Wall clock time and date at job start Sat Apr 11 2020 06:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28386 * 124.37006 * 2 1 4 4 C 1.31571 * 111.96451 * 180.16503 * 3 2 1 5 5 C 1.47396 * 126.82300 * 179.81031 * 4 3 2 6 6 O 1.21613 * 120.00072 * 179.68334 * 5 4 3 7 7 N 1.34777 * 119.99620 * 359.95532 * 5 4 3 8 8 C 1.46674 * 125.33431 * 179.72350 * 7 5 4 9 9 C 1.53730 * 107.93968 * 180.54698 * 8 7 5 10 10 H 1.09001 * 112.55861 * 139.72465 * 9 8 7 11 11 C 1.53685 * 109.34406 * 266.25343 * 9 8 7 12 12 N 1.46640 * 108.01128 * 127.55739 * 11 9 8 13 13 C 1.36929 * 125.33154 * 180.81867 * 12 11 9 14 14 H 1.08004 * 120.00275 * 180.02562 * 13 12 11 15 15 C 1.38820 * 120.00158 * 0.02562 * 13 12 11 16 16 N 1.31622 * 119.99770 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00014 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47372 * 90.00237 * 17 15 13 19 19 H 1.48505 * 109.46623 * 210.00133 * 17 15 13 20 20 H 1.48499 * 109.47399 * 329.99583 * 17 15 13 21 21 C 1.46741 * 109.33861 * 0.83871 * 12 11 9 22 22 C 1.53929 * 106.72290 * 341.65801 * 21 12 11 23 23 H 1.09003 * 113.01398 * 150.83208 * 22 21 12 24 24 C 1.46773 * 125.34304 * 359.42619 * 7 5 4 25 25 C 1.46881 * 106.35694 * 359.54379 * 4 3 2 26 26 C 1.39187 * 135.56730 * 180.30377 * 25 4 3 27 27 C 1.36724 * 119.51282 * 180.02562 * 26 25 4 28 28 C 1.38902 * 120.51834 * 359.92371 * 27 26 25 29 29 C 1.36679 * 120.89759 * 0.06666 * 28 27 26 30 30 C 1.37047 * 124.37373 * 179.64571 * 2 1 3 31 31 H 1.09004 * 109.46572 * 270.34925 * 1 2 3 32 32 H 1.08994 * 109.47373 * 30.35217 * 1 2 3 33 33 H 1.09002 * 109.46765 * 150.35975 * 1 2 3 34 34 H 1.08994 * 109.77689 * 300.16996 * 8 7 5 35 35 H 1.09000 * 109.77098 * 60.92866 * 8 7 5 36 36 H 1.08998 * 109.76633 * 247.20653 * 11 9 8 37 37 H 1.09005 * 109.75804 * 7.91736 * 11 9 8 38 38 H 0.96995 * 120.00216 * 180.02562 * 16 15 13 39 39 H 1.09001 * 110.00904 * 222.34629 * 21 12 11 40 40 H 1.08998 * 110.01207 * 100.97085 * 21 12 11 41 41 H 1.09000 * 110.02469 * 280.77424 * 24 7 5 42 42 H 1.08998 * 110.02643 * 42.18555 * 24 7 5 43 43 H 1.07999 * 120.24769 * 359.96084 * 26 25 4 44 44 H 1.07998 * 119.73687 * 179.97438 * 27 26 25 45 45 H 1.08005 * 119.54902 * 180.02562 * 28 27 26 46 46 H 1.07998 * 120.10445 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1898 1.0597 0.0000 4 6 3.4748 0.7771 -0.0035 5 6 4.5910 1.7396 -0.0085 6 8 5.7393 1.3391 -0.0056 7 7 4.3390 3.0636 -0.0108 8 6 5.3559 4.1207 -0.0099 9 6 4.6301 5.4758 0.0007 10 1 5.1128 6.2036 0.6530 11 6 4.4665 5.9770 -1.4429 12 7 3.0519 6.3013 -1.6527 13 6 2.5106 6.7642 -2.8221 14 1 1.4533 6.9766 -2.8810 15 6 3.3208 6.9606 -3.9322 16 7 4.6092 6.7013 -3.8606 17 14 2.5824 7.5927 -5.5273 18 1 2.6290 9.0769 -5.5404 19 1 3.3595 7.0629 -6.6765 20 1 1.1719 7.1407 -5.6333 21 6 2.3073 6.0526 -0.4129 22 6 3.1840 5.1299 0.4528 23 1 3.0226 5.2685 1.5218 24 6 3.0042 3.6738 -0.0207 25 6 3.5760 -0.6882 0.0051 26 6 4.6166 -1.6126 0.0117 27 6 4.3300 -2.9494 0.0185 28 6 3.0121 -3.3882 0.0205 29 6 1.9757 -2.4972 0.0144 30 6 2.2387 -1.1311 0.0070 31 1 -0.3632 0.0063 1.0277 32 1 -0.3634 0.8867 -0.5193 33 1 -0.3633 -0.8932 -0.5083 34 1 5.9811 4.0302 0.8782 35 1 5.9726 4.0397 -0.9050 36 1 5.0755 6.8682 -1.5949 37 1 4.7734 5.1977 -2.1405 38 1 5.1754 6.8388 -4.6360 39 1 1.3601 5.5628 -0.6386 40 1 2.1267 6.9925 0.1087 41 1 2.5925 3.6546 -1.0297 42 1 2.3443 3.1391 0.6624 43 1 5.6429 -1.2764 0.0103 44 1 5.1346 -3.6698 0.0233 45 1 2.8036 -4.4479 0.0264 46 1 0.9558 -2.8526 0.0156 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049178941.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:45 Heat of formation + Delta-G solvation = 81.818125 kcal Electronic energy + Delta-G solvation = -29781.862248 eV Core-core repulsion = 25866.216466 eV Total energy + Delta-G solvation = -3915.645782 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.53801 -41.43441 -39.54249 -38.75252 -36.59743 -34.70779 -34.06646 -32.04280 -31.52277 -31.13022 -31.06412 -28.60950 -27.18220 -27.00165 -25.26144 -24.28419 -23.29587 -22.62437 -21.78333 -20.80391 -20.45341 -19.03812 -18.62461 -18.16251 -17.62498 -17.31154 -16.95290 -16.57200 -16.42843 -16.14076 -15.84469 -15.53010 -15.07325 -14.91102 -14.62685 -14.39824 -14.31050 -13.89293 -13.68351 -13.58357 -13.50973 -13.29847 -13.08328 -12.91624 -12.86052 -12.75966 -12.67630 -12.17028 -12.02372 -11.99354 -11.89282 -11.86978 -11.49579 -11.32947 -11.25747 -11.01017 -10.69261 -9.79987 -9.74860 -8.97770 -8.86838 -7.84603 -5.19549 -0.23737 0.35262 0.82056 1.36276 1.43993 1.46219 1.54485 1.89089 2.13877 2.49190 2.79880 3.06653 3.33378 3.35724 3.40474 3.56080 3.68577 3.84496 3.94562 4.06245 4.11471 4.27565 4.28954 4.34796 4.38498 4.42029 4.46365 4.51194 4.60949 4.65593 4.73756 4.75360 4.82540 4.92694 5.00087 5.04663 5.08709 5.18135 5.26272 5.38723 5.46053 5.47984 5.56445 5.63837 5.72129 5.77342 5.98125 6.21552 6.35358 6.68521 6.99613 7.11324 7.80800 8.42529 9.25512 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014151 B = 0.003119 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.149933 B = 8976.506508 C = 9420.067427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.310 5.310 3 N -0.206 5.206 4 C -0.037 4.037 5 C 0.609 3.391 6 O -0.571 6.571 7 N -0.598 5.598 8 C 0.124 3.876 9 C -0.110 4.110 10 H 0.122 0.878 11 C 0.198 3.802 12 N -0.623 5.623 13 C -0.237 4.237 14 H 0.086 0.914 15 C -0.069 4.069 16 N -0.952 5.952 17 Si 0.977 3.023 18 H -0.284 1.284 19 H -0.300 1.300 20 H -0.267 1.267 21 C 0.142 3.858 22 C -0.095 4.095 23 H 0.135 0.865 24 C 0.129 3.871 25 C -0.138 4.138 26 C -0.078 4.078 27 C -0.130 4.130 28 C -0.081 4.081 29 C -0.109 4.109 30 C 0.050 3.950 31 H 0.104 0.896 32 H 0.098 0.902 33 H 0.123 0.877 34 H 0.085 0.915 35 H 0.046 0.954 36 H 0.008 0.992 37 H 0.005 0.995 38 H 0.244 0.756 39 H 0.045 0.955 40 H 0.035 0.965 41 H 0.043 0.957 42 H 0.098 0.902 43 H 0.117 0.883 44 H 0.155 0.845 45 H 0.173 0.827 46 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.790 -20.081 13.447 26.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.104 5.104 3 N -0.038 5.038 4 C -0.204 4.204 5 C 0.398 3.602 6 O -0.450 6.450 7 N -0.330 5.330 8 C 0.002 3.998 9 C -0.130 4.130 10 H 0.140 0.860 11 C 0.073 3.927 12 N -0.349 5.349 13 C -0.366 4.366 14 H 0.104 0.896 15 C -0.262 4.262 16 N -0.601 5.601 17 Si 0.805 3.195 18 H -0.211 1.211 19 H -0.227 1.227 20 H -0.192 1.192 21 C 0.016 3.984 22 C -0.115 4.115 23 H 0.153 0.847 24 C 0.007 3.993 25 C -0.145 4.145 26 C -0.099 4.099 27 C -0.148 4.148 28 C -0.102 4.102 29 C -0.130 4.130 30 C -0.062 4.062 31 H 0.122 0.878 32 H 0.117 0.883 33 H 0.141 0.859 34 H 0.104 0.896 35 H 0.064 0.936 36 H 0.027 0.973 37 H 0.023 0.977 38 H 0.053 0.947 39 H 0.063 0.937 40 H 0.053 0.947 41 H 0.061 0.939 42 H 0.116 0.884 43 H 0.135 0.865 44 H 0.173 0.827 45 H 0.190 0.810 46 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -10.058 -19.398 13.245 25.552 hybrid contribution 0.798 0.369 -1.509 1.747 sum -9.260 -19.029 11.736 24.199 Atomic orbital electron populations 1.22584 0.70097 1.07032 1.06124 1.45750 1.08723 1.00328 1.55576 1.72961 1.03568 1.14696 1.12594 1.22417 0.90330 0.92787 1.14883 1.16617 0.86686 0.80364 0.76570 1.90721 1.21987 1.78756 1.53506 1.48143 1.09675 1.04393 1.70744 1.21798 0.90664 0.85753 1.01580 1.23032 0.96285 0.95542 0.98131 0.86026 1.20764 0.85280 0.96213 0.90481 1.44502 1.04585 1.77118 1.08733 1.19448 0.93477 1.35467 0.88228 0.89628 1.25659 0.96197 1.02804 1.01523 1.70208 1.04639 1.55675 1.29588 0.85100 0.77638 0.77811 0.78939 1.21097 1.22662 1.19179 1.21362 0.94446 0.96235 0.86324 1.23046 0.94442 0.92906 1.01072 0.84707 1.22087 0.83269 0.93045 1.00927 1.19721 0.95125 0.91156 1.08529 1.20462 0.97891 0.93153 0.98372 1.21219 0.98715 0.94217 1.00698 1.21237 0.91079 1.01384 0.96468 1.20273 1.02371 0.86670 1.03689 1.19549 0.89472 0.91404 1.05744 0.87790 0.88307 0.85902 0.89645 0.93603 0.97346 0.97671 0.94679 0.93724 0.94693 0.93867 0.88442 0.86472 0.82738 0.80966 0.81625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.91 11.24 127.77 1.44 2.34 16 2 N -0.31 -7.22 3.74 -361.13 -1.35 -8.57 16 3 N -0.21 -6.36 9.04 -44.88 -0.41 -6.76 16 4 C -0.04 -1.31 7.15 43.86 0.31 -1.00 16 5 C 0.61 24.60 7.83 86.65 0.68 25.28 16 6 O -0.57 -25.51 16.71 -4.07 -0.07 -25.58 16 7 N -0.60 -22.91 3.31 -820.90 -2.72 -25.63 16 8 C 0.12 4.67 6.23 86.59 0.54 5.21 16 9 C -0.11 -4.06 4.02 -9.49 -0.04 -4.10 16 10 H 0.12 3.79 8.14 -2.39 -0.02 3.77 16 11 C 0.20 9.96 4.75 86.58 0.41 10.37 16 12 N -0.62 -31.86 3.37 -697.89 -2.35 -34.21 16 13 C -0.24 -13.33 10.25 84.04 0.86 -12.47 16 14 H 0.09 4.54 7.83 -2.91 -0.02 4.52 16 15 C -0.07 -4.01 5.48 84.86 0.47 -3.55 16 16 N -0.95 -59.08 10.25 21.65 0.22 -58.86 16 17 Si 0.98 46.74 29.55 68.60 2.03 48.77 16 18 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 19 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 20 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 21 C 0.14 5.48 6.37 86.65 0.55 6.03 16 22 C -0.10 -3.07 4.19 -9.26 -0.04 -3.11 16 23 H 0.14 3.26 8.14 -2.39 -0.02 3.24 16 24 C 0.13 4.51 5.22 86.72 0.45 4.96 16 25 C -0.14 -4.29 6.34 -20.14 -0.13 -4.41 16 26 C -0.08 -2.14 9.87 22.14 0.22 -1.93 16 27 C -0.13 -2.34 9.98 22.07 0.22 -2.12 16 28 C -0.08 -1.07 9.96 22.06 0.22 -0.85 16 29 C -0.11 -1.62 9.94 22.12 0.22 -1.40 16 30 C 0.05 1.18 6.85 39.19 0.27 1.45 16 31 H 0.10 0.75 8.14 -2.38 -0.02 0.73 16 32 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.12 0.63 8.09 -2.39 -0.02 0.61 16 34 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 35 H 0.05 1.98 7.44 -2.39 -0.02 1.96 16 36 H 0.01 0.47 7.46 -2.39 -0.02 0.45 16 37 H 0.01 0.30 6.51 -2.38 -0.02 0.29 16 38 H 0.24 14.86 8.31 -92.71 -0.77 14.09 16 39 H 0.04 1.67 7.94 -2.39 -0.02 1.65 16 40 H 0.04 1.28 8.14 -2.39 -0.02 1.27 16 41 H 0.04 1.81 7.72 -2.39 -0.02 1.80 16 42 H 0.10 2.99 6.48 -2.39 -0.02 2.98 16 43 H 0.12 3.53 7.65 -2.91 -0.02 3.51 16 44 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 45 H 0.17 0.83 8.06 -2.91 -0.02 0.81 16 46 H 0.17 1.09 8.06 -2.91 -0.02 1.06 16 Total: -1.00 -82.41 371.40 3.00 -79.41 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: 0.99 Total: 10.72 kcal Atomic # 6 Polarization: 14.06 SS G_CDS: 6.65 Total: 20.71 kcal Atomic # 7 Polarization: -127.42 SS G_CDS: -6.60 Total: -134.03 kcal Atomic # 8 Polarization: -25.51 SS G_CDS: -0.07 Total: -25.58 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.77 kcal Total: -82.41 3.00 -79.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049178941.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.228 kcal (2) G-P(sol) polarization free energy of solvation -82.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds