Wall clock time and date at job start Sat Apr 11 2020 06:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 N 1.28448 * 125.19245 * 2 1 4 4 C 1.30867 * 110.92872 * 180.27627 * 3 2 1 5 5 C 1.39672 * 107.85893 * 359.71821 * 4 3 2 6 6 C 1.36604 * 125.19293 * 179.79053 * 2 1 3 7 7 C 1.47158 * 126.88073 * 359.97438 * 6 2 1 8 8 O 1.21631 * 120.00101 * 354.21363 * 7 6 2 9 9 N 1.34773 * 119.99837 * 174.20871 * 7 6 2 10 10 C 1.46504 * 120.00077 * 184.55663 * 9 7 6 11 11 C 1.52992 * 109.47245 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.76640 * 65.74358 * 11 10 9 13 13 C 1.52793 * 109.81871 * 186.50663 * 11 10 9 14 14 C 1.50596 * 110.85127 * 167.20088 * 13 11 10 15 15 C 1.38971 * 117.63667 * 160.01790 * 14 13 11 16 16 C 1.37907 * 120.58423 * 178.85944 * 15 14 13 17 17 C 1.38269 * 119.82330 * 359.97438 * 16 15 14 18 18 C 1.37956 * 119.71893 * 0.25053 * 17 16 15 19 19 C 1.37674 * 122.84140 * 339.37013 * 14 13 11 20 20 C 1.50813 * 122.33515 * 2.11025 * 19 14 13 21 21 N 1.46675 * 109.69012 * 348.05620 * 20 19 14 22 22 C 1.36938 * 121.31580 * 224.41500 * 21 20 19 23 23 H 1.08000 * 119.99908 * 155.69078 * 22 21 20 24 24 C 1.38807 * 120.00045 * 335.68598 * 22 21 20 25 25 N 1.31619 * 120.00024 * 348.42751 * 24 22 21 26 26 Si 1.86798 * 120.00242 * 168.42998 * 24 22 21 27 27 H 1.48501 * 109.47290 * 89.99598 * 26 24 22 28 28 H 1.48499 * 109.47111 * 210.00336 * 26 24 22 29 29 H 1.48507 * 109.46934 * 330.00003 * 26 24 22 30 30 H 1.08997 * 109.47427 * 266.11440 * 1 2 3 31 31 H 1.09003 * 109.47161 * 26.10894 * 1 2 3 32 32 H 1.09004 * 109.47086 * 146.10883 * 1 2 3 33 33 H 1.07997 * 126.06905 * 179.74786 * 4 3 2 34 34 H 1.07998 * 127.31374 * 179.97438 * 5 4 3 35 35 H 0.97000 * 119.99950 * 4.56220 * 9 7 6 36 36 H 1.09008 * 109.46889 * 60.00355 * 10 9 7 37 37 H 1.09000 * 109.46914 * 300.00623 * 10 9 7 38 38 H 1.09004 * 109.20008 * 46.84831 * 13 11 10 39 39 H 1.08998 * 109.19929 * 287.55478 * 13 11 10 40 40 H 1.08006 * 119.70909 * 358.83849 * 15 14 13 41 41 H 1.07991 * 120.09148 * 179.97438 * 16 15 14 42 42 H 1.08000 * 120.13956 * 180.27901 * 17 16 15 43 43 H 1.08007 * 119.75156 * 180.02562 * 18 17 16 44 44 H 1.09001 * 109.42951 * 108.11842 * 20 19 14 45 45 H 1.08995 * 109.43343 * 228.02961 * 20 19 14 46 46 H 0.96999 * 120.00532 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2052 1.0497 0.0000 4 6 3.4735 0.7273 -0.0059 5 6 3.5611 -0.6667 -0.0036 6 6 2.2522 -1.1163 0.0041 7 6 1.7993 -2.5165 0.0097 8 8 0.6150 -2.7721 0.1174 9 7 2.6967 -3.5155 -0.1045 10 6 2.2391 -4.9040 -0.1994 11 6 3.4489 -5.8326 -0.3202 12 1 4.0331 -5.7984 0.5994 13 6 2.9799 -7.2631 -0.5816 14 6 4.1307 -8.1344 -1.0110 15 6 3.9821 -9.5098 -0.8790 16 6 4.9884 -10.3655 -1.2752 17 6 6.1562 -9.8531 -1.8094 18 6 6.3084 -8.4879 -1.9374 19 6 5.2986 -7.6253 -1.5328 20 6 5.5401 -6.1434 -1.6746 21 7 4.2856 -5.4152 -1.4574 22 6 3.9076 -4.3875 -2.2797 23 1 2.8638 -4.1260 -2.3724 24 6 4.8660 -3.6819 -2.9941 25 7 6.1427 -3.8403 -2.7165 26 14 4.3437 -2.5074 -4.3496 27 1 4.1319 -1.1536 -3.7772 28 1 5.4042 -2.4460 -5.3872 29 1 3.0794 -2.9891 -4.9620 30 1 -0.3634 -0.0696 1.0253 31 1 -0.3633 0.9228 -0.4523 32 1 -0.3633 -0.8531 -0.5731 33 1 4.3048 1.4167 -0.0111 34 1 4.4594 -1.2662 -0.0074 35 1 3.6456 -3.3152 -0.1237 36 1 1.6046 -5.0182 -1.0784 37 1 1.6709 -5.1611 0.6946 38 1 2.2241 -7.2547 -1.3670 39 1 2.5434 -7.6695 0.3307 40 1 3.0707 -9.9122 -0.4620 41 1 4.8647 -11.4330 -1.1686 42 1 6.9457 -10.5187 -2.1256 43 1 7.2202 -8.0871 -2.3550 44 1 6.2771 -5.8240 -0.9377 45 1 5.9133 -5.9310 -2.6764 46 1 6.8125 -3.3469 -3.2154 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054036005.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:21 Heat of formation + Delta-G solvation = 99.255862 kcal Electronic energy + Delta-G solvation = -29990.484693 eV Core-core repulsion = 26075.595068 eV Total energy + Delta-G solvation = -3914.889625 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.21200 -39.51280 -38.78312 -36.61641 -34.02319 -33.13553 -32.83016 -31.45742 -30.96334 -29.97061 -28.88383 -26.91733 -25.74569 -25.55475 -22.95146 -22.61578 -21.57170 -21.42398 -20.72211 -19.64159 -19.07224 -17.80457 -16.37487 -16.25028 -16.04351 -15.76198 -15.37064 -15.06649 -14.59484 -14.42945 -14.32047 -13.97389 -13.85145 -13.48078 -13.37939 -13.10744 -12.89793 -12.66990 -12.63074 -12.50840 -12.21385 -12.14617 -11.74262 -11.58943 -11.16320 -10.91774 -10.89375 -10.73198 -10.60062 -10.54586 -10.21526 -10.04965 -9.81205 -9.59737 -8.99812 -8.82970 -8.74685 -8.38079 -8.25072 -7.86412 -6.91199 -5.95190 -3.37185 1.60028 1.84627 1.92487 2.64118 2.87927 3.30381 3.37947 3.40651 3.58461 3.76855 4.26768 4.34923 4.74654 5.01572 5.10406 5.19280 5.24674 5.27421 5.34347 5.35499 5.44563 5.47924 5.54514 5.65904 5.67040 5.81250 5.88877 5.92276 5.99450 6.00921 6.11095 6.15219 6.24120 6.27961 6.52333 6.59544 6.73754 6.75825 6.92275 6.93652 6.94285 6.96171 7.12435 7.17721 7.47962 7.62452 7.67976 8.02548 8.20388 8.29642 8.62987 9.03249 9.63424 10.19265 11.13075 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014386 B = 0.003759 C = 0.003231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.898916 B = 7446.117184 C = 8663.687570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.265 5.265 3 N -0.288 5.288 4 C -0.007 4.007 5 C -0.177 4.177 6 C -0.030 4.030 7 C 0.584 3.416 8 O -0.566 6.566 9 N -0.675 5.675 10 C 0.137 3.863 11 C 0.157 3.843 12 H 0.044 0.956 13 C -0.090 4.090 14 C -0.069 4.069 15 C -0.127 4.127 16 C -0.141 4.141 17 C -0.130 4.130 18 C -0.123 4.123 19 C -0.076 4.076 20 C 0.204 3.796 21 N -0.589 5.589 22 C -0.248 4.248 23 H 0.073 0.927 24 C 0.010 3.990 25 N -0.904 5.904 26 Si 0.894 3.106 27 H -0.283 1.283 28 H -0.289 1.289 29 H -0.282 1.282 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.105 0.895 33 H 0.184 0.816 34 H 0.165 0.835 35 H 0.420 0.580 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.111 0.889 41 H 0.110 0.890 42 H 0.112 0.888 43 H 0.117 0.883 44 H 0.042 0.958 45 H 0.105 0.895 46 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.480 -2.284 5.809 7.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.053 5.053 3 N -0.121 5.121 4 C -0.183 4.183 5 C -0.206 4.206 6 C -0.158 4.158 7 C 0.369 3.631 8 O -0.448 6.448 9 N -0.325 5.325 10 C 0.013 3.987 11 C 0.050 3.950 12 H 0.061 0.939 13 C -0.129 4.129 14 C -0.069 4.069 15 C -0.146 4.146 16 C -0.159 4.159 17 C -0.148 4.148 18 C -0.142 4.142 19 C -0.078 4.078 20 C 0.079 3.921 21 N -0.313 5.313 22 C -0.376 4.376 23 H 0.091 0.909 24 C -0.189 4.189 25 N -0.549 5.549 26 Si 0.724 3.276 27 H -0.209 1.209 28 H -0.215 1.215 29 H -0.207 1.207 30 H 0.099 0.901 31 H 0.107 0.893 32 H 0.123 0.877 33 H 0.201 0.799 34 H 0.183 0.817 35 H 0.259 0.741 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.129 0.871 41 H 0.128 0.872 42 H 0.130 0.870 43 H 0.136 0.864 44 H 0.059 0.941 45 H 0.123 0.877 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.057 -1.456 5.772 7.811 hybrid contribution 0.920 -0.114 -0.976 1.347 sum -4.136 -1.571 4.796 6.525 Atomic orbital electron populations 1.22197 0.73009 1.05140 1.04439 1.45511 1.07630 1.01897 1.50294 1.73128 1.04451 1.13816 1.20741 1.23515 0.93292 0.95195 1.06288 1.22392 0.96120 0.95445 1.06645 1.21483 0.91377 0.89813 1.13170 1.16858 0.85690 0.83167 0.77376 1.90721 1.16549 1.84754 1.52735 1.45651 1.10949 1.05522 1.70386 1.21327 0.96468 0.79835 1.01049 1.20710 0.91319 0.91079 0.91871 0.93853 1.20871 0.95826 0.95794 1.00437 1.19467 0.95368 0.93067 0.99034 1.21118 0.98705 0.93244 1.01485 1.20846 0.94613 0.98794 1.01645 1.20957 0.97620 0.95326 1.00929 1.21120 0.99172 0.93027 1.00873 1.21033 0.92547 0.99475 0.94750 1.19885 0.87756 0.81550 1.02904 1.44060 1.21474 1.37087 1.28671 1.19139 0.92304 1.07188 1.19015 0.90916 1.24900 0.95374 0.98248 1.00332 1.69938 0.99268 1.43992 1.41700 0.86407 0.77691 0.81382 0.82157 1.20935 1.21505 1.20718 0.90066 0.89292 0.87692 0.79925 0.81742 0.74114 0.91242 0.91950 0.90779 0.91831 0.87113 0.87151 0.87012 0.86447 0.94083 0.87711 0.93353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.19 10.64 59.84 0.64 1.83 16 2 N -0.27 -4.40 3.75 -63.89 -0.24 -4.64 16 3 N -0.29 -4.78 11.90 30.59 0.36 -4.42 16 4 C -0.01 -0.11 12.03 -17.43 -0.21 -0.32 16 5 C -0.18 -2.96 10.50 -38.99 -0.41 -3.37 16 6 C -0.03 -0.54 6.96 -82.06 -0.57 -1.11 16 7 C 0.58 10.81 7.79 -12.64 -0.10 10.71 16 8 O -0.57 -11.13 14.88 5.25 0.08 -11.05 16 9 N -0.67 -12.17 3.93 -61.47 -0.24 -12.41 16 10 C 0.14 2.35 4.45 -4.04 -0.02 2.34 16 11 C 0.16 2.80 3.02 -67.65 -0.20 2.60 16 12 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 13 C -0.09 -1.45 5.21 -28.04 -0.15 -1.60 16 14 C -0.07 -1.20 5.76 -104.61 -0.60 -1.80 16 15 C -0.13 -1.94 9.59 -39.43 -0.38 -2.32 16 16 C -0.14 -2.02 10.04 -39.69 -0.40 -2.42 16 17 C -0.13 -1.93 10.05 -39.67 -0.40 -2.33 16 18 C -0.12 -2.09 9.62 -39.46 -0.38 -2.47 16 19 C -0.08 -1.44 5.82 -104.55 -0.61 -2.05 16 20 C 0.20 4.37 4.85 -5.04 -0.02 4.35 16 21 N -0.59 -12.53 2.87 -166.40 -0.48 -13.01 16 22 C -0.25 -5.80 7.13 -15.06 -0.11 -5.91 16 23 H 0.07 1.76 5.98 -52.49 -0.31 1.45 16 24 C 0.01 0.25 5.10 -17.43 -0.09 0.16 16 25 N -0.90 -22.89 10.82 55.49 0.60 -22.29 16 26 Si 0.89 20.68 29.57 -169.99 -5.03 15.66 16 27 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 28 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 29 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 30 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.10 1.44 6.69 -51.93 -0.35 1.09 16 33 H 0.18 2.20 8.06 -52.49 -0.42 1.78 16 34 H 0.17 2.63 7.59 -52.49 -0.40 2.23 16 35 H 0.42 7.90 6.37 -40.82 -0.26 7.64 16 36 H 0.07 1.29 7.33 -51.92 -0.38 0.91 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.07 1.23 8.02 -51.93 -0.42 0.81 16 39 H 0.06 0.87 8.10 -51.93 -0.42 0.44 16 40 H 0.11 1.43 8.05 -52.48 -0.42 1.01 16 41 H 0.11 1.29 8.06 -52.49 -0.42 0.86 16 42 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 43 H 0.12 1.88 8.05 -52.48 -0.42 1.45 16 44 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 45 H 0.11 2.54 6.17 -51.93 -0.32 2.22 16 46 H 0.26 6.45 8.31 -40.82 -0.34 6.11 16 LS Contribution 373.14 15.07 5.62 5.62 Total: -1.00 -28.22 373.14 -9.55 -37.76 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: -6.22 Total: 12.47 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: -4.01 Total: -3.71 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: 0.01 Total: -56.76 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.08 Total: -11.05 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.03 Total: 15.66 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -28.22 -9.55 -37.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054036005.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.019 kcal (2) G-P(sol) polarization free energy of solvation -28.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds