Wall clock time and date at job start Sat Apr 11 2020 06:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36094 * 126.30101 * 2 1 4 4 N 1.30066 * 110.12431 * 180.02562 * 3 2 1 5 5 C 1.35869 * 109.56218 * 0.02562 * 4 3 2 6 6 C 1.39406 * 133.51811 * 180.34839 * 5 4 3 7 7 C 1.39121 * 119.50679 * 180.11793 * 6 5 4 8 8 C 1.47680 * 119.90233 * 179.79494 * 7 6 5 9 9 O 1.21574 * 120.00331 * 154.84096 * 8 7 6 10 10 N 1.34781 * 120.00148 * 334.83833 * 8 7 6 11 11 C 1.46758 * 125.33035 * 354.44173 * 10 8 7 12 12 C 1.53983 * 106.67319 * 198.44425 * 11 10 8 13 13 H 1.09004 * 112.25579 * 93.84565 * 12 11 10 14 14 C 1.53675 * 109.90332 * 220.92648 * 12 11 10 15 15 N 1.46663 * 107.96845 * 93.31005 * 14 12 11 16 16 C 1.36935 * 125.33198 * 179.29224 * 15 14 12 17 17 H 1.08006 * 120.00055 * 4.70466 * 16 15 14 18 18 C 1.38806 * 119.99900 * 184.70931 * 16 15 14 19 19 N 1.31615 * 120.00511 * 4.97077 * 18 16 15 20 20 Si 1.86802 * 120.00011 * 184.97288 * 18 16 15 21 21 H 1.48504 * 109.47293 * 84.99966 * 20 18 16 22 22 H 1.48503 * 109.47205 * 205.00025 * 20 18 16 23 23 H 1.48499 * 109.47045 * 324.99660 * 20 18 16 24 24 C 1.48700 * 109.52141 * 359.16228 * 15 14 12 25 25 C 1.53981 * 105.70503 * 18.56424 * 24 15 14 26 26 H 1.09006 * 112.79919 * 94.38437 * 25 24 15 27 27 C 1.46651 * 125.33782 * 174.43214 * 10 8 7 28 28 C 1.40137 * 120.19621 * 359.51859 * 7 6 5 29 29 C 1.36438 * 120.45501 * 0.23150 * 28 7 6 30 30 C 1.37793 * 126.30198 * 180.02562 * 2 1 3 31 31 H 1.08998 * 109.46845 * 269.95459 * 1 2 3 32 32 H 1.09006 * 109.47196 * 29.94990 * 1 2 3 33 33 H 1.08997 * 109.47445 * 149.95517 * 1 2 3 34 34 H 1.08000 * 124.93769 * 0.02562 * 3 2 1 35 35 H 1.08003 * 120.24687 * 359.89099 * 6 5 4 36 36 H 1.09003 * 110.01484 * 317.74406 * 11 10 8 37 37 H 1.08993 * 110.02144 * 79.13968 * 11 10 8 38 38 H 1.08999 * 109.76818 * 212.93709 * 14 12 11 39 39 H 1.08996 * 109.76702 * 333.68344 * 14 12 11 40 40 H 0.97000 * 120.00696 * 180.02562 * 19 18 16 41 41 H 1.09005 * 110.28617 * 259.68319 * 24 15 14 42 42 H 1.08997 * 110.69679 * 137.66388 * 24 15 14 43 43 H 1.09000 * 109.76694 * 59.66537 * 27 10 8 44 44 H 1.09003 * 109.77019 * 298.93072 * 27 10 8 45 45 H 1.07998 * 119.77310 * 180.26027 * 28 7 6 46 46 H 1.08002 * 119.92359 * 180.02562 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2708 1.0968 0.0000 4 7 3.5199 0.7344 -0.0005 5 6 3.6002 -0.6219 -0.0015 6 6 4.6660 -1.5204 0.0038 7 6 4.4095 -2.8878 -0.0017 8 6 5.5320 -3.8474 -0.0007 9 8 5.3732 -4.9683 0.4426 10 7 6.7325 -3.4807 -0.4914 11 6 7.0238 -2.2056 -1.1570 12 6 8.3321 -2.4066 -1.9438 13 1 8.1509 -2.6948 -2.9793 14 6 9.2221 -1.1615 -1.8059 15 7 10.1360 -1.3811 -0.6799 16 6 11.0931 -0.4996 -0.2533 17 1 11.1696 0.4767 -0.7087 18 6 11.9650 -0.8609 0.7645 19 7 11.9369 -2.0829 1.2524 20 14 13.1784 0.3875 1.4419 21 1 12.5160 1.2023 2.4920 22 1 14.3438 -0.3224 2.0278 23 1 13.6401 1.2749 0.3444 24 6 9.8618 -2.7089 -0.0691 25 6 9.0765 -3.5017 -1.1302 26 1 9.7179 -4.1296 -1.7487 27 6 7.9524 -4.2933 -0.4438 28 6 3.0891 -3.3572 -0.0022 29 6 2.0435 -2.4807 -0.0021 30 6 2.2808 -1.1105 -0.0005 31 1 -0.3633 -0.0008 1.0277 32 1 -0.3634 0.8905 -0.5131 33 1 -0.3634 -0.8895 -0.5145 34 1 1.9234 2.1194 0.0004 35 1 5.6833 -1.1578 0.0083 36 1 6.2139 -1.9474 -1.8393 37 1 7.1522 -1.4180 -0.4146 38 1 9.7944 -1.0141 -2.7218 39 1 8.6031 -0.2854 -1.6127 40 1 12.5460 -2.3353 1.9639 41 1 9.2592 -2.5932 0.8319 42 1 10.7929 -3.2236 0.1678 43 1 7.7896 -5.2339 -0.9699 44 1 8.2222 -4.4928 0.5933 45 1 2.8978 -4.4201 -0.0021 46 1 1.0293 -2.8519 -0.0021 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048904448.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:38 Heat of formation + Delta-G solvation = 71.892806 kcal Electronic energy + Delta-G solvation = -29483.460997 eV Core-core repulsion = 25567.384820 eV Total energy + Delta-G solvation = -3916.076176 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.19933 -41.67500 -39.78853 -37.93081 -36.63247 -35.25355 -34.16626 -32.64496 -31.17993 -31.07055 -30.56530 -28.04591 -27.31736 -27.11717 -25.42984 -24.15534 -23.34711 -22.07497 -21.75779 -20.77733 -20.69739 -18.96056 -18.61356 -18.03459 -17.87833 -17.41652 -16.80259 -16.58180 -16.47623 -15.87078 -15.80980 -15.40034 -15.11441 -14.89927 -14.68392 -14.52183 -14.33260 -14.07459 -13.78034 -13.64777 -13.52409 -13.38934 -13.17465 -13.07497 -12.77339 -12.71206 -12.62293 -12.51337 -11.99937 -11.93117 -11.82149 -11.52531 -11.42196 -11.25098 -11.15842 -10.94187 -10.76155 -9.79215 -9.44709 -9.21410 -8.86670 -7.73452 -5.20930 -0.24458 0.04325 1.46804 1.49303 1.57036 1.62534 1.67626 1.87539 1.90445 2.50829 2.76220 3.11943 3.31143 3.33428 3.45404 3.58023 3.69528 3.85283 3.87095 3.93227 4.01727 4.14036 4.24453 4.27429 4.35585 4.43922 4.49942 4.50523 4.51160 4.58278 4.69591 4.77371 4.81762 4.88397 4.95800 4.98223 5.08027 5.13593 5.27018 5.33260 5.34767 5.38310 5.47862 5.60187 5.68542 5.84652 6.17123 6.31456 6.39167 6.82541 6.98217 7.11107 7.79620 8.42389 9.25622 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013641 B = 0.003048 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.169457 B = 9183.912841 C =10480.360298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.491 5.491 3 C 0.274 3.726 4 N -0.540 5.540 5 C 0.009 3.991 6 C -0.047 4.047 7 C -0.149 4.149 8 C 0.573 3.427 9 O -0.576 6.576 10 N -0.605 5.605 11 C 0.115 3.885 12 C -0.094 4.094 13 H 0.129 0.871 14 C 0.143 3.857 15 N -0.625 5.625 16 C -0.236 4.236 17 H 0.082 0.918 18 C -0.068 4.068 19 N -0.948 5.948 20 Si 0.978 3.022 21 H -0.290 1.290 22 H -0.294 1.294 23 H -0.267 1.267 24 C 0.166 3.834 25 C -0.108 4.108 26 H 0.112 0.888 27 C 0.125 3.875 28 C -0.058 4.058 29 C -0.101 4.101 30 C 0.061 3.939 31 H 0.088 0.912 32 H 0.119 0.881 33 H 0.095 0.905 34 H 0.261 0.739 35 H 0.133 0.867 36 H 0.096 0.904 37 H 0.056 0.944 38 H 0.037 0.963 39 H 0.029 0.971 40 H 0.246 0.754 41 H -0.021 1.021 42 H 0.076 0.924 43 H 0.082 0.918 44 H 0.049 0.951 45 H 0.148 0.852 46 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.870 3.032 -7.345 28.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.180 5.180 3 C -0.012 4.012 4 N -0.259 5.259 5 C -0.108 4.108 6 C -0.066 4.066 7 C -0.154 4.154 8 C 0.364 3.636 9 O -0.457 6.457 10 N -0.336 5.336 11 C -0.007 4.007 12 C -0.113 4.113 13 H 0.147 0.853 14 C 0.017 3.983 15 N -0.351 5.351 16 C -0.365 4.365 17 H 0.100 0.900 18 C -0.261 4.261 19 N -0.598 5.598 20 Si 0.806 3.194 21 H -0.218 1.218 22 H -0.221 1.221 23 H -0.192 1.192 24 C 0.041 3.959 25 C -0.128 4.128 26 H 0.130 0.870 27 C 0.002 3.998 28 C -0.078 4.078 29 C -0.122 4.122 30 C -0.051 4.051 31 H 0.106 0.894 32 H 0.137 0.863 33 H 0.114 0.886 34 H 0.277 0.723 35 H 0.150 0.850 36 H 0.115 0.885 37 H 0.074 0.926 38 H 0.055 0.945 39 H 0.047 0.953 40 H 0.055 0.945 41 H -0.003 1.003 42 H 0.094 0.906 43 H 0.101 0.899 44 H 0.068 0.932 45 H 0.166 0.834 46 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -27.310 3.001 -6.964 28.343 hybrid contribution 0.612 0.146 0.992 1.175 sum -26.698 3.147 -5.972 27.538 Atomic orbital electron populations 1.22423 0.72648 1.06859 1.05083 1.45648 1.09156 1.04190 1.58961 1.26334 0.84030 0.95160 0.95671 1.70482 1.21061 1.10745 1.23626 1.19070 0.92917 0.90884 1.07970 1.21006 0.98942 0.90850 0.95831 1.19461 0.94079 0.91881 1.10013 1.18197 0.81675 0.86719 0.76992 1.90722 1.83446 1.22316 1.49232 1.48217 1.08889 1.19164 1.57376 1.22399 0.97907 0.84993 0.95400 1.22862 0.92934 0.95099 1.00449 0.85279 1.21204 0.91129 0.95364 0.90559 1.45013 1.38392 1.17684 1.34001 1.19443 1.06957 0.95295 1.14797 0.89996 1.25611 1.01631 0.98587 1.00249 1.70005 1.40953 1.18328 1.30495 0.85099 0.78023 0.77977 0.78276 1.21760 1.22083 1.19177 1.21815 0.97860 0.85397 0.90820 1.23022 0.95704 0.96587 0.97445 0.87025 1.21684 0.83111 0.94596 1.00428 1.20752 0.89500 1.00954 0.96614 1.19853 1.00873 0.87638 1.03790 1.19249 0.90950 0.90717 1.04201 0.89365 0.86276 0.88598 0.72308 0.84999 0.88543 0.92615 0.94543 0.95289 0.94466 1.00255 0.90589 0.89942 0.93227 0.83424 0.81636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.15 11.17 127.77 1.43 1.58 16 2 N -0.49 -6.55 3.20 -543.45 -1.74 -8.29 16 3 C 0.27 4.20 12.50 180.05 2.25 6.45 16 4 N -0.54 -14.41 11.28 -192.07 -2.17 -16.57 16 5 C 0.01 0.25 7.22 39.40 0.28 0.53 16 6 C -0.05 -1.43 8.22 22.76 0.19 -1.25 16 7 C -0.15 -4.49 5.67 -20.11 -0.11 -4.61 16 8 C 0.57 20.39 7.61 86.74 0.66 21.05 16 9 O -0.58 -23.38 16.90 -3.95 -0.07 -23.45 16 10 N -0.61 -21.05 3.31 -821.14 -2.72 -23.77 16 11 C 0.12 3.69 4.32 86.66 0.37 4.07 16 12 C -0.09 -3.05 4.06 -9.40 -0.04 -3.08 16 13 H 0.13 3.25 8.14 -2.38 -0.02 3.23 16 14 C 0.14 5.69 6.61 86.58 0.57 6.26 16 15 N -0.62 -32.17 3.43 -692.69 -2.37 -34.54 16 16 C -0.24 -13.33 10.24 84.03 0.86 -12.47 16 17 H 0.08 4.43 7.83 -2.91 -0.02 4.40 16 18 C -0.07 -3.94 5.47 84.86 0.46 -3.47 16 19 N -0.95 -57.57 10.08 21.65 0.22 -57.35 16 20 Si 0.98 46.65 29.56 68.60 2.03 48.68 16 21 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 22 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 23 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 24 C 0.17 8.26 5.28 86.29 0.46 8.72 16 25 C -0.11 -3.98 4.04 -9.41 -0.04 -4.02 16 26 H 0.11 3.76 8.14 -2.38 -0.02 3.74 16 27 C 0.12 4.44 6.20 86.58 0.54 4.98 16 28 C -0.06 -1.37 9.51 22.31 0.21 -1.16 16 29 C -0.10 -1.84 9.97 22.05 0.22 -1.62 16 30 C 0.06 1.27 6.87 39.00 0.27 1.54 16 31 H 0.09 0.05 8.14 -2.39 -0.02 0.03 16 32 H 0.12 -0.39 8.14 -2.38 -0.02 -0.40 16 33 H 0.10 0.05 8.14 -2.39 -0.02 0.03 16 34 H 0.26 1.07 8.06 -2.91 -0.02 1.04 16 35 H 0.13 4.45 4.43 -2.91 -0.01 4.44 16 36 H 0.10 2.63 7.17 -2.39 -0.02 2.61 16 37 H 0.06 2.07 5.83 -2.39 -0.01 2.05 16 38 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.03 1.15 7.66 -2.39 -0.02 1.13 16 40 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 41 H -0.02 -1.15 7.57 -2.38 -0.02 -1.17 16 42 H 0.08 4.33 5.81 -2.39 -0.01 4.32 16 43 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 44 H 0.05 2.00 7.62 -2.39 -0.02 1.98 16 45 H 0.15 3.22 7.82 -2.91 -0.02 3.20 16 46 H 0.17 1.63 8.06 -2.91 -0.02 1.61 16 Total: -1.00 -82.30 367.19 2.77 -79.53 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: 1.01 Total: 12.28 kcal Atomic # 6 Polarization: 14.91 SS G_CDS: 8.58 Total: 23.49 kcal Atomic # 7 Polarization: -131.75 SS G_CDS: -8.78 Total: -140.53 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -0.07 Total: -23.45 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Total: -82.30 2.77 -79.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048904448.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.424 kcal (2) G-P(sol) polarization free energy of solvation -82.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds