Wall clock time and date at job start Sat Apr 11 2020 06:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47077 * 2 1 4 4 C 1.34773 * 120.00191 * 82.79417 * 3 2 1 5 5 O 1.21494 * 120.00296 * 183.29110 * 4 3 2 6 6 C 1.48383 * 120.00196 * 3.28718 * 4 3 2 7 7 C 1.40208 * 119.22438 * 173.11954 * 6 4 3 8 8 C 1.36640 * 119.90712 * 180.02562 * 7 6 4 9 9 C 1.40554 * 118.11074 * 0.02562 * 8 7 6 10 10 C 1.40407 * 122.06630 * 180.02562 * 9 8 7 11 11 N 1.31248 * 119.87293 * 179.97438 * 10 9 8 12 12 C 1.32601 * 122.68423 * 0.02562 * 11 10 9 13 13 C 1.36095 * 121.99370 * 359.97438 * 12 11 10 14 14 C 1.40953 * 118.76998 * 0.02562 * 13 12 11 15 15 N 1.31987 * 119.21504 * 353.09510 * 6 4 3 16 16 C 1.46504 * 120.00098 * 262.79264 * 3 2 1 17 17 H 1.09000 * 110.88340 * 356.12208 * 16 3 2 18 18 C 1.55155 * 111.00497 * 119.99967 * 16 3 2 19 19 C 1.54325 * 102.94444 * 153.58040 * 18 16 3 20 20 N 1.47021 * 107.26837 * 337.80207 * 19 18 16 21 21 C 1.36933 * 125.64822 * 178.98676 * 20 19 18 22 22 H 1.08001 * 119.99997 * 179.97438 * 21 20 19 23 23 C 1.38811 * 120.00274 * 359.97438 * 21 20 19 24 24 N 1.31622 * 119.99759 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 120.00435 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47314 * 89.99804 * 25 23 21 27 27 H 1.48504 * 109.47201 * 210.00139 * 25 23 21 28 28 H 1.48497 * 109.47213 * 329.99964 * 25 23 21 29 29 C 1.47426 * 108.70494 * 358.94708 * 20 19 18 30 30 H 1.08994 * 109.46663 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46909 * 299.99680 * 1 2 3 32 32 H 1.08995 * 109.47117 * 60.00096 * 1 2 3 33 33 H 1.09001 * 109.46909 * 240.00320 * 2 1 3 34 34 H 1.08998 * 109.47571 * 120.00116 * 2 1 3 35 35 H 1.07997 * 120.04288 * 0.02562 * 7 6 4 36 36 H 1.08001 * 120.93927 * 180.02562 * 8 7 6 37 37 H 1.08000 * 120.06297 * 359.95188 * 10 9 8 38 38 H 1.07995 * 119.00172 * 180.27240 * 12 11 10 39 39 H 1.07995 * 120.61981 * 180.02562 * 13 12 11 40 40 H 1.09008 * 110.72061 * 271.94283 * 18 16 3 41 41 H 1.08997 * 110.71874 * 35.21085 * 18 16 3 42 42 H 1.08991 * 109.88763 * 97.22297 * 19 18 16 43 43 H 1.09006 * 109.88113 * 218.39081 * 19 18 16 44 44 H 0.97000 * 120.00088 * 180.02562 * 24 23 21 45 45 H 1.09004 * 110.36342 * 265.28740 * 29 20 19 46 46 H 1.08993 * 110.36799 * 142.96222 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1049 2.0654 1.1579 5 8 2.4528 3.2294 1.1512 6 6 1.7753 1.3970 2.4411 7 6 2.0090 2.0750 3.6458 8 6 1.7111 1.4725 4.8355 9 6 1.1735 0.1743 4.8040 10 6 0.8369 -0.5218 5.9761 11 7 0.3369 -1.7327 5.8965 12 6 0.1288 -2.3469 4.7399 13 6 0.4215 -1.7585 3.5481 14 6 0.9624 -0.4569 3.5489 15 7 1.2686 0.1785 2.4211 16 6 2.4125 2.0188 -1.2587 17 1 2.3483 1.3143 -2.0879 18 6 1.5551 3.2821 -1.5347 19 6 2.4842 4.1451 -2.4143 20 7 3.8623 3.6999 -2.1612 21 6 4.9860 4.2013 -2.7621 22 1 5.9576 3.8052 -2.5062 23 6 4.8763 5.2188 -3.6999 24 7 3.6922 5.7012 -4.0121 25 14 6.4092 5.9033 -4.5190 26 1 6.6962 5.1323 -5.7553 27 1 6.1900 7.3306 -4.8655 28 1 7.5602 5.7913 -3.5875 29 6 3.8342 2.6249 -1.1528 30 1 -0.3632 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 2.4239 3.0720 3.6335 36 1 1.8840 1.9795 5.7733 37 1 0.9895 -0.0618 6.9412 38 1 -0.2899 -3.3423 4.7436 39 1 0.2426 -2.2791 2.6190 40 1 0.6456 3.0203 -2.0755 41 1 1.3169 3.7973 -0.6041 42 1 2.2360 4.0032 -3.4661 43 1 2.3787 5.1961 -2.1450 44 1 3.6155 6.4119 -4.6678 45 1 3.9983 3.0352 -0.1563 46 1 4.5864 1.8701 -1.3818 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033971907.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:11 Heat of formation + Delta-G solvation = 94.978279 kcal Electronic energy + Delta-G solvation = -29661.014148 eV Core-core repulsion = 25745.939033 eV Total energy + Delta-G solvation = -3915.075115 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.72261 -40.12907 -38.22970 -36.73728 -35.63767 -33.97303 -32.47803 -31.77017 -30.82111 -30.22697 -28.96936 -27.34788 -25.81609 -24.68891 -24.18940 -23.40038 -22.97759 -21.36511 -19.99952 -19.59600 -18.85629 -17.67481 -17.37721 -16.82725 -16.43921 -15.73612 -15.44168 -15.27213 -14.89997 -14.63262 -14.50877 -14.45676 -14.13876 -13.78175 -13.41824 -13.34730 -13.17844 -13.00876 -12.74893 -12.52698 -12.18689 -11.94311 -11.74900 -11.68540 -11.31535 -10.89639 -10.85386 -10.82418 -10.65045 -10.43363 -10.16387 -10.05230 -9.98623 -9.65052 -9.63752 -9.52334 -9.17742 -8.90422 -8.54334 -8.29339 -6.69920 -5.62133 -2.94713 -0.33089 0.18900 1.42078 2.23067 2.95121 3.13785 3.45278 3.49962 3.52375 3.61658 3.72752 3.91116 4.07907 4.25152 4.28393 4.41000 4.58717 4.74499 4.88797 5.13332 5.15764 5.24077 5.31013 5.35527 5.45335 5.52202 5.54804 5.57613 5.65309 5.69604 5.76766 5.87007 5.89888 5.96001 6.05769 6.15111 6.32080 6.40706 6.53619 6.62533 6.68739 6.76548 7.20032 7.22933 7.46113 7.56868 7.65670 7.75944 7.91986 8.25719 8.35699 9.31140 9.91479 10.58492 11.49632 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.025925 B = 0.002572 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.783917 B =10884.019881 C =11391.883604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.098 3.902 3 N -0.577 5.577 4 C 0.555 3.445 5 O -0.503 6.503 6 C 0.147 3.853 7 C -0.128 4.128 8 C -0.039 4.039 9 C -0.156 4.156 10 C 0.160 3.840 11 N -0.486 5.486 12 C 0.086 3.914 13 C -0.135 4.135 14 C 0.145 3.855 15 N -0.436 5.436 16 C 0.128 3.872 17 H 0.095 0.905 18 C -0.153 4.153 19 C 0.185 3.815 20 N -0.601 5.601 21 C -0.222 4.222 22 H 0.077 0.923 23 C -0.011 4.011 24 N -0.923 5.923 25 Si 0.912 3.088 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.282 1.282 29 C 0.125 3.875 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.068 0.932 34 H 0.111 0.889 35 H 0.157 0.843 36 H 0.152 0.848 37 H 0.168 0.832 38 H 0.160 0.840 39 H 0.148 0.852 40 H 0.055 0.945 41 H 0.073 0.927 42 H 0.044 0.956 43 H 0.043 0.957 44 H 0.251 0.749 45 H 0.045 0.955 46 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.344 -16.312 18.746 26.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.025 4.025 3 N -0.309 5.309 4 C 0.340 3.660 5 O -0.377 6.377 6 C -0.007 4.007 7 C -0.148 4.148 8 C -0.067 4.067 9 C -0.161 4.161 10 C -0.014 4.014 11 N -0.194 5.194 12 C -0.058 4.058 13 C -0.155 4.155 14 C 0.018 3.982 15 N -0.148 5.148 16 C 0.025 3.975 17 H 0.113 0.887 18 C -0.192 4.192 19 C 0.060 3.940 20 N -0.328 5.328 21 C -0.351 4.351 22 H 0.094 0.906 23 C -0.206 4.206 24 N -0.571 5.571 25 Si 0.743 3.257 26 H -0.217 1.217 27 H -0.217 1.217 28 H -0.208 1.208 29 C -0.001 4.001 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.128 0.872 35 H 0.175 0.825 36 H 0.170 0.830 37 H 0.185 0.815 38 H 0.177 0.823 39 H 0.166 0.834 40 H 0.074 0.926 41 H 0.092 0.908 42 H 0.063 0.937 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.063 0.937 46 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -9.543 -16.596 18.446 26.584 hybrid contribution 1.010 1.158 -0.571 1.639 sum -8.533 -15.437 17.875 25.112 Atomic orbital electron populations 1.22018 0.95981 1.01424 1.01588 1.22127 0.94746 0.81887 1.03701 1.47896 1.62291 1.14222 1.06463 1.17903 0.79416 0.86076 0.82645 1.90865 1.45778 1.15156 1.85864 1.21888 0.93636 0.90128 0.95084 1.21879 0.99297 1.02371 0.91304 1.21456 0.93476 0.92492 0.99280 1.19952 1.03075 0.97032 0.96008 1.23255 0.91253 0.89706 0.97156 1.67496 1.12225 1.10105 1.29603 1.22265 0.96505 0.99998 0.86998 1.21774 0.99672 0.93364 1.00686 1.19097 0.95955 0.94878 0.88289 1.68620 1.10803 1.07872 1.27531 1.22549 0.97209 0.94621 0.83156 0.88734 1.23242 0.98161 0.96386 1.01405 1.21058 0.81733 0.95471 0.95728 1.44318 1.03203 1.39621 1.45678 1.19043 0.85399 1.14199 1.16439 0.90556 1.24791 0.96886 0.99115 0.99855 1.69973 1.20831 1.30074 1.36202 0.86113 0.82107 0.78177 0.79348 1.21708 1.21725 1.20767 1.21875 0.92343 0.91143 0.94784 0.92218 0.92653 0.93078 0.91318 0.87180 0.82536 0.82998 0.81517 0.82283 0.83406 0.92633 0.90795 0.93742 0.93915 0.93857 0.93714 0.94920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.57 37.16 0.36 -1.28 16 2 C 0.10 1.16 5.73 -4.04 -0.02 1.14 16 3 N -0.58 -8.93 2.58 -164.58 -0.42 -9.35 16 4 C 0.55 8.99 6.88 -12.08 -0.08 8.91 16 5 O -0.50 -9.92 12.34 5.37 0.07 -9.86 16 6 C 0.15 1.89 6.54 -82.88 -0.54 1.35 16 7 C -0.13 -1.36 9.53 -39.42 -0.38 -1.74 16 8 C -0.04 -0.31 9.92 -39.29 -0.39 -0.70 16 9 C -0.16 -1.37 5.75 -106.74 -0.61 -1.98 16 10 C 0.16 1.18 11.05 -16.98 -0.19 1.00 16 11 N -0.49 -4.22 10.30 -13.18 -0.14 -4.36 16 12 C 0.09 0.64 11.05 -17.99 -0.20 0.44 16 13 C -0.13 -1.07 10.08 -39.32 -0.40 -1.47 16 14 C 0.15 1.46 6.63 -84.86 -0.56 0.89 16 15 N -0.44 -4.95 4.27 -7.49 -0.03 -4.98 16 16 C 0.13 2.37 3.56 -65.78 -0.23 2.14 16 17 H 0.09 1.64 7.77 -51.93 -0.40 1.24 16 18 C -0.15 -3.14 6.33 -24.90 -0.16 -3.29 16 19 C 0.19 4.77 5.37 -3.06 -0.02 4.76 16 20 N -0.60 -16.25 3.39 -170.08 -0.58 -16.83 16 21 C -0.22 -6.46 10.28 -15.06 -0.15 -6.62 16 22 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 23 C -0.01 -0.31 5.49 -17.43 -0.10 -0.40 16 24 N -0.92 -28.02 10.31 55.49 0.57 -27.45 16 25 Si 0.91 22.77 29.55 -169.99 -5.02 17.75 16 26 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 27 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 28 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 29 C 0.13 2.82 6.58 -2.53 -0.02 2.80 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.66 6.75 -51.93 -0.35 0.31 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.75 7.79 -51.93 -0.40 0.34 16 34 H 0.11 1.26 5.23 -52.65 -0.28 0.98 16 35 H 0.16 1.64 7.61 -52.49 -0.40 1.24 16 36 H 0.15 0.63 8.06 -52.49 -0.42 0.21 16 37 H 0.17 0.68 8.06 -52.49 -0.42 0.26 16 38 H 0.16 0.74 8.06 -52.49 -0.42 0.32 16 39 H 0.15 0.90 8.06 -52.49 -0.42 0.48 16 40 H 0.05 1.02 8.14 -51.92 -0.42 0.60 16 41 H 0.07 1.59 6.14 -51.93 -0.32 1.27 16 42 H 0.04 1.23 7.38 -51.93 -0.38 0.85 16 43 H 0.04 1.23 7.51 -51.93 -0.39 0.84 16 44 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 45 H 0.05 1.08 5.65 -51.93 -0.29 0.78 16 46 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 367.19 15.07 5.53 5.53 Total: -1.00 -34.84 367.19 -9.86 -44.70 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -6.15 Total: -1.10 kcal Atomic # 6 Polarization: 9.63 SS G_CDS: -3.69 Total: 5.94 kcal Atomic # 7 Polarization: -62.37 SS G_CDS: -0.60 Total: -62.97 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.07 Total: -9.86 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.84 -9.86 -44.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033971907.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.677 kcal (2) G-P(sol) polarization free energy of solvation -34.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds