Wall clock time and date at job start Sat Apr 11 2020 06:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35033 * 124.88731 * 2 1 4 4 C 1.35365 * 107.22812 * 179.72349 * 3 2 1 5 5 C 1.41504 * 105.50394 * 0.41899 * 4 3 2 6 6 C 1.47709 * 126.51796 * 179.83612 * 5 4 3 7 7 O 1.21574 * 119.99943 * 359.71730 * 6 5 4 8 8 N 1.34773 * 119.99942 * 179.71238 * 6 5 4 9 9 C 1.46502 * 119.99889 * 180.02562 * 8 6 5 10 10 C 1.50699 * 109.47038 * 179.97438 * 9 8 6 11 11 C 1.37950 * 119.71693 * 260.00379 * 10 9 8 12 12 C 1.38218 * 119.83449 * 180.02562 * 11 10 9 13 13 C 1.38007 * 119.71330 * 0.26411 * 12 11 10 14 14 C 1.38786 * 120.50483 * 359.93348 * 13 12 11 15 15 C 1.37715 * 119.84799 * 359.57238 * 14 13 12 16 16 C 1.50599 * 122.85363 * 181.44989 * 15 14 13 17 17 C 1.53268 * 110.82839 * 339.69964 * 16 15 14 18 18 N 1.47223 * 107.66735 * 47.63855 * 17 16 15 19 19 C 1.36943 * 121.33371 * 115.81271 * 18 17 16 20 20 H 1.07997 * 119.99688 * 334.48691 * 19 18 17 21 21 C 1.38808 * 119.99859 * 154.77156 * 19 18 17 22 22 N 1.31618 * 120.00109 * 346.57870 * 21 19 18 23 23 Si 1.86806 * 119.99851 * 166.58844 * 21 19 18 24 24 H 1.48499 * 109.46765 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.46947 * 119.99542 * 23 21 19 26 26 H 1.48497 * 109.46887 * 239.99832 * 23 21 19 27 27 C 1.46685 * 117.33504 * 295.53814 * 18 17 16 28 28 N 1.28469 * 124.88274 * 180.02562 * 2 1 3 29 29 H 1.09006 * 109.46782 * 269.97017 * 1 2 3 30 30 H 1.08998 * 109.47016 * 29.97046 * 1 2 3 31 31 H 1.09003 * 109.47196 * 149.97163 * 1 2 3 32 32 H 1.07999 * 126.38289 * 0.02562 * 3 2 1 33 33 H 1.08002 * 127.25002 * 180.25900 * 4 3 2 34 34 H 0.97003 * 119.99928 * 0.02562 * 8 6 5 35 35 H 1.09003 * 109.47009 * 60.00397 * 9 8 6 36 36 H 1.08992 * 109.47293 * 300.00357 * 9 8 6 37 37 H 1.08003 * 120.07895 * 0.05441 * 11 10 9 38 38 H 1.07998 * 120.14587 * 180.23984 * 12 11 10 39 39 H 1.08004 * 119.74305 * 179.90547 * 13 12 11 40 40 H 1.08999 * 109.20409 * 100.16381 * 16 15 14 41 41 H 1.09004 * 109.20442 * 219.50613 * 16 15 14 42 42 H 1.09005 * 109.88373 * 288.11970 * 17 16 15 43 43 H 1.09002 * 109.91035 * 167.17040 * 17 16 15 44 44 H 0.97000 * 119.99737 * 179.97438 * 22 21 19 45 45 H 1.08995 * 109.43976 * 164.73486 * 27 18 17 46 46 H 1.08999 * 109.43765 * 284.61540 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2374 1.1076 0.0000 4 6 3.5272 0.6970 0.0062 5 6 3.4740 -0.7170 0.0000 6 6 4.6273 -1.6400 -0.0002 7 8 5.7597 -1.1978 0.0003 8 7 4.4240 -2.9723 -0.0008 9 6 5.5678 -3.8877 -0.0003 10 6 5.0722 -5.3109 -0.0005 11 6 5.0433 -6.0251 1.1794 12 6 4.5897 -7.3307 1.1820 13 6 4.1737 -7.9126 0.0018 14 6 4.2062 -7.1965 -1.1866 15 6 4.6483 -5.8922 -1.1890 16 6 4.6819 -5.0432 -2.4324 17 6 4.6619 -5.9184 -3.6905 18 7 3.5929 -6.9167 -3.5235 19 6 2.4999 -6.9345 -4.3483 20 1 2.1830 -6.0291 -4.8444 21 6 1.7958 -8.1150 -4.5421 22 7 2.3151 -9.2617 -4.1576 23 14 0.1114 -8.0761 -5.3489 24 1 -0.2439 -6.6741 -5.6854 25 1 0.1378 -8.8920 -6.5894 26 1 -0.8987 -8.6313 -4.4126 27 6 3.7484 -7.8955 -2.4421 28 7 2.1997 -1.0539 -0.0005 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3633 0.8902 -0.5134 31 1 -0.3634 -0.8897 -0.5143 32 1 1.8906 2.1304 0.0004 33 1 4.4109 1.3179 0.0119 34 1 3.5204 -3.3251 -0.0014 35 1 6.1720 -3.7139 0.8901 36 1 6.1732 -3.7133 -0.8898 37 1 5.3739 -5.5649 2.0989 38 1 4.5613 -7.8932 2.1035 39 1 3.8206 -8.9333 0.0030 40 1 3.8147 -4.3828 -2.4392 41 1 5.5907 -4.4414 -2.4313 42 1 5.6217 -6.4218 -3.8072 43 1 4.4584 -5.3035 -4.5673 44 1 1.8229 -10.0865 -4.2927 45 1 2.7928 -8.3857 -2.2564 46 1 4.4880 -8.6419 -2.7319 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051306574.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:05 Heat of formation + Delta-G solvation = 95.454699 kcal Electronic energy + Delta-G solvation = -29073.125622 eV Core-core repulsion = 25158.071166 eV Total energy + Delta-G solvation = -3915.054456 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.78161 -39.86587 -38.89695 -35.94831 -34.86257 -33.67931 -32.69204 -31.69314 -30.83756 -30.09752 -28.87798 -27.79699 -25.77685 -25.53288 -23.15626 -22.86247 -22.08225 -21.65179 -20.42509 -19.98060 -18.98093 -18.01976 -16.76797 -16.65839 -16.47640 -15.97536 -15.59731 -15.31896 -14.83260 -14.47821 -14.34768 -14.19621 -13.95107 -13.57253 -13.39111 -13.16799 -13.09783 -12.88992 -12.83593 -12.57231 -12.50933 -12.25922 -11.89901 -11.48832 -11.22662 -11.06873 -10.93487 -10.83332 -10.72727 -10.34011 -10.18321 -10.09381 -9.88766 -9.70331 -9.46269 -9.26116 -8.91335 -8.69163 -8.22684 -7.83714 -6.76345 -5.83291 -3.24231 1.49153 1.65990 1.92280 1.97743 2.26007 3.34264 3.35132 3.42132 3.44210 3.44793 4.13592 4.28123 4.45505 4.56301 4.70644 4.73992 4.93485 5.03054 5.16625 5.19683 5.30067 5.35890 5.45362 5.48619 5.56498 5.57702 5.59775 5.80007 5.88457 6.03587 6.16276 6.18778 6.21252 6.26615 6.46167 6.52484 6.53939 6.59447 6.69591 6.87762 6.89516 6.99441 7.15610 7.24757 7.48765 7.50336 7.64794 7.75565 7.80164 8.26048 8.35700 9.16198 9.78020 10.36388 11.26908 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009429 B = 0.003493 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2968.949396 B = 8014.257932 C = 9804.839346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.285 5.285 3 C -0.022 4.022 4 C -0.180 4.180 5 C -0.016 4.016 6 C 0.604 3.396 7 O -0.539 6.539 8 N -0.706 5.706 9 C 0.165 3.835 10 C -0.124 4.124 11 C -0.117 4.117 12 C -0.132 4.132 13 C -0.113 4.113 14 C -0.077 4.077 15 C -0.045 4.045 16 C -0.100 4.100 17 C 0.142 3.858 18 N -0.594 5.594 19 C -0.245 4.245 20 H 0.069 0.931 21 C 0.000 4.000 22 N -0.910 5.910 23 Si 0.905 3.095 24 H -0.278 1.278 25 H -0.290 1.290 26 H -0.289 1.289 27 C 0.205 3.795 28 N -0.257 5.257 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.182 0.818 33 H 0.162 0.838 34 H 0.409 0.591 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.119 0.881 40 H 0.070 0.930 41 H 0.062 0.938 42 H 0.027 0.973 43 H 0.060 0.940 44 H 0.254 0.746 45 H 0.099 0.901 46 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.062 16.353 11.738 20.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.073 5.073 3 C -0.165 4.165 4 C -0.208 4.208 5 C -0.176 4.176 6 C 0.388 3.612 7 O -0.415 6.415 8 N -0.357 5.357 9 C 0.043 3.957 10 C -0.125 4.125 11 C -0.136 4.136 12 C -0.150 4.150 13 C -0.132 4.132 14 C -0.079 4.079 15 C -0.045 4.045 16 C -0.139 4.139 17 C 0.015 3.985 18 N -0.316 5.316 19 C -0.375 4.375 20 H 0.087 0.913 21 C -0.198 4.198 22 N -0.555 5.555 23 Si 0.735 3.265 24 H -0.203 1.203 25 H -0.216 1.216 26 H -0.216 1.216 27 C 0.079 3.921 28 N -0.094 5.094 29 H 0.103 0.897 30 H 0.114 0.886 31 H 0.118 0.882 32 H 0.199 0.801 33 H 0.180 0.820 34 H 0.245 0.755 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.132 0.868 38 H 0.133 0.867 39 H 0.137 0.863 40 H 0.089 0.911 41 H 0.081 0.919 42 H 0.045 0.955 43 H 0.078 0.922 44 H 0.064 0.936 45 H 0.117 0.883 46 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -1.181 15.582 11.673 19.505 hybrid contribution -0.964 0.425 -0.269 1.087 sum -2.145 16.007 11.405 19.771 Atomic orbital electron populations 1.22206 0.73106 1.05707 1.04474 1.45432 1.07891 1.03118 1.50885 1.22861 0.91011 0.93744 1.08845 1.21781 0.97307 0.93526 1.08148 1.21968 0.90735 0.94221 1.10711 1.16879 0.86535 0.81439 0.76349 1.90780 1.22537 1.77225 1.50937 1.45954 1.10984 1.04966 1.73839 1.20204 0.87845 0.84955 1.02687 1.19785 1.03924 0.94932 0.93830 1.20754 1.01303 0.94848 0.96686 1.20925 1.01005 0.95292 0.97809 1.21187 0.99829 0.99995 0.92197 1.21041 0.95630 0.93613 0.97611 1.19449 0.97014 0.94019 0.94061 1.21120 1.00837 0.97603 0.94302 1.21013 0.91773 0.91373 0.94305 1.44012 1.20345 1.34127 1.33083 1.19226 1.02738 0.93763 1.21729 0.91303 1.25025 0.99694 0.95071 0.99973 1.69986 1.36973 0.97012 1.51513 0.86170 0.84117 0.77501 0.78698 1.20325 1.21646 1.21576 1.19795 1.00952 0.89621 0.81704 1.73580 1.03022 1.14077 1.18684 0.89681 0.88590 0.88237 0.80114 0.82031 0.75514 0.91014 0.90235 0.86841 0.86700 0.86290 0.91139 0.91939 0.95499 0.92151 0.93578 0.88321 0.94226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.44 11.31 59.85 0.68 1.12 16 2 N -0.28 -2.78 3.70 -68.12 -0.25 -3.03 16 3 C -0.02 -0.19 11.46 -17.17 -0.20 -0.39 16 4 C -0.18 -2.05 10.81 -39.36 -0.43 -2.47 16 5 C -0.02 -0.23 7.13 -82.77 -0.59 -0.82 16 6 C 0.60 9.35 7.82 -12.39 -0.10 9.26 16 7 O -0.54 -9.57 16.93 5.30 0.09 -9.48 16 8 N -0.71 -10.29 5.52 -62.47 -0.34 -10.64 16 9 C 0.17 2.39 5.10 -5.19 -0.03 2.37 16 10 C -0.12 -1.96 5.25 -104.47 -0.55 -2.51 16 11 C -0.12 -1.72 9.65 -39.69 -0.38 -2.10 16 12 C -0.13 -1.98 10.05 -39.67 -0.40 -2.38 16 13 C -0.11 -1.98 9.62 -39.46 -0.38 -2.36 16 14 C -0.08 -1.56 5.82 -104.56 -0.61 -2.16 16 15 C -0.04 -0.82 5.76 -104.60 -0.60 -1.43 16 16 C -0.10 -1.83 5.25 -27.79 -0.15 -1.98 16 17 C 0.14 3.00 6.55 -3.51 -0.02 2.98 16 18 N -0.59 -14.86 2.97 -173.65 -0.52 -15.38 16 19 C -0.25 -6.67 9.71 -15.06 -0.15 -6.82 16 20 H 0.07 1.84 7.86 -52.49 -0.41 1.43 16 21 C 0.00 0.01 5.05 -17.43 -0.09 -0.08 16 22 N -0.91 -25.86 10.98 55.49 0.61 -25.25 16 23 Si 0.91 21.49 29.57 -169.99 -5.03 16.46 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 27 C 0.20 4.90 4.84 -5.04 -0.02 4.87 16 28 N -0.26 -3.38 11.67 33.42 0.39 -2.99 16 29 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.10 0.22 8.13 -51.93 -0.42 -0.20 16 31 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.18 0.78 8.06 -52.49 -0.42 0.35 16 33 H 0.16 1.64 8.06 -52.49 -0.42 1.22 16 34 H 0.41 5.98 8.19 -40.82 -0.33 5.65 16 35 H 0.07 0.98 7.99 -51.93 -0.41 0.56 16 36 H 0.08 1.19 6.34 -51.93 -0.33 0.86 16 37 H 0.11 1.40 8.02 -52.48 -0.42 0.98 16 38 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 39 H 0.12 1.96 8.05 -52.48 -0.42 1.54 16 40 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 41 H 0.06 1.03 6.27 -51.93 -0.33 0.70 16 42 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.06 1.24 7.96 -51.93 -0.41 0.83 16 44 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 45 H 0.10 2.61 6.29 -51.93 -0.33 2.28 16 46 H 0.04 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 382.13 15.07 5.76 5.76 Total: -1.00 -33.37 382.13 -9.64 -43.01 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -6.34 Total: 6.43 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: -4.01 Total: -4.90 kcal Atomic # 7 Polarization: -57.17 SS G_CDS: -0.11 Total: -57.28 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.09 Total: -9.48 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.46 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.37 -9.64 -43.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051306574.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.467 kcal (2) G-P(sol) polarization free energy of solvation -33.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds