Wall clock time and date at job start Sat Apr 11 2020 06:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.28442 * 125.18762 * 2 1 4 4 C 1.30867 * 110.92758 * 179.97438 * 3 2 1 5 5 C 1.39677 * 107.85600 * 359.77911 * 4 3 2 6 6 C 1.36594 * 125.19163 * 179.97438 * 2 1 3 7 7 C 1.47164 * 126.88294 * 359.97438 * 6 2 1 8 8 O 1.21630 * 120.00305 * 5.24325 * 7 6 2 9 9 N 1.34776 * 119.99935 * 185.24472 * 7 6 2 10 10 C 1.46505 * 119.99931 * 175.23012 * 9 7 6 11 11 C 1.52999 * 109.47009 * 180.02562 * 10 9 7 12 12 H 1.08996 * 109.77050 * 295.74859 * 11 10 9 13 13 C 1.52791 * 109.77711 * 174.99899 * 11 10 9 14 14 C 1.50605 * 110.86198 * 192.94509 * 13 11 10 15 15 C 1.38975 * 117.60800 * 199.59255 * 14 13 11 16 16 C 1.37908 * 120.58487 * 180.46594 * 15 14 13 17 17 C 1.38270 * 119.82371 * 0.03092 * 16 15 14 18 18 C 1.37956 * 119.71573 * 359.76907 * 17 16 15 19 19 C 1.37667 * 122.86965 * 19.69302 * 14 13 11 20 20 C 1.50810 * 122.36334 * 359.23812 * 19 14 13 21 21 N 1.46688 * 109.66628 * 11.09458 * 20 19 14 22 22 C 1.36933 * 121.34872 * 135.68419 * 21 20 19 23 23 H 1.08007 * 120.00006 * 209.34484 * 22 21 20 24 24 C 1.38810 * 120.00268 * 29.35361 * 22 21 20 25 25 N 1.31629 * 119.99634 * 9.83388 * 24 22 21 26 26 Si 1.86803 * 120.00233 * 189.83768 * 24 22 21 27 27 H 1.48495 * 109.46836 * 89.99773 * 26 24 22 28 28 H 1.48498 * 109.47100 * 209.99640 * 26 24 22 29 29 H 1.48499 * 109.46724 * 329.99765 * 26 24 22 30 30 H 1.09002 * 109.47209 * 273.17246 * 1 2 3 31 31 H 1.09007 * 109.47421 * 33.17423 * 1 2 3 32 32 H 1.08997 * 109.47328 * 153.17416 * 1 2 3 33 33 H 1.07992 * 126.07037 * 179.97438 * 4 3 2 34 34 H 1.08009 * 127.31830 * 180.26937 * 5 4 3 35 35 H 0.97000 * 120.00298 * 355.23078 * 9 7 6 36 36 H 1.08993 * 109.47031 * 59.99977 * 10 9 7 37 37 H 1.08998 * 109.47209 * 299.99989 * 10 9 7 38 38 H 1.09000 * 109.19507 * 313.29744 * 13 11 10 39 39 H 1.09002 * 109.19562 * 72.58545 * 13 11 10 40 40 H 1.07995 * 119.71202 * 0.48063 * 15 14 13 41 41 H 1.08000 * 120.08869 * 180.02562 * 16 15 14 42 42 H 1.07995 * 120.14274 * 179.79112 * 17 16 15 43 43 H 1.08004 * 119.74662 * 180.02562 * 18 17 16 44 44 H 1.08992 * 109.44039 * 251.03350 * 20 19 14 45 45 H 1.09000 * 109.43719 * 131.14960 * 20 19 14 46 46 H 0.97001 * 119.99645 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2052 1.0497 0.0000 4 6 3.4735 0.7274 0.0005 5 6 3.5611 -0.6666 0.0061 6 6 2.2522 -1.1163 0.0005 7 6 1.7993 -2.5165 0.0017 8 8 0.6141 -2.7724 -0.0940 9 7 2.6978 -3.5153 0.1087 10 6 2.2410 -4.9032 0.2151 11 6 3.4521 -5.8317 0.3246 12 1 4.0393 -5.7815 -0.5923 13 6 2.9837 -7.2668 0.5606 14 6 4.1331 -8.1436 0.9830 15 6 3.9832 -9.5173 0.8357 16 6 4.9932 -10.3777 1.2118 17 6 6.1661 -9.8717 1.7410 18 6 6.3193 -8.5082 1.8845 19 6 5.3047 -7.6408 1.5023 20 6 5.5414 -6.1616 1.6764 21 7 4.2847 -5.4332 1.4718 22 6 3.9016 -4.4232 2.3133 23 1 2.8525 -4.2206 2.4714 24 6 4.8615 -3.6595 2.9631 25 7 6.1295 -3.7723 2.6284 26 14 4.3537 -2.4717 4.3126 27 1 4.3805 -3.1704 5.6227 28 1 5.2970 -1.3252 4.3436 29 1 2.9801 -1.9756 4.0442 30 1 -0.3634 0.0569 1.0261 31 1 -0.3634 0.8602 -0.5623 32 1 -0.3634 -0.9170 -0.4637 33 1 4.3048 1.4167 0.0003 34 1 4.4595 -1.2663 0.0120 35 1 3.6469 -3.3153 0.1153 36 1 1.6617 -5.1640 -0.6705 37 1 1.6177 -5.0136 1.1024 38 1 2.2232 -7.2718 1.3415 39 1 2.5530 -7.6593 -0.3606 40 1 3.0678 -9.9147 0.4229 41 1 4.8683 -11.4439 1.0934 42 1 6.9591 -10.5410 2.0403 43 1 7.2354 -8.1124 2.2974 44 1 6.2789 -5.8241 0.9484 45 1 5.9121 -5.9696 2.6833 46 1 6.8003 -3.2389 3.0827 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054036004.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:16 Heat of formation + Delta-G solvation = 81.184900 kcal Electronic energy + Delta-G solvation = -29987.299603 eV Core-core repulsion = 26071.626362 eV Total energy + Delta-G solvation = -3915.673241 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.48104 -40.89219 -40.17977 -38.06583 -35.51588 -34.60752 -34.10224 -32.97024 -32.30480 -31.41768 -30.32787 -28.05316 -27.34078 -26.95952 -24.53689 -24.02316 -22.86719 -22.73760 -22.05149 -21.03571 -20.53679 -19.17675 -17.96539 -17.69194 -17.32603 -17.16562 -16.73229 -16.40118 -16.06145 -15.99586 -15.76817 -15.31417 -15.26869 -14.95379 -14.69493 -14.56549 -14.39791 -14.00895 -13.78287 -13.72643 -13.60254 -13.25159 -13.22874 -13.10852 -12.79215 -12.61266 -12.53307 -12.27164 -12.14097 -11.89281 -11.86323 -11.57865 -11.32184 -11.04413 -10.64756 -10.31644 -10.02249 -9.82532 -9.50776 -9.23264 -8.62560 -7.85812 -5.30365 0.24122 0.61732 0.65757 1.39009 1.43036 1.45897 1.48550 1.62585 2.18843 2.39691 2.48200 3.01341 3.33316 3.50979 3.61223 3.69145 3.85113 4.13737 4.17983 4.25472 4.27358 4.28682 4.37172 4.42189 4.43676 4.51709 4.60060 4.65272 4.72237 4.75633 4.84514 4.86897 4.94687 4.95197 5.23759 5.25840 5.30182 5.43018 5.50105 5.55129 5.56066 5.71652 5.73431 5.73766 5.77662 6.04703 6.30734 6.38153 6.56306 7.01282 7.16019 7.17720 7.82114 8.38883 9.21133 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014456 B = 0.003752 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.421879 B = 7461.694359 C = 8669.205627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.269 5.269 3 N -0.295 5.295 4 C -0.007 4.007 5 C -0.185 4.185 6 C -0.053 4.053 7 C 0.585 3.415 8 O -0.581 6.581 9 N -0.675 5.675 10 C 0.143 3.857 11 C 0.159 3.841 12 H 0.046 0.954 13 C -0.084 4.084 14 C -0.083 4.083 15 C -0.127 4.127 16 C -0.132 4.132 17 C -0.128 4.128 18 C -0.138 4.138 19 C -0.108 4.108 20 C 0.224 3.776 21 N -0.598 5.598 22 C -0.230 4.230 23 H 0.060 0.940 24 C -0.020 4.020 25 N -0.920 5.920 26 Si 0.934 3.066 27 H -0.295 1.295 28 H -0.291 1.291 29 H -0.288 1.288 30 H 0.086 0.914 31 H 0.115 0.885 32 H 0.107 0.893 33 H 0.216 0.784 34 H 0.165 0.835 35 H 0.415 0.585 36 H 0.085 0.915 37 H 0.054 0.946 38 H 0.069 0.931 39 H 0.097 0.903 40 H 0.140 0.860 41 H 0.147 0.853 42 H 0.141 0.859 43 H 0.114 0.886 44 H 0.017 0.983 45 H 0.059 0.941 46 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.376 -4.216 -6.956 9.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.057 5.057 3 N -0.128 5.128 4 C -0.182 4.182 5 C -0.214 4.214 6 C -0.181 4.181 7 C 0.370 3.630 8 O -0.464 6.464 9 N -0.323 5.323 10 C 0.019 3.981 11 C 0.053 3.947 12 H 0.064 0.936 13 C -0.123 4.123 14 C -0.083 4.083 15 C -0.145 4.145 16 C -0.150 4.150 17 C -0.146 4.146 18 C -0.156 4.156 19 C -0.109 4.109 20 C 0.098 3.902 21 N -0.322 5.322 22 C -0.360 4.360 23 H 0.077 0.923 24 C -0.217 4.217 25 N -0.566 5.566 26 Si 0.765 3.235 27 H -0.223 1.223 28 H -0.217 1.217 29 H -0.214 1.214 30 H 0.105 0.895 31 H 0.134 0.866 32 H 0.125 0.875 33 H 0.232 0.768 34 H 0.183 0.817 35 H 0.252 0.748 36 H 0.103 0.897 37 H 0.072 0.928 38 H 0.088 0.912 39 H 0.115 0.885 40 H 0.158 0.842 41 H 0.165 0.835 42 H 0.159 0.841 43 H 0.132 0.868 44 H 0.035 0.965 45 H 0.077 0.923 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -5.971 -3.391 -6.937 9.761 hybrid contribution 1.215 0.370 1.337 1.844 sum -4.756 -3.021 -5.600 7.944 Atomic orbital electron populations 1.22530 0.71415 1.06814 1.05215 1.45848 1.08703 1.01426 1.49743 1.73124 1.04933 1.13909 1.20873 1.24068 0.93849 0.95143 1.05182 1.22544 0.95874 0.96293 1.06682 1.21514 0.92226 0.89851 1.14536 1.16981 0.85474 0.83615 0.76891 1.90669 1.16927 1.84972 1.53806 1.45617 1.10501 1.06016 1.70198 1.21332 0.96063 0.79344 1.01337 1.20861 0.90953 0.92461 0.90464 0.93647 1.20825 0.95476 0.94135 1.01877 1.19655 0.94821 0.94608 0.99221 1.21435 1.00110 0.92119 1.00869 1.21321 0.93536 1.00608 0.99545 1.21297 0.98820 0.94515 0.99987 1.21233 0.98792 0.94243 1.01373 1.20787 0.94519 0.97666 0.97921 1.19335 0.87470 0.84016 0.99350 1.44128 1.21726 1.38107 1.28223 1.19004 0.91316 1.06621 1.19063 0.92252 1.25324 0.95862 0.98988 1.01508 1.70042 1.00138 1.43346 1.43079 0.85800 0.76952 0.79721 0.81043 1.22255 1.21724 1.21438 0.89545 0.86644 0.87459 0.76752 0.81711 0.74773 0.89664 0.92757 0.91212 0.88466 0.84181 0.83537 0.84128 0.86769 0.96504 0.92325 0.93999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.00 10.97 127.77 1.40 3.40 16 2 N -0.27 -8.78 3.75 -356.02 -1.33 -10.11 16 3 N -0.30 -9.46 11.90 -57.14 -0.68 -10.14 16 4 C -0.01 -0.22 12.03 85.18 1.02 0.81 16 5 C -0.18 -6.16 10.50 22.66 0.24 -5.92 16 6 C -0.05 -1.89 6.96 40.79 0.28 -1.60 16 7 C 0.58 21.88 7.79 86.59 0.67 22.55 16 8 O -0.58 -22.84 14.62 -4.12 -0.06 -22.90 16 9 N -0.67 -24.67 4.10 -466.63 -1.91 -26.58 16 10 C 0.14 4.86 4.44 86.38 0.38 5.24 16 11 C 0.16 5.58 2.99 44.78 0.13 5.71 16 12 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 13 C -0.08 -2.55 5.21 29.75 0.16 -2.39 16 14 C -0.08 -2.72 5.76 -19.85 -0.11 -2.83 16 15 C -0.13 -3.39 9.59 22.37 0.21 -3.17 16 16 C -0.13 -3.22 10.04 22.20 0.22 -2.99 16 17 C -0.13 -3.43 10.05 22.21 0.22 -3.20 16 18 C -0.14 -4.59 9.62 22.35 0.22 -4.37 16 19 C -0.11 -4.05 5.82 -19.82 -0.12 -4.16 16 20 C 0.22 9.97 4.79 85.63 0.41 10.38 16 21 N -0.60 -26.02 2.86 -680.30 -1.94 -27.96 16 22 C -0.23 -11.08 7.03 84.03 0.59 -10.49 16 23 H 0.06 2.98 6.26 -2.91 -0.02 2.96 16 24 C -0.02 -1.00 5.10 84.86 0.43 -0.57 16 25 N -0.92 -48.40 11.10 21.65 0.24 -48.16 16 26 Si 0.93 43.79 29.57 68.60 2.03 45.82 16 27 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 28 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 29 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 30 H 0.09 2.03 8.14 -2.39 -0.02 2.02 16 31 H 0.12 2.20 8.14 -2.38 -0.02 2.18 16 32 H 0.11 2.87 6.04 -2.39 -0.01 2.85 16 33 H 0.22 4.72 8.06 -2.91 -0.02 4.69 16 34 H 0.17 5.39 7.58 -2.91 -0.02 5.36 16 35 H 0.41 16.02 6.51 -92.71 -0.60 15.42 16 36 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 37 H 0.05 2.03 7.25 -2.39 -0.02 2.01 16 38 H 0.07 2.18 8.03 -2.39 -0.02 2.16 16 39 H 0.10 2.30 8.11 -2.39 -0.02 2.28 16 40 H 0.14 2.89 8.05 -2.91 -0.02 2.86 16 41 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 42 H 0.14 2.90 8.06 -2.91 -0.02 2.88 16 43 H 0.11 3.72 8.05 -2.91 -0.02 3.70 16 44 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.06 3.00 6.53 -2.39 -0.02 2.98 16 46 H 0.25 13.09 8.31 -92.71 -0.77 12.32 16 Total: -1.00 -62.11 373.52 3.12 -58.99 By element: Atomic # 1 Polarization: 34.25 SS G_CDS: 0.41 Total: 34.65 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: 6.38 Total: 6.39 kcal Atomic # 7 Polarization: -117.33 SS G_CDS: -5.63 Total: -122.96 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: -0.06 Total: -22.90 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -62.11 3.12 -58.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054036004.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.176 kcal (2) G-P(sol) polarization free energy of solvation -62.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds