Wall clock time and date at job start Sat Apr 11 2020 06:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34498 * 126.46572 * 2 1 4 4 N 1.30862 * 109.16070 * 180.02562 * 3 2 1 5 5 C 1.33321 * 109.68255 * 359.76302 * 4 3 2 6 6 C 1.36664 * 107.78883 * 0.38015 * 5 4 3 7 7 C 1.46764 * 126.84766 * 179.89825 * 6 5 4 8 8 O 1.21678 * 120.00066 * 184.84644 * 7 6 5 9 9 N 1.34778 * 119.99844 * 4.84590 * 7 6 5 10 10 C 1.46491 * 120.00075 * 174.13747 * 9 7 6 11 11 C 1.53000 * 109.47418 * 179.97438 * 10 9 7 12 12 H 1.09006 * 109.76504 * 64.25034 * 11 10 9 13 13 C 1.52789 * 109.77893 * 184.99682 * 11 10 9 14 14 C 1.50595 * 110.86014 * 167.05694 * 13 11 10 15 15 C 1.38983 * 117.61072 * 160.41364 * 14 13 11 16 16 C 1.37907 * 120.58633 * 179.53871 * 15 14 13 17 17 C 1.38272 * 119.82651 * 359.95715 * 16 15 14 18 18 C 1.37963 * 119.71330 * 0.23881 * 17 16 15 19 19 C 1.37673 * 122.87432 * 340.30515 * 14 13 11 20 20 C 1.50814 * 122.35902 * 0.76331 * 19 14 13 21 21 N 1.46690 * 109.66367 * 348.90779 * 20 19 14 22 22 C 1.36938 * 121.34556 * 224.35401 * 21 20 19 23 23 H 1.08002 * 119.99643 * 156.92469 * 22 21 20 24 24 C 1.38812 * 119.99897 * 336.92201 * 22 21 20 25 25 N 1.31615 * 120.00224 * 348.12570 * 24 22 21 26 26 Si 1.86802 * 119.99643 * 168.11970 * 24 22 21 27 27 H 1.48500 * 109.47030 * 90.00661 * 26 24 22 28 28 H 1.48499 * 109.46790 * 210.00309 * 26 24 22 29 29 H 1.48495 * 109.47269 * 330.00094 * 26 24 22 30 30 H 1.08994 * 109.47414 * 267.05530 * 1 2 3 31 31 H 1.09002 * 109.47052 * 27.06134 * 1 2 3 32 32 H 1.09006 * 109.46674 * 147.05810 * 1 2 3 33 33 H 1.07995 * 125.42023 * 359.97438 * 3 2 1 34 34 H 1.07999 * 126.10433 * 180.27540 * 5 4 3 35 35 H 0.97002 * 119.99488 * 354.12819 * 9 7 6 36 36 H 1.09002 * 109.47541 * 59.99694 * 10 9 7 37 37 H 1.09007 * 109.47291 * 299.99742 * 10 9 7 38 38 H 1.08999 * 109.20022 * 287.41298 * 13 11 10 39 39 H 1.08996 * 109.20045 * 46.70277 * 13 11 10 40 40 H 1.07996 * 119.70912 * 359.55441 * 15 14 13 41 41 H 1.07997 * 120.09014 * 179.97438 * 16 15 14 42 42 H 1.08002 * 120.14230 * 180.26179 * 17 16 15 43 43 H 1.07994 * 119.74097 * 179.97438 * 18 17 16 44 44 H 1.08994 * 109.43930 * 228.84930 * 20 19 14 45 45 H 1.09003 * 109.43752 * 108.96435 * 20 19 14 46 46 H 0.96999 * 120.00032 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2644 1.0816 0.0000 4 7 3.5138 0.6924 -0.0006 5 6 3.5691 -0.6397 0.0043 6 6 2.2863 -1.1108 -0.0006 7 6 1.8650 -2.5167 0.0000 8 8 0.6850 -2.7983 -0.0938 9 7 2.7853 -3.4959 0.1044 10 6 2.3586 -4.8912 0.2343 11 6 3.5899 -5.7939 0.3340 12 1 4.1415 -5.5656 1.2461 13 6 3.1572 -7.2593 0.3448 14 6 4.3375 -8.1685 0.1257 15 6 4.2077 -9.4971 0.5127 16 6 5.2468 -10.3855 0.3315 17 6 6.4291 -9.9535 -0.2408 18 6 6.5622 -8.6343 -0.6222 19 6 5.5182 -7.7381 -0.4365 20 6 5.7337 -6.3086 -0.8660 21 7 4.4570 -5.5868 -0.8377 22 6 4.0864 -4.7544 -1.8600 23 1 3.0425 -4.5302 -2.0223 24 6 5.0526 -4.1989 -2.6875 25 7 6.3246 -4.2763 -2.3584 26 14 4.5473 -3.3416 -4.2685 27 1 4.3083 -1.9015 -3.9960 28 1 5.6298 -3.4819 -5.2753 29 1 3.3023 -3.9600 -4.7908 30 1 -0.3634 -0.0528 1.0262 31 1 -0.3633 0.9152 -0.4675 32 1 -0.3633 -0.8625 -0.5589 33 1 1.9287 2.1081 -0.0004 34 1 4.4674 -1.2393 0.0092 35 1 3.7301 -3.2766 0.0933 36 1 1.7708 -5.1743 -0.6389 37 1 1.7517 -5.0035 1.1328 38 1 2.7000 -7.4909 1.3068 39 1 2.4266 -7.4231 -0.4472 40 1 3.2848 -9.8368 0.9590 41 1 5.1374 -11.4160 0.6356 42 1 7.2447 -10.6458 -0.3890 43 1 7.4855 -8.2963 -1.0689 44 1 6.1380 -6.2909 -1.8780 45 1 6.4374 -5.8278 -0.1864 46 1 6.9996 -3.8877 -2.9365 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054045126.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:36 Heat of formation + Delta-G solvation = 82.330996 kcal Electronic energy + Delta-G solvation = -29883.891263 eV Core-core repulsion = 25968.267721 eV Total energy + Delta-G solvation = -3915.623542 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.97404 -39.47201 -38.70614 -36.57484 -34.23792 -33.55078 -32.92353 -31.41860 -30.66078 -29.62674 -28.74012 -26.99308 -25.68868 -25.50676 -22.92349 -22.58940 -21.54725 -21.34494 -20.78403 -19.68318 -19.02933 -17.74625 -16.45842 -16.27080 -15.82675 -15.75742 -15.43115 -15.20922 -14.58467 -14.36021 -14.30159 -13.93233 -13.80674 -13.73048 -13.41620 -13.02860 -12.89694 -12.82430 -12.64200 -12.60811 -12.46307 -12.17053 -11.72354 -11.55595 -11.14577 -10.89280 -10.86670 -10.70017 -10.51696 -10.18586 -10.16197 -10.01237 -9.70671 -9.57867 -9.46215 -8.81589 -8.58560 -8.26683 -8.21510 -7.83697 -6.89513 -5.91073 -3.32272 1.58090 1.86684 1.94688 2.67748 3.07580 3.33544 3.41402 3.43344 3.71607 3.79382 4.28924 4.38427 4.68468 4.77382 5.03145 5.12464 5.18170 5.21093 5.27381 5.36398 5.38047 5.46811 5.52289 5.56702 5.69125 5.72614 5.85290 5.92680 5.99173 6.02431 6.17924 6.23495 6.26629 6.32723 6.54786 6.61911 6.71512 6.76218 6.94327 6.96236 6.99852 7.15215 7.18244 7.21066 7.50689 7.65808 7.71960 8.00453 8.14764 8.23832 8.66996 9.07101 9.67381 10.22482 11.17183 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013693 B = 0.003706 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.328794 B = 7554.290639 C = 8734.635784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.432 5.432 3 C 0.193 3.807 4 N -0.498 5.498 5 C 0.044 3.956 6 C -0.077 4.077 7 C 0.589 3.411 8 O -0.569 6.569 9 N -0.679 5.679 10 C 0.138 3.862 11 C 0.158 3.842 12 H 0.044 0.956 13 C -0.090 4.090 14 C -0.069 4.069 15 C -0.128 4.128 16 C -0.141 4.141 17 C -0.130 4.130 18 C -0.123 4.123 19 C -0.076 4.076 20 C 0.203 3.797 21 N -0.589 5.589 22 C -0.247 4.247 23 H 0.075 0.925 24 C 0.008 3.992 25 N -0.905 5.905 26 Si 0.896 3.104 27 H -0.285 1.285 28 H -0.289 1.289 29 H -0.281 1.281 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.103 0.897 33 H 0.208 0.792 34 H 0.183 0.817 35 H 0.418 0.582 36 H 0.071 0.929 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.111 0.889 41 H 0.110 0.890 42 H 0.112 0.888 43 H 0.118 0.882 44 H 0.108 0.892 45 H 0.041 0.959 46 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.263 0.282 7.052 9.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.113 5.113 3 C -0.089 4.089 4 N -0.217 5.217 5 C -0.110 4.110 6 C -0.194 4.194 7 C 0.375 3.625 8 O -0.451 6.451 9 N -0.329 5.329 10 C 0.014 3.986 11 C 0.050 3.950 12 H 0.061 0.939 13 C -0.129 4.129 14 C -0.069 4.069 15 C -0.146 4.146 16 C -0.159 4.159 17 C -0.148 4.148 18 C -0.142 4.142 19 C -0.078 4.078 20 C 0.078 3.922 21 N -0.313 5.313 22 C -0.375 4.375 23 H 0.092 0.908 24 C -0.191 4.191 25 N -0.550 5.550 26 Si 0.726 3.274 27 H -0.212 1.212 28 H -0.215 1.215 29 H -0.207 1.207 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.122 0.878 33 H 0.225 0.775 34 H 0.200 0.800 35 H 0.256 0.744 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.092 0.908 40 H 0.129 0.871 41 H 0.128 0.872 42 H 0.130 0.870 43 H 0.136 0.864 44 H 0.126 0.874 45 H 0.059 0.941 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.465 0.681 6.887 9.471 hybrid contribution -0.405 -0.086 -1.025 1.106 sum -6.870 0.595 5.862 9.051 Atomic orbital electron populations 1.22207 0.75744 1.05145 1.04066 1.45203 1.08053 1.05930 1.52155 1.25054 0.85831 0.93432 1.04599 1.70141 1.18841 1.12490 1.20183 1.22798 0.95725 0.90984 1.01505 1.20904 0.91381 0.89086 1.18016 1.16708 0.85577 0.83149 0.77095 1.90715 1.17360 1.84179 1.52870 1.45564 1.10500 1.05722 1.71118 1.21310 0.96484 0.79839 1.00960 1.20706 0.90994 0.91514 0.91763 0.93863 1.20872 0.95557 0.95649 1.00865 1.19466 0.95243 0.93656 0.98562 1.21115 0.98501 0.93469 1.01487 1.20843 0.94257 0.98882 1.01947 1.20958 0.97529 0.95973 1.00385 1.21121 0.99025 0.93184 1.00854 1.21041 0.92353 0.99226 0.95158 1.19930 0.87531 0.82424 1.02363 1.44074 1.18487 1.50884 1.17828 1.19168 0.92339 1.20444 1.05597 0.90755 1.24891 0.95472 0.99020 0.99687 1.69928 0.99341 1.48240 1.37500 0.86373 0.77593 0.79770 0.83672 1.21151 1.21508 1.20689 0.90514 0.89778 0.87826 0.77527 0.80035 0.74366 0.91105 0.92196 0.91867 0.90787 0.87138 0.87172 0.87024 0.86443 0.87420 0.94150 0.93359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.75 10.67 59.85 0.64 1.39 16 2 N -0.43 -6.17 3.17 -121.97 -0.39 -6.56 16 3 C 0.19 2.57 12.52 -90.57 -1.13 1.44 16 4 N -0.50 -8.35 11.20 -14.43 -0.16 -8.51 16 5 C 0.04 0.76 11.37 -17.47 -0.20 0.56 16 6 C -0.08 -1.34 6.91 -82.14 -0.57 -1.90 16 7 C 0.59 10.92 7.78 -12.81 -0.10 10.82 16 8 O -0.57 -11.37 14.94 5.21 0.08 -11.30 16 9 N -0.68 -12.34 3.99 -61.60 -0.25 -12.59 16 10 C 0.14 2.40 4.43 -4.05 -0.02 2.38 16 11 C 0.16 2.84 2.99 -67.64 -0.20 2.64 16 12 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 13 C -0.09 -1.47 5.21 -28.04 -0.15 -1.62 16 14 C -0.07 -1.22 5.76 -104.60 -0.60 -1.82 16 15 C -0.13 -1.97 9.59 -39.43 -0.38 -2.35 16 16 C -0.14 -2.06 10.04 -39.69 -0.40 -2.45 16 17 C -0.13 -1.97 10.05 -39.67 -0.40 -2.37 16 18 C -0.12 -2.13 9.62 -39.46 -0.38 -2.51 16 19 C -0.08 -1.46 5.82 -104.55 -0.61 -2.07 16 20 C 0.20 4.42 4.87 -5.03 -0.02 4.40 16 21 N -0.59 -12.77 2.88 -166.37 -0.48 -13.24 16 22 C -0.25 -5.91 7.30 -15.06 -0.11 -6.02 16 23 H 0.07 1.84 5.94 -52.49 -0.31 1.53 16 24 C 0.01 0.20 5.10 -17.43 -0.09 0.11 16 25 N -0.91 -23.51 10.75 55.49 0.60 -22.91 16 26 Si 0.90 21.17 29.57 -169.99 -5.03 16.14 16 27 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 28 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 29 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.10 1.34 6.56 -51.93 -0.34 1.00 16 33 H 0.21 1.73 8.06 -52.49 -0.42 1.31 16 34 H 0.18 3.10 7.46 -52.49 -0.39 2.71 16 35 H 0.42 7.90 6.43 -40.82 -0.26 7.64 16 36 H 0.07 1.35 7.26 -51.93 -0.38 0.98 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.06 0.87 8.11 -51.93 -0.42 0.45 16 39 H 0.07 1.25 8.03 -51.93 -0.42 0.83 16 40 H 0.11 1.45 8.05 -52.49 -0.42 1.03 16 41 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 42 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 43 H 0.12 1.91 8.05 -52.49 -0.42 1.49 16 44 H 0.11 2.66 6.09 -51.93 -0.32 2.35 16 45 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 46 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 LS Contribution 373.04 15.07 5.62 5.62 Total: -1.00 -29.83 373.04 -10.92 -40.75 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: -6.20 Total: 11.96 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: -4.72 Total: 0.63 kcal Atomic # 7 Polarization: -63.13 SS G_CDS: -0.68 Total: -63.81 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: 0.08 Total: -11.30 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.14 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.83 -10.92 -40.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054045126.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.078 kcal (2) G-P(sol) polarization free energy of solvation -29.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds