Wall clock time and date at job start Sat Apr 11 2020 06:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46499 * 109.47174 * 2 1 4 4 C 1.34779 * 119.99699 * 94.96381 * 3 2 1 5 5 O 1.21543 * 119.99625 * 185.60494 * 4 3 2 6 6 C 1.47868 * 119.99928 * 5.60946 * 4 3 2 7 7 C 1.38945 * 121.42342 * 54.98001 * 6 4 3 8 8 N 1.32582 * 120.33819 * 180.02562 * 7 6 4 9 9 N 1.28381 * 123.43506 * 359.97438 * 8 7 6 10 10 C 1.33468 * 121.85569 * 0.02562 * 9 8 7 11 11 C 1.40578 * 121.75052 * 180.02562 * 10 9 8 12 12 C 1.36118 * 119.61359 * 179.97438 * 11 10 9 13 13 C 1.39374 * 121.13145 * 359.97438 * 12 11 10 14 14 C 1.36347 * 120.88203 * 0.02562 * 13 12 11 15 15 C 1.39850 * 119.50213 * 0.02562 * 14 13 12 16 16 C 1.46502 * 120.00074 * 274.96904 * 3 2 1 17 17 H 1.08994 * 110.88622 * 356.11749 * 16 3 2 18 18 C 1.55158 * 111.00580 * 119.99858 * 16 3 2 19 19 C 1.54323 * 102.94321 * 153.57205 * 18 16 3 20 20 N 1.47024 * 107.26884 * 337.81000 * 19 18 16 21 21 C 1.36938 * 125.64315 * 178.89610 * 20 19 18 22 22 H 1.07999 * 120.00007 * 180.02562 * 21 20 19 23 23 C 1.38812 * 120.00298 * 0.02562 * 21 20 19 24 24 N 1.31620 * 120.00024 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 119.99977 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46994 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.46770 * 119.99997 * 25 23 21 28 28 H 1.48493 * 109.46956 * 240.00217 * 25 23 21 29 29 C 1.47414 * 108.70731 * 358.93560 * 20 19 18 30 30 H 1.08994 * 109.47244 * 299.99910 * 1 2 3 31 31 H 1.09003 * 109.47141 * 59.99788 * 1 2 3 32 32 H 1.09001 * 109.46973 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.46858 * 240.00364 * 2 1 3 34 34 H 1.08993 * 109.47333 * 120.00177 * 2 1 3 35 35 H 1.08003 * 119.83186 * 0.02562 * 7 6 4 36 36 H 1.08004 * 120.19445 * 359.94996 * 11 10 9 37 37 H 1.07992 * 119.43535 * 179.97438 * 12 11 10 38 38 H 1.07996 * 119.56037 * 179.72780 * 13 12 11 39 39 H 1.08001 * 120.24413 * 179.97438 * 14 13 12 40 40 H 1.08997 * 110.72362 * 271.94156 * 18 16 3 41 41 H 1.09006 * 110.71698 * 35.21054 * 18 16 3 42 42 H 1.08998 * 109.88084 * 97.22518 * 19 18 16 43 43 H 1.08999 * 109.88519 * 218.39330 * 19 18 16 44 44 H 0.96993 * 120.00038 * 179.97438 * 24 23 21 45 45 H 1.08999 * 110.37249 * 265.29229 * 29 20 19 46 46 H 1.08995 * 110.37088 * 142.96720 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3382 1.9828 1.1629 5 8 2.6456 3.1587 1.1743 6 6 2.3153 1.2123 2.4247 7 6 3.0427 0.0373 2.5693 8 7 3.0061 -0.6368 3.7104 9 7 2.3198 -0.2653 4.7298 10 6 1.5801 0.8455 4.7141 11 6 0.8298 1.2505 5.8318 12 6 0.0909 2.3919 5.7682 13 6 0.0644 3.1696 4.6119 14 6 0.7794 2.8080 3.5087 15 6 1.5488 1.6406 3.5389 16 6 2.1590 2.1085 -1.2640 17 1 1.9262 1.4636 -2.1113 18 6 1.2727 3.3820 -1.2744 19 6 2.0145 4.3112 -2.2582 20 7 3.4123 3.8590 -2.3161 21 6 4.3972 4.4083 -3.0929 22 1 5.3973 4.0016 -3.0644 23 6 4.1103 5.4879 -3.9169 24 7 2.8916 5.9840 -3.9512 25 14 5.4537 6.2368 -4.9770 26 1 6.7251 5.5015 -4.7574 27 1 5.0671 6.1399 -6.4075 28 1 5.6368 7.6638 -4.6092 29 6 3.5776 2.7157 -1.4003 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 3.6411 -0.3287 1.7481 36 1 0.8393 0.6593 6.7356 37 1 -0.4848 2.7000 6.6283 38 1 -0.5342 4.0682 4.5878 39 1 0.7511 3.4182 2.6180 40 1 0.2721 3.1526 -1.6406 41 1 1.2280 3.8288 -0.2811 42 1 1.5612 4.2419 -3.2470 43 1 1.9723 5.3398 -1.9000 44 1 2.6912 6.7386 -4.5267 45 1 3.9395 3.0560 -0.4301 46 1 4.2639 1.9842 -1.8268 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033965966.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:07 Heat of formation + Delta-G solvation = 91.886529 kcal Electronic energy + Delta-G solvation = -30023.018041 eV Core-core repulsion = 26107.808857 eV Total energy + Delta-G solvation = -3915.209183 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.83525 -40.05143 -38.15741 -36.98195 -35.73961 -33.95866 -32.32888 -31.94275 -30.77447 -30.44782 -29.07301 -27.44039 -25.93961 -24.76538 -24.46043 -23.66639 -22.88596 -21.17554 -20.08705 -19.51644 -18.82957 -18.48374 -17.31094 -16.97019 -16.16140 -16.05174 -15.50229 -15.19384 -14.87341 -14.76945 -14.59186 -14.40730 -14.08906 -13.91045 -13.67321 -13.22870 -12.97389 -12.71771 -12.70159 -12.30345 -12.22641 -12.10486 -12.04515 -11.77508 -11.41088 -11.13358 -11.00177 -10.90341 -10.89338 -10.73428 -10.63028 -10.16721 -10.05154 -9.92592 -9.70265 -9.66345 -9.29454 -8.73529 -8.62025 -8.47173 -6.76879 -5.67848 -3.00717 -0.49838 0.29328 1.32150 2.37074 2.55603 2.82368 3.41862 3.47395 3.49830 3.56484 3.64841 3.96310 4.00618 4.14554 4.45287 4.53034 4.55501 4.69982 4.76758 4.81994 4.97584 5.05239 5.18882 5.25259 5.38920 5.41200 5.45035 5.48399 5.57539 5.58917 5.59299 5.74212 5.77519 5.82547 5.89243 5.97881 5.99966 6.11865 6.31807 6.41948 6.52683 6.55999 6.65311 7.07980 7.34896 7.59348 7.67856 7.85775 8.05138 8.28929 8.29332 9.25328 9.85477 10.51513 11.43888 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017769 B = 0.002978 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.417887 B = 9399.458845 C = 9739.169175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.093 3.907 3 N -0.590 5.590 4 C 0.557 3.443 5 O -0.492 6.492 6 C -0.087 4.087 7 C 0.039 3.961 8 N -0.219 5.219 9 N -0.197 5.197 10 C 0.064 3.936 11 C -0.080 4.080 12 C -0.095 4.095 13 C -0.091 4.091 14 C -0.095 4.095 15 C -0.032 4.032 16 C 0.131 3.869 17 H 0.097 0.903 18 C -0.153 4.153 19 C 0.185 3.815 20 N -0.601 5.601 21 C -0.224 4.224 22 H 0.078 0.922 23 C -0.009 4.009 24 N -0.922 5.922 25 Si 0.912 3.088 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.291 1.291 29 C 0.126 3.874 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.179 0.821 36 H 0.145 0.855 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.144 0.856 40 H 0.055 0.945 41 H 0.074 0.926 42 H 0.045 0.955 43 H 0.043 0.957 44 H 0.251 0.749 45 H 0.042 0.958 46 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.470 -13.029 16.680 23.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.031 4.031 3 N -0.323 5.323 4 C 0.342 3.658 5 O -0.366 6.366 6 C -0.103 4.103 7 C -0.113 4.113 8 N -0.072 5.072 9 N -0.051 5.051 10 C -0.065 4.065 11 C -0.101 4.101 12 C -0.115 4.115 13 C -0.110 4.110 14 C -0.114 4.114 15 C -0.041 4.041 16 C 0.028 3.972 17 H 0.115 0.885 18 C -0.193 4.193 19 C 0.060 3.940 20 N -0.328 5.328 21 C -0.352 4.352 22 H 0.095 0.905 23 C -0.205 4.205 24 N -0.570 5.570 25 Si 0.742 3.258 26 H -0.205 1.205 27 H -0.218 1.218 28 H -0.218 1.218 29 C -0.001 4.001 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.196 0.804 36 H 0.163 0.837 37 H 0.156 0.844 38 H 0.155 0.845 39 H 0.162 0.838 40 H 0.074 0.926 41 H 0.092 0.908 42 H 0.063 0.937 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.060 0.940 46 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -8.732 -13.500 17.267 23.594 hybrid contribution 0.187 1.622 -1.468 2.196 sum -8.545 -11.879 15.799 21.534 Atomic orbital electron populations 1.22179 0.95528 1.02221 1.02806 1.21845 0.95038 0.82534 1.03635 1.47934 1.64021 1.14071 1.06264 1.17827 0.78736 0.86753 0.82527 1.90904 1.45711 1.14348 1.85664 1.21361 0.97415 0.95814 0.95669 1.24265 0.97751 0.91367 0.97966 1.73028 1.12012 1.25625 0.96495 1.73597 1.01788 1.10985 1.18753 1.20316 0.98237 0.93698 0.94248 1.20793 0.95342 0.96947 0.97015 1.21097 0.97953 0.94040 0.98450 1.21213 0.97673 0.99685 0.92467 1.21163 0.95033 0.94795 1.00362 1.18621 0.96567 0.96188 0.92763 1.22529 0.98934 0.93144 0.82618 0.88522 1.23261 0.97678 0.96167 1.02153 1.21065 0.83097 0.94754 0.95114 1.44314 1.07196 1.33516 1.47727 1.19092 0.89845 1.10441 1.15850 0.90456 1.24792 0.96832 0.98651 1.00252 1.69974 1.17970 1.26867 1.42161 0.86041 0.80776 0.78968 0.79976 1.20532 1.21805 1.21777 1.21856 0.92629 0.90423 0.95223 0.92824 0.91560 0.91474 0.89521 0.90326 0.80398 0.83679 0.84395 0.84476 0.83778 0.92583 0.90761 0.93673 0.93883 0.93872 0.94004 0.94715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.55 10.24 37.16 0.38 -1.17 16 2 C 0.09 0.92 5.96 -4.04 -0.02 0.89 16 3 N -0.59 -8.12 2.56 -164.76 -0.42 -8.54 16 4 C 0.56 8.47 5.80 -12.32 -0.07 8.40 16 5 O -0.49 -9.48 12.04 5.33 0.06 -9.41 16 6 C -0.09 -1.14 4.95 -104.31 -0.52 -1.65 16 7 C 0.04 0.46 8.82 -16.97 -0.15 0.31 16 8 N -0.22 -2.85 11.47 30.73 0.35 -2.49 16 9 N -0.20 -2.56 11.52 32.22 0.37 -2.19 16 10 C 0.06 0.76 6.69 -84.86 -0.57 0.19 16 11 C -0.08 -0.70 10.01 -39.46 -0.40 -1.09 16 12 C -0.09 -0.68 9.94 -39.92 -0.40 -1.07 16 13 C -0.09 -0.77 9.96 -39.84 -0.40 -1.17 16 14 C -0.09 -1.09 9.31 -39.66 -0.37 -1.46 16 15 C -0.03 -0.41 5.77 -106.50 -0.61 -1.02 16 16 C 0.13 2.23 3.56 -65.78 -0.23 2.00 16 17 H 0.10 1.52 7.93 -51.93 -0.41 1.11 16 18 C -0.15 -2.94 6.33 -24.90 -0.16 -3.10 16 19 C 0.18 4.59 5.37 -3.06 -0.02 4.57 16 20 N -0.60 -15.74 3.39 -170.08 -0.58 -16.32 16 21 C -0.22 -6.38 10.28 -15.06 -0.15 -6.54 16 22 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 23 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 24 N -0.92 -27.44 10.31 55.49 0.57 -26.87 16 25 Si 0.91 22.46 29.55 -169.99 -5.02 17.44 16 26 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 27 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 28 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 29 C 0.13 2.69 6.58 -2.53 -0.02 2.68 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.09 0.74 8.03 -51.93 -0.42 0.32 16 34 H 0.08 0.70 4.45 -51.93 -0.23 0.47 16 35 H 0.18 1.68 7.59 -52.48 -0.40 1.28 16 36 H 0.15 0.94 8.06 -52.48 -0.42 0.52 16 37 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 38 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 39 H 0.14 1.85 6.68 -52.49 -0.35 1.49 16 40 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.07 1.49 6.06 -51.93 -0.31 1.17 16 42 H 0.05 1.21 7.38 -51.93 -0.38 0.83 16 43 H 0.04 1.21 7.51 -51.93 -0.39 0.82 16 44 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 45 H 0.04 0.97 5.73 -51.93 -0.30 0.68 16 46 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 369.61 15.07 5.57 5.57 Total: -1.00 -34.20 369.61 -9.01 -43.22 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -6.12 Total: -0.81 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: -3.80 Total: 0.40 kcal Atomic # 7 Polarization: -56.70 SS G_CDS: 0.30 Total: -56.41 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.06 Total: -9.41 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.20 -9.01 -43.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033965966.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.102 kcal (2) G-P(sol) polarization free energy of solvation -34.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds