.290 1.290 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.203 0.797 35 H 0.166 0.834 36 H 0.116 0.884 37 H 0.098 0.902 38 H 0.399 0.601 39 H 0.071 0.929 40 H 0.087 0.913 41 H 0.110 0.890 42 H 0.114 0.886 43 H 0.115 0.885 44 H 0.116 0.884 45 H 0.388 0.612 46 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.436 4.855 -17.989 19.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.137 5.137 3 C -0.101 4.101 4 N -0.212 5.212 5 C -0.158 4.158 6 C -0.120 4.120 7 C -0.106 4.106 8 C 0.296 3.704 9 O -0.401 6.401 10 N -0.365 5.365 11 C 0.031 3.969 12 H 0.127 0.873 13 C -0.125 4.125 14 C -0.097 4.097 15 C -0.133 4.133 16 C -0.150 4.150 17 C -0.146 4.146 18 C -0.109 4.109 19 C -0.098 4.098 20 C 0.096 3.904 21 H 0.081 0.919 22 N -0.343 5.343 23 C -0.376 4.376 24 H 0.091 0.909 25 C -0.204 4.204 26 N -0.572 5.572 27 Si 0.739 3.261 28 H -0.204 1.204 29 H -0.217 1.217 30 H -0.217 1.217 31 H 0.099 0.901 32 H 0.107 0.893 33 H 0.103 0.897 34 H 0.220 0.780 35 H 0.184 0.816 36 H 0.134 0.866 37 H 0.116 0.884 38 H 0.233 0.767 39 H 0.090 0.910 40 H 0.105 0.895 41 H 0.128 0.872 42 H 0.132 0.868 43 H 0.133 0.867 44 H 0.134 0.866 45 H 0.222 0.778 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 5.967 5.873 -17.274 19.196 hybrid contribution -1.602 -1.424 0.385 2.178 sum 4.365 4.449 -16.889 18.002 Atomic orbital electron populations 1.22066 0.76713 1.04419 1.04127 1.45201 1.07516 1.06671 1.54337 1.24859 0.85661 0.93288 1.06338 1.70260 1.19399 1.11947 1.19638 1.21962 0.95518 0.91091 1.07241 1.20394 0.91327 0.88415 1.11904 1.20037 1.04212 0.90660 0.95738 1.20426 0.77316 0.81823 0.90833 1.90763 1.46849 1.56371 1.46126 1.45881 1.68884 1.12232 1.09471 1.21918 0.95056 0.97102 0.82873 0.87327 1.21410 0.97863 0.91105 1.02114 1.20527 0.94074 0.95363 0.99726 1.20488 0.98397 0.92659 1.01706 1.20854 0.95874 0.96040 1.02227 1.20971 0.93171 0.98680 1.01795 1.20611 0.99298 0.92012 0.99026 1.21741 0.95294 0.96852 0.95921 1.19835 0.92308 0.87655 0.90595 0.91890 1.42286 1.20489 1.68706 1.02794 1.19226 0.94301 1.30549 0.93528 0.90931 1.24777 0.98899 1.01029 0.95645 1.69673 1.38628 1.49175 0.99760 0.86117 0.83539 0.78689 0.77792 1.20442 1.21727 1.21730 0.90129 0.89330 0.89747 0.77994 0.81645 0.86583 0.88367 0.76694 0.91009 0.89463 0.87154 0.86803 0.86733 0.86600 0.77752 0.93292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.46 11.00 59.85 0.66 1.12 16 2 N -0.45 -4.73 3.15 -121.37 -0.38 -5.12 16 3 C 0.18 2.00 12.56 -90.37 -1.14 0.86 16 4 N -0.49 -6.93 11.25 -14.66 -0.16 -7.10 16 5 C -0.01 -0.13 11.79 -17.81 -0.21 -0.34 16 6 C -0.01 -0.06 5.44 -81.61 -0.44 -0.51 16 7 C -0.07 -0.59 6.04 -29.03 -0.18 -0.77 16 8 C 0.51 6.70 7.82 -10.98 -0.09 6.62 16 9 O -0.53 -9.42 15.68 5.55 0.09 -9.33 16 10 N -0.71 -8.95 5.11 -52.44 -0.27 -9.22 16 11 C 0.14 2.21 3.03 -66.53 -0.20 2.01 16 12 H 0.11 2.08 7.47 -51.93 -0.39 1.69 16 13 C -0.09 -1.37 6.49 -26.85 -0.17 -1.54 16 14 C -0.10 -1.56 6.14 -104.20 -0.64 -2.20 16 15 C -0.11 -1.69 10.04 -39.54 -0.40 -2.09 16 16 C -0.13 -1.85 10.05 -39.63 -0.40 -2.24 16 17 C -0.13 -1.90 10.05 -39.62 -0.40 -2.30 16 18 C -0.09 -1.54 10.04 -39.54 -0.40 -1.94 16 19 C -0.09 -1.66 5.77 -104.20 -0.60 -2.26 16 20 C 0.21 3.85 3.13 -68.05 -0.21 3.63 16 21 H 0.06 1.14 8.03 -51.93 -0.42 0.72 16 22 N -0.70 -16.74 5.13 -53.55 -0.27 -17.02 16 23 C -0.25 -6.44 9.96 -15.06 -0.15 -6.59 16 24 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 25 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 26 N -0.93 -27.22 13.06 55.49 0.72 -26.50 16 27 Si 0.91 21.65 29.55 -169.99 -5.02 16.63 16 28 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 29 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 30 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.08 0.45 7.11 -51.93 -0.37 0.08 16 34 H 0.20 1.43 8.06 -52.49 -0.42 1.00 16 35 H 0.17 1.90 8.06 -52.48 -0.42 1.48 16 36 H 0.12 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.10 0.65 7.09 -51.93 -0.37 0.28 16 38 H 0.40 3.94 8.66 -40.82 -0.35 3.58 16 39 H 0.07 1.04 8.09 -51.93 -0.42 0.62 16 40 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 41 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 42 H 0.11 1.29 8.06 -52.48 -0.42 0.87 16 43 H 0.11 1.42 8.06 -52.48 -0.42 1.00 16 44 H 0.12 1.95 8.06 -52.49 -0.42 1.53 16 45 H 0.39 10.03 7.82 -40.82 -0.32 9.71 16 46 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 LS Contribution 390.43 15.07 5.88 5.88 Total: -1.00 -35.44 390.43 -10.89 -46.32 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: -6.41 Total: 14.26 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: -5.06 Total: -8.81 kcal Atomic # 7 Polarization: -64.59 SS G_CDS: -0.37 Total: -64.95 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.09 Total: -9.33 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.44 -10.89 -46.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960326830.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.827 kcal (2) G-P(sol) polarization free energy of solvation -35.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds