Wall clock time and date at job start Sat Apr 11 2020 06:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36094 * 126.30101 * 2 1 4 4 N 1.30066 * 110.12431 * 180.02562 * 3 2 1 5 5 C 1.35869 * 109.56218 * 0.02562 * 4 3 2 6 6 C 1.39406 * 133.51811 * 180.34839 * 5 4 3 7 7 C 1.39121 * 119.50679 * 180.11793 * 6 5 4 8 8 C 1.47680 * 119.90233 * 179.79494 * 7 6 5 9 9 O 1.21574 * 120.00331 * 154.84096 * 8 7 6 10 10 N 1.34781 * 120.00148 * 334.83833 * 8 7 6 11 11 C 1.46758 * 125.33035 * 354.44173 * 10 8 7 12 12 C 1.53983 * 106.67319 * 198.44425 * 11 10 8 13 13 H 1.09004 * 112.25579 * 93.84565 * 12 11 10 14 14 C 1.53675 * 109.90332 * 220.92648 * 12 11 10 15 15 N 1.46663 * 107.96845 * 93.31005 * 14 12 11 16 16 C 1.36935 * 125.33198 * 179.29224 * 15 14 12 17 17 H 1.08006 * 120.00055 * 4.70466 * 16 15 14 18 18 C 1.38806 * 119.99900 * 184.70931 * 16 15 14 19 19 N 1.31615 * 120.00511 * 4.97077 * 18 16 15 20 20 Si 1.86802 * 120.00011 * 184.97288 * 18 16 15 21 21 H 1.48504 * 109.47293 * 84.99966 * 20 18 16 22 22 H 1.48503 * 109.47205 * 205.00025 * 20 18 16 23 23 H 1.48499 * 109.47045 * 324.99660 * 20 18 16 24 24 C 1.48700 * 109.52141 * 359.16228 * 15 14 12 25 25 C 1.53981 * 105.70503 * 18.56424 * 24 15 14 26 26 H 1.09006 * 112.79919 * 94.38437 * 25 24 15 27 27 C 1.46651 * 125.33782 * 174.43214 * 10 8 7 28 28 C 1.40137 * 120.19621 * 359.51859 * 7 6 5 29 29 C 1.36438 * 120.45501 * 0.23150 * 28 7 6 30 30 C 1.37793 * 126.30198 * 180.02562 * 2 1 3 31 31 H 1.08998 * 109.46845 * 269.95459 * 1 2 3 32 32 H 1.09006 * 109.47196 * 29.94990 * 1 2 3 33 33 H 1.08997 * 109.47445 * 149.95517 * 1 2 3 34 34 H 1.08000 * 124.93769 * 0.02562 * 3 2 1 35 35 H 1.08003 * 120.24687 * 359.89099 * 6 5 4 36 36 H 1.09003 * 110.01484 * 317.74406 * 11 10 8 37 37 H 1.08993 * 110.02144 * 79.13968 * 11 10 8 38 38 H 1.08999 * 109.76818 * 212.93709 * 14 12 11 39 39 H 1.08996 * 109.76702 * 333.68344 * 14 12 11 40 40 H 0.97000 * 120.00696 * 180.02562 * 19 18 16 41 41 H 1.09005 * 110.28617 * 259.68319 * 24 15 14 42 42 H 1.08997 * 110.69679 * 137.66388 * 24 15 14 43 43 H 1.09000 * 109.76694 * 59.66537 * 27 10 8 44 44 H 1.09003 * 109.77019 * 298.93072 * 27 10 8 45 45 H 1.07998 * 119.77310 * 180.26027 * 28 7 6 46 46 H 1.08002 * 119.92359 * 180.02562 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2708 1.0968 0.0000 4 7 3.5199 0.7344 -0.0005 5 6 3.6002 -0.6219 -0.0015 6 6 4.6660 -1.5204 0.0038 7 6 4.4095 -2.8878 -0.0017 8 6 5.5320 -3.8474 -0.0007 9 8 5.3732 -4.9683 0.4426 10 7 6.7325 -3.4807 -0.4914 11 6 7.0238 -2.2056 -1.1570 12 6 8.3321 -2.4066 -1.9438 13 1 8.1509 -2.6948 -2.9793 14 6 9.2221 -1.1615 -1.8059 15 7 10.1360 -1.3811 -0.6799 16 6 11.0931 -0.4996 -0.2533 17 1 11.1696 0.4767 -0.7087 18 6 11.9650 -0.8609 0.7645 19 7 11.9369 -2.0829 1.2524 20 14 13.1784 0.3875 1.4419 21 1 12.5160 1.2023 2.4920 22 1 14.3438 -0.3224 2.0278 23 1 13.6401 1.2749 0.3444 24 6 9.8618 -2.7089 -0.0691 25 6 9.0765 -3.5017 -1.1302 26 1 9.7179 -4.1296 -1.7487 27 6 7.9524 -4.2933 -0.4438 28 6 3.0891 -3.3572 -0.0022 29 6 2.0435 -2.4807 -0.0021 30 6 2.2808 -1.1105 -0.0005 31 1 -0.3633 -0.0008 1.0277 32 1 -0.3634 0.8905 -0.5131 33 1 -0.3634 -0.8895 -0.5145 34 1 1.9234 2.1194 0.0004 35 1 5.6833 -1.1578 0.0083 36 1 6.2139 -1.9474 -1.8393 37 1 7.1522 -1.4180 -0.4146 38 1 9.7944 -1.0141 -2.7218 39 1 8.6031 -0.2854 -1.6127 40 1 12.5460 -2.3353 1.9639 41 1 9.2592 -2.5932 0.8319 42 1 10.7929 -3.2236 0.1678 43 1 7.7896 -5.2339 -0.9699 44 1 8.2222 -4.4928 0.5933 45 1 2.8978 -4.4201 -0.0021 46 1 1.0293 -2.8519 -0.0021 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048904448.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:39 Heat of formation + Delta-G solvation = 93.384191 kcal Electronic energy + Delta-G solvation = -29482.529060 eV Core-core repulsion = 25567.384820 eV Total energy + Delta-G solvation = -3915.144240 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.38661 -40.29920 -38.37005 -36.87954 -34.95343 -34.52923 -32.35548 -31.35554 -29.80204 -29.68281 -29.38797 -27.44362 -25.63234 -25.53554 -24.12407 -23.07587 -22.15572 -21.05227 -20.16177 -19.58278 -19.20866 -17.71215 -17.23618 -16.99258 -16.60902 -16.16768 -15.98577 -15.23736 -14.80487 -14.74860 -14.32152 -14.16333 -13.83969 -13.64061 -13.63226 -13.42194 -13.25821 -12.99338 -12.85146 -12.44632 -12.09521 -11.91421 -11.77079 -11.64689 -11.40528 -11.28146 -10.91778 -10.79190 -10.64342 -10.42951 -10.19684 -10.08505 -9.98657 -9.80245 -9.69801 -9.46723 -8.66536 -8.61915 -8.35892 -8.28378 -6.81684 -5.61291 -3.06261 0.73400 0.96456 2.28117 2.52760 2.98139 3.20321 3.42985 3.47834 3.49346 3.78041 4.02331 4.24089 4.26067 4.50948 4.58215 4.65032 4.73809 4.85915 4.92015 5.04328 5.12463 5.16416 5.25076 5.30972 5.42613 5.52947 5.60424 5.66147 5.73274 5.84670 5.87887 6.01720 6.10872 6.20335 6.22028 6.28153 6.29643 6.38151 6.53081 6.58978 6.62230 6.70744 6.81041 6.87873 7.45979 7.61775 7.67590 7.73995 7.86729 8.33287 8.36118 9.22342 9.84719 10.47504 11.40186 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013641 B = 0.003048 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.169457 B = 9183.912841 C =10480.360298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.499 5.499 3 C 0.255 3.745 4 N -0.483 5.483 5 C 0.035 3.965 6 C -0.030 4.030 7 C -0.137 4.137 8 C 0.575 3.425 9 O -0.544 6.544 10 N -0.603 5.603 11 C 0.105 3.895 12 C -0.109 4.109 13 H 0.089 0.911 14 C 0.148 3.852 15 N -0.603 5.603 16 C -0.223 4.223 17 H 0.078 0.922 18 C -0.010 4.010 19 N -0.921 5.921 20 Si 0.914 3.086 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.282 1.282 24 C 0.157 3.843 25 C -0.120 4.120 26 H 0.093 0.907 27 C 0.120 3.880 28 C -0.046 4.046 29 C -0.122 4.122 30 C 0.065 3.935 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.215 0.785 35 H 0.152 0.848 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.026 0.974 39 H 0.026 0.974 40 H 0.252 0.748 41 H 0.016 0.984 42 H 0.110 0.890 43 H 0.062 0.938 44 H 0.073 0.927 45 H 0.141 0.859 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.397 1.741 -5.656 25.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.189 5.189 3 C -0.031 4.031 4 N -0.200 5.200 5 C -0.082 4.082 6 C -0.049 4.049 7 C -0.142 4.142 8 C 0.365 3.635 9 O -0.423 6.423 10 N -0.335 5.335 11 C -0.017 4.017 12 C -0.129 4.129 13 H 0.107 0.893 14 C 0.021 3.979 15 N -0.330 5.330 16 C -0.351 4.351 17 H 0.095 0.905 18 C -0.206 4.206 19 N -0.569 5.569 20 Si 0.745 3.255 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.208 1.208 24 C 0.033 3.967 25 C -0.140 4.140 26 H 0.112 0.888 27 C -0.003 4.003 28 C -0.066 4.066 29 C -0.143 4.143 30 C -0.046 4.046 31 H 0.094 0.906 32 H 0.108 0.892 33 H 0.102 0.898 34 H 0.231 0.769 35 H 0.170 0.830 36 H 0.090 0.910 37 H 0.097 0.903 38 H 0.044 0.956 39 H 0.044 0.956 40 H 0.063 0.937 41 H 0.034 0.966 42 H 0.128 0.872 43 H 0.080 0.920 44 H 0.092 0.908 45 H 0.158 0.842 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -23.785 1.681 -5.239 24.413 hybrid contribution -0.311 0.399 0.440 0.671 sum -24.097 2.080 -4.798 24.658 Atomic orbital electron populations 1.21987 0.76022 1.04700 1.03558 1.45307 1.07358 1.05567 1.60693 1.25412 0.85097 0.93354 0.99221 1.70522 1.18162 1.10762 1.20600 1.18894 0.91844 0.90267 1.07214 1.21204 0.99296 0.90465 0.93960 1.19603 0.93952 0.92560 1.08128 1.17734 0.81211 0.86658 0.77911 1.90758 1.82840 1.20876 1.47860 1.48159 1.09020 1.19010 1.57262 1.22475 0.97400 0.86063 0.95763 1.22828 0.93840 0.97679 0.98519 0.89310 1.21019 0.91304 0.93569 0.91966 1.44712 1.38037 1.17553 1.32665 1.19057 1.06664 0.94602 1.14815 0.90456 1.24777 0.99522 0.96798 0.99514 1.69732 1.40278 1.16722 1.30208 0.86097 0.80449 0.80096 0.78884 1.21617 1.21720 1.20754 1.22147 0.99354 0.85099 0.90130 1.23212 0.95778 0.96380 0.98621 0.88840 1.21807 0.83033 0.93775 1.01637 1.20627 0.90109 1.00130 0.95748 1.19534 0.99674 0.88457 1.06663 1.19069 0.91288 0.89506 1.04689 0.90649 0.89242 0.89762 0.76866 0.83037 0.91019 0.90306 0.95601 0.95630 0.93697 0.96634 0.87200 0.91975 0.90828 0.84164 0.85614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.28 11.17 59.85 0.67 0.95 16 2 N -0.50 -4.23 3.20 -123.12 -0.39 -4.62 16 3 C 0.25 2.33 12.50 -89.77 -1.12 1.21 16 4 N -0.48 -6.62 11.28 -12.06 -0.14 -6.76 16 5 C 0.04 0.50 7.22 -84.72 -0.61 -0.11 16 6 C -0.03 -0.44 8.22 -38.82 -0.32 -0.76 16 7 C -0.14 -2.03 5.67 -105.00 -0.60 -2.62 16 8 C 0.58 9.95 7.61 -12.40 -0.09 9.86 16 9 O -0.54 -10.76 16.90 5.30 0.09 -10.67 16 10 N -0.60 -10.23 3.31 -173.52 -0.57 -10.81 16 11 C 0.11 1.67 4.32 -3.39 -0.01 1.66 16 12 C -0.11 -1.82 4.06 -88.48 -0.36 -2.18 16 13 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 14 C 0.15 2.96 6.61 -3.60 -0.02 2.94 16 15 N -0.60 -15.09 3.43 -170.30 -0.58 -15.67 16 16 C -0.22 -6.15 10.24 -15.06 -0.15 -6.30 16 17 H 0.08 2.06 7.83 -52.48 -0.41 1.65 16 18 C -0.01 -0.29 5.47 -17.43 -0.10 -0.39 16 19 N -0.92 -26.70 10.08 55.49 0.56 -26.14 16 20 Si 0.91 22.15 29.56 -169.99 -5.02 17.13 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 24 C 0.16 3.71 5.28 -2.31 -0.01 3.70 16 25 C -0.12 -2.20 4.04 -88.48 -0.36 -2.56 16 26 H 0.09 1.62 8.14 -51.93 -0.42 1.19 16 27 C 0.12 2.09 6.20 -3.61 -0.02 2.06 16 28 C -0.05 -0.57 9.51 -39.52 -0.38 -0.94 16 29 C -0.12 -1.28 9.97 -39.93 -0.40 -1.68 16 30 C 0.06 0.75 6.87 -83.95 -0.58 0.17 16 31 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.09 0.11 8.14 -51.93 -0.42 -0.32 16 33 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.21 0.92 8.06 -52.49 -0.42 0.49 16 35 H 0.15 2.37 4.43 -52.48 -0.23 2.14 16 36 H 0.07 1.00 7.17 -51.93 -0.37 0.63 16 37 H 0.08 1.38 5.83 -51.93 -0.30 1.08 16 38 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.03 0.51 7.66 -51.93 -0.40 0.11 16 40 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 41 H 0.02 0.40 7.57 -51.93 -0.39 0.01 16 42 H 0.11 2.95 5.81 -51.93 -0.30 2.64 16 43 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.07 1.38 7.62 -51.93 -0.40 0.99 16 45 H 0.14 1.60 7.82 -52.49 -0.41 1.19 16 46 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 367.19 15.07 5.53 5.53 Total: -1.00 -35.23 367.19 -11.15 -46.38 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -6.16 Total: 0.63 kcal Atomic # 6 Polarization: 9.47 SS G_CDS: -4.46 Total: 5.01 kcal Atomic # 7 Polarization: -62.87 SS G_CDS: -1.13 Total: -64.00 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.09 Total: -10.67 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.23 -11.15 -46.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048904448.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.760 kcal (2) G-P(sol) polarization free energy of solvation -35.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds