Wall clock time and date at job start Sat Apr 11 2020 06:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36118 * 126.30991 * 2 1 4 4 N 1.30088 * 110.04118 * 179.97438 * 3 2 1 5 5 C 1.35859 * 109.53420 * 359.97438 * 4 3 2 6 6 C 1.39722 * 133.50698 * 180.02562 * 5 4 3 7 7 C 1.37835 * 120.10213 * 179.97438 * 6 5 4 8 8 C 1.38323 * 120.73413 * 0.02562 * 7 6 5 9 9 C 1.39405 * 120.27884 * 359.97326 * 8 7 6 10 10 C 1.47525 * 120.24695 * 179.97438 * 9 8 7 11 11 O 1.21597 * 119.99897 * 233.62489 * 10 9 8 12 12 N 1.34771 * 120.00279 * 53.62620 * 10 9 8 13 13 C 1.46657 * 125.33723 * 175.06524 * 12 10 9 14 14 C 1.53678 * 107.96950 * 179.28906 * 13 12 10 15 15 H 1.09007 * 113.31406 * 106.33614 * 14 13 12 16 16 C 1.53979 * 109.29583 * 233.05692 * 14 13 12 17 17 N 1.46760 * 106.67633 * 82.34718 * 16 14 13 18 18 C 1.36935 * 125.33471 * 198.42736 * 17 16 14 19 19 H 1.08004 * 119.99835 * 170.68416 * 18 17 16 20 20 C 1.38809 * 120.00300 * 350.68712 * 18 17 16 21 21 N 1.31618 * 119.99926 * 3.77841 * 20 18 17 22 22 Si 1.86796 * 120.00193 * 183.77795 * 20 18 17 23 23 H 1.48502 * 109.46906 * 94.99081 * 22 20 18 24 24 H 1.48501 * 109.47406 * 214.99432 * 22 20 18 25 25 H 1.48503 * 109.47329 * 334.99600 * 22 20 18 26 26 C 1.46658 * 109.32893 * 18.44856 * 17 16 14 27 27 C 1.53675 * 107.97348 * 359.29015 * 26 17 16 28 28 H 1.09008 * 112.77245 * 106.01399 * 27 26 17 29 29 C 1.46758 * 125.33279 * 355.05963 * 12 10 9 30 30 C 1.37512 * 126.30467 * 180.24242 * 2 1 3 31 31 H 1.08996 * 109.46980 * 95.54184 * 1 2 3 32 32 H 1.09001 * 109.47619 * 215.54437 * 1 2 3 33 33 H 1.08998 * 109.47311 * 335.54691 * 1 2 3 34 34 H 1.08002 * 124.98111 * 359.97438 * 3 2 1 35 35 H 1.07997 * 119.94577 * 359.97438 * 6 5 4 36 36 H 1.08007 * 119.63324 * 179.97438 * 7 6 5 37 37 H 1.07999 * 119.86300 * 179.97438 * 8 7 6 38 38 H 1.09004 * 109.77004 * 59.66386 * 13 12 10 39 39 H 1.08998 * 109.76756 * 298.91785 * 13 12 10 40 40 H 1.09005 * 110.01995 * 323.04168 * 16 14 13 41 41 H 1.09002 * 110.01622 * 201.64833 * 16 14 13 42 42 H 0.96998 * 120.00583 * 180.02562 * 21 20 18 43 43 H 1.09003 * 109.76618 * 239.66314 * 26 17 16 44 44 H 1.08994 * 109.77281 * 118.92275 * 26 17 16 45 45 H 1.09003 * 110.01578 * 79.15178 * 29 12 10 46 46 H 1.08996 * 110.02232 * 317.75911 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2711 1.0969 0.0000 4 7 3.5198 0.7324 0.0005 5 6 3.5972 -0.6239 0.0015 6 6 4.6638 -1.5266 0.0028 7 6 4.4211 -2.8834 0.0041 8 6 3.1263 -3.3699 0.0036 9 6 2.0449 -2.4903 0.0023 10 6 0.6642 -3.0100 0.0011 11 8 -0.1240 -2.6399 -0.8476 12 7 0.2764 -3.8949 0.9407 13 6 -1.0870 -4.4072 1.1122 14 6 -1.0762 -5.4010 2.2844 15 1 -1.5417 -5.0073 3.1880 16 6 -1.6952 -6.7345 1.8267 17 7 -0.6332 -7.4773 1.1379 18 6 -0.8290 -8.5268 0.2803 19 1 -0.0019 -8.9152 -0.2954 20 6 -2.0905 -9.0913 0.1509 21 7 -3.1135 -8.5713 0.7955 22 14 -2.3363 -10.5891 -0.9380 23 1 -2.2585 -11.8202 -0.1112 24 1 -3.6684 -10.5139 -1.5900 25 1 -1.2772 -10.6239 -1.9784 26 6 0.6705 -6.9198 1.5124 27 6 0.4261 -5.7491 2.4774 28 1 0.6774 -5.9936 3.5096 29 6 1.1524 -4.4969 1.9527 30 6 2.2792 -1.1082 -0.0047 31 1 -0.3633 -0.0992 -1.0228 32 1 -0.3634 -0.8362 0.5974 33 1 -0.3634 0.9355 0.4254 34 1 1.9246 2.1198 -0.0004 35 1 5.6798 -1.1605 0.0029 36 1 5.2513 -3.5744 0.0047 37 1 2.9524 -4.4358 0.0042 38 1 -1.4075 -4.9143 0.2021 39 1 -1.7653 -3.5833 1.3337 40 1 -2.5229 -6.5464 1.1428 41 1 -2.0454 -7.2993 2.6907 42 1 -3.9950 -8.9660 0.7054 43 1 1.1878 -6.5618 0.6222 44 1 1.2708 -7.6845 2.0051 45 1 1.3191 -3.7931 2.7682 46 1 2.1041 -4.7788 1.5023 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048898476.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:35 Heat of formation + Delta-G solvation = 85.876635 kcal Electronic energy + Delta-G solvation = -30132.721248 eV Core-core repulsion = 26217.251456 eV Total energy + Delta-G solvation = -3915.469792 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.39731 -40.28490 -38.33241 -37.23804 -34.99432 -34.27473 -32.34300 -31.11736 -30.15242 -29.68597 -29.47389 -27.21165 -25.77232 -25.51723 -24.10268 -22.88608 -22.38165 -21.40769 -20.11587 -19.45554 -19.18994 -17.76581 -17.27100 -16.86347 -16.54238 -16.08744 -15.92496 -15.68891 -15.14984 -14.76024 -14.60605 -13.94437 -13.90227 -13.72226 -13.39284 -13.20275 -13.13569 -12.96901 -12.65573 -12.28830 -12.07350 -11.98861 -11.82348 -11.69550 -11.67216 -11.40394 -10.96919 -10.85072 -10.54795 -10.46650 -10.40333 -10.13431 -10.04633 -9.91125 -9.75377 -9.67399 -8.65005 -8.57430 -8.47480 -8.20553 -6.84892 -5.77473 -3.12544 0.54988 1.31529 2.38886 2.45739 2.82033 3.11993 3.37737 3.43447 3.45136 3.66808 4.03686 4.29523 4.44679 4.51240 4.55737 4.70482 4.81242 4.98733 5.07069 5.09272 5.18281 5.20282 5.26272 5.42772 5.43885 5.45987 5.50728 5.59689 5.69741 5.73588 5.87136 5.88670 6.05886 6.13661 6.22722 6.24439 6.28785 6.32565 6.48865 6.58787 6.61272 6.66658 6.76907 6.89348 7.41949 7.54158 7.62504 7.63194 7.75245 8.18764 8.24374 9.17277 9.77746 10.41990 11.33311 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019284 B = 0.003000 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.642654 B = 9330.197118 C = 9720.031046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.486 5.486 3 C 0.258 3.742 4 N -0.495 5.495 5 C 0.038 3.962 6 C -0.046 4.046 7 C -0.132 4.132 8 C -0.068 4.068 9 C -0.111 4.111 10 C 0.570 3.430 11 O -0.539 6.539 12 N -0.598 5.598 13 C 0.122 3.878 14 C -0.125 4.125 15 H 0.089 0.911 16 C 0.180 3.820 17 N -0.599 5.599 18 C -0.229 4.229 19 H 0.077 0.923 20 C -0.005 4.005 21 N -0.920 5.920 22 Si 0.912 3.088 23 H -0.288 1.288 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.144 3.856 27 C -0.109 4.109 28 H 0.099 0.901 29 C 0.105 3.895 30 C 0.087 3.913 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.215 0.785 35 H 0.133 0.867 36 H 0.137 0.863 37 H 0.139 0.861 38 H 0.082 0.918 39 H 0.057 0.943 40 H 0.079 0.921 41 H 0.027 0.973 42 H 0.253 0.747 43 H 0.021 0.979 44 H 0.024 0.976 45 H 0.062 0.938 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.758 17.054 3.812 20.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.175 5.175 3 C -0.028 4.028 4 N -0.214 5.214 5 C -0.080 4.080 6 C -0.066 4.066 7 C -0.152 4.152 8 C -0.088 4.088 9 C -0.117 4.117 10 C 0.358 3.642 11 O -0.417 6.417 12 N -0.330 5.330 13 C 0.000 4.000 14 C -0.145 4.145 15 H 0.107 0.893 16 C 0.055 3.945 17 N -0.326 5.326 18 C -0.357 4.357 19 H 0.094 0.906 20 C -0.202 4.202 21 N -0.568 5.568 22 Si 0.742 3.258 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.206 1.206 26 C 0.018 3.982 27 C -0.128 4.128 28 H 0.117 0.883 29 C -0.018 4.018 30 C -0.025 4.025 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.104 0.896 34 H 0.231 0.769 35 H 0.151 0.849 36 H 0.155 0.845 37 H 0.157 0.843 38 H 0.100 0.900 39 H 0.075 0.925 40 H 0.097 0.903 41 H 0.045 0.955 42 H 0.063 0.937 43 H 0.039 0.961 44 H 0.042 0.958 45 H 0.081 0.919 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 10.711 17.703 3.226 20.941 hybrid contribution -1.002 -1.316 -0.508 1.730 sum 9.709 16.388 2.718 19.241 Atomic orbital electron populations 1.22120 0.75164 1.03877 1.04733 1.45233 1.07888 1.05272 1.59119 1.25379 0.85153 0.93403 0.98840 1.70503 1.18258 1.10541 1.22132 1.18997 0.91712 0.90341 1.06932 1.20401 0.97443 0.91386 0.97370 1.20837 0.96666 0.94755 1.02979 1.21198 0.91272 0.99350 0.96996 1.18725 0.93894 0.89837 1.09222 1.17803 0.87008 0.78802 0.80564 1.90795 1.54492 1.59924 1.36526 1.48194 1.11388 1.42304 1.31097 1.21907 0.81877 0.96078 1.00122 1.23227 0.96011 0.98504 0.96767 0.89316 1.21232 0.91548 0.85410 0.96287 1.44176 0.99411 1.36626 1.52354 1.19021 0.95032 1.05978 1.15652 0.90557 1.24826 0.95888 0.99295 1.00173 1.69914 0.99481 1.41376 1.45983 0.86096 0.77257 0.82719 0.79694 1.21570 1.21700 1.20602 1.21140 0.90156 0.92554 0.94331 1.22851 0.95543 0.94409 1.00020 0.88303 1.22173 0.94206 0.94600 0.90789 1.18542 0.91337 0.87988 1.04620 0.89702 0.89931 0.89620 0.76875 0.84943 0.84508 0.84312 0.90005 0.92462 0.90258 0.95456 0.93653 0.96111 0.95803 0.91942 0.90367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.83 9.57 59.85 0.57 1.41 16 2 N -0.49 -5.79 3.19 -122.94 -0.39 -6.18 16 3 C 0.26 2.63 12.50 -89.73 -1.12 1.51 16 4 N -0.50 -6.41 11.28 -12.04 -0.14 -6.55 16 5 C 0.04 0.51 7.22 -84.71 -0.61 -0.10 16 6 C -0.05 -0.52 10.09 -39.17 -0.40 -0.91 16 7 C -0.13 -1.34 9.99 -39.70 -0.40 -1.73 16 8 C -0.07 -0.83 8.22 -39.12 -0.32 -1.15 16 9 C -0.11 -1.59 5.28 -104.95 -0.55 -2.15 16 10 C 0.57 9.41 5.98 -12.48 -0.07 9.33 16 11 O -0.54 -10.34 15.11 5.28 0.08 -10.26 16 12 N -0.60 -9.45 3.31 -173.57 -0.57 -10.03 16 13 C 0.12 2.12 6.24 -3.60 -0.02 2.09 16 14 C -0.12 -2.13 4.09 -88.48 -0.36 -2.49 16 15 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 16 C 0.18 4.10 4.63 -3.39 -0.02 4.09 16 17 N -0.60 -14.64 3.38 -171.88 -0.58 -15.22 16 18 C -0.23 -6.23 10.23 -15.06 -0.15 -6.39 16 19 H 0.08 2.04 7.83 -52.48 -0.41 1.63 16 20 C -0.01 -0.15 5.49 -17.43 -0.10 -0.25 16 21 N -0.92 -26.25 10.32 55.49 0.57 -25.68 16 22 Si 0.91 21.89 29.55 -169.99 -5.02 16.87 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 C 0.14 2.80 6.63 -3.60 -0.02 2.77 16 27 C -0.11 -1.67 4.09 -88.48 -0.36 -2.03 16 28 H 0.10 1.32 8.14 -51.92 -0.42 0.90 16 29 C 0.11 1.41 5.59 -3.39 -0.02 1.39 16 30 C 0.09 1.22 6.78 -83.77 -0.57 0.65 16 31 H 0.08 0.93 7.92 -51.93 -0.41 0.52 16 32 H 0.08 0.99 6.32 -51.93 -0.33 0.67 16 33 H 0.09 0.53 8.13 -51.93 -0.42 0.10 16 34 H 0.21 1.11 8.06 -52.49 -0.42 0.68 16 35 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 36 H 0.14 0.98 8.06 -52.48 -0.42 0.55 16 37 H 0.14 1.59 6.54 -52.49 -0.34 1.24 16 38 H 0.08 1.73 7.47 -51.93 -0.39 1.35 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.08 2.05 6.36 -51.93 -0.33 1.72 16 41 H 0.03 0.68 8.02 -51.93 -0.42 0.26 16 42 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 43 H 0.02 0.41 7.47 -51.93 -0.39 0.02 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 46 H 0.08 0.95 4.79 -51.93 -0.25 0.70 16 LS Contribution 364.11 15.07 5.49 5.49 Total: -1.00 -34.05 364.11 -11.30 -45.34 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -6.20 Total: 0.16 kcal Atomic # 6 Polarization: 10.57 SS G_CDS: -4.52 Total: 6.05 kcal Atomic # 7 Polarization: -62.54 SS G_CDS: -1.11 Total: -63.65 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.08 Total: -10.26 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.05 -11.30 -45.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048898476.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.221 kcal (2) G-P(sol) polarization free energy of solvation -34.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds