Wall clock time and date at job start Sat Apr 11 2020 06:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46501 * 109.46806 * 2 1 4 4 C 1.34264 * 125.75021 * 125.26703 * 3 2 1 5 5 C 1.38045 * 107.41360 * 180.14403 * 4 3 2 6 6 C 1.47424 * 126.40989 * 179.87140 * 5 4 3 7 7 O 1.21599 * 120.00549 * 359.71410 * 6 5 4 8 8 N 1.34782 * 119.99772 * 179.71390 * 6 5 4 9 9 C 1.46501 * 120.00096 * 180.02562 * 8 6 5 10 10 C 1.50694 * 109.47405 * 179.97438 * 9 8 6 11 11 C 1.38258 * 120.02332 * 270.22002 * 10 9 8 12 12 C 1.38143 * 119.96364 * 180.23476 * 11 10 9 13 13 C 1.38449 * 120.10356 * 359.52277 * 12 11 10 14 14 C 1.38065 * 119.93194 * 0.25758 * 13 12 11 15 15 C 1.38148 * 120.01921 * 89.99621 * 10 9 8 16 16 C 1.50781 * 108.86152 * 179.97438 * 14 13 12 17 17 N 1.46634 * 107.70246 * 0.02562 * 16 14 13 18 18 C 1.36929 * 126.56839 * 180.02562 * 17 16 14 19 19 H 1.08005 * 120.00070 * 0.02562 * 18 17 16 20 20 C 1.38814 * 120.00426 * 179.97438 * 18 17 16 21 21 N 1.31617 * 119.99648 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 120.00072 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46834 * 59.99976 * 22 20 18 24 24 H 1.48492 * 109.46918 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.46892 * 300.00105 * 22 20 18 26 26 C 1.46643 * 106.87045 * 359.97438 * 17 16 14 27 27 C 1.41289 * 107.17110 * 359.60907 * 5 4 3 28 28 N 1.30446 * 108.02253 * 0.24330 * 27 5 4 29 29 H 1.08997 * 109.47046 * 59.99973 * 1 2 3 30 30 H 1.09003 * 109.46745 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47108 * 299.99611 * 1 2 3 32 32 H 1.08998 * 109.47108 * 240.00389 * 2 1 3 33 33 H 1.08997 * 109.47046 * 120.00026 * 2 1 3 34 34 H 1.08000 * 126.29182 * 359.97438 * 4 3 2 35 35 H 0.96997 * 120.00206 * 359.97438 * 8 6 5 36 36 H 1.09005 * 109.47248 * 59.99819 * 9 8 6 37 37 H 1.09003 * 109.47210 * 300.00035 * 9 8 6 38 38 H 1.07998 * 120.01283 * 0.03461 * 11 10 9 39 39 H 1.08002 * 119.95132 * 179.80781 * 12 11 10 40 40 H 1.08002 * 119.94394 * 0.03126 * 15 10 9 41 41 H 1.09000 * 109.81260 * 119.54868 * 16 14 13 42 42 H 1.08998 * 109.81519 * 240.45467 * 16 14 13 43 43 H 0.97001 * 119.99333 * 179.97438 * 21 20 18 44 44 H 1.09002 * 109.80797 * 240.45438 * 26 17 16 45 45 H 1.08999 * 109.81012 * 119.54608 * 26 17 16 46 46 H 1.07997 * 125.98381 * 180.20925 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8730 1.9112 0.8897 5 6 3.0707 3.2311 0.5370 6 6 3.9322 4.2034 1.2340 7 8 4.5499 3.8671 2.2260 8 7 4.0352 5.4653 0.7717 9 6 4.8917 6.4314 1.4639 10 6 4.8316 7.7575 0.7506 11 6 5.7255 8.0370 -0.2665 12 6 5.6724 9.2549 -0.9163 13 6 4.7192 10.1925 -0.5573 14 6 3.8237 9.9117 0.4553 15 6 3.8804 8.6929 1.1095 16 6 2.9071 11.0950 0.6375 17 7 3.3030 12.1194 -0.3340 18 6 2.7271 13.3503 -0.5020 19 1 1.8939 13.6459 0.1184 20 6 3.2147 14.2186 -1.4691 21 7 4.2310 13.8590 -2.2242 22 14 2.4284 15.8975 -1.6988 23 1 2.5350 16.6710 -0.4355 24 1 3.1278 16.6269 -2.7869 25 1 0.9972 15.7290 -2.0568 26 6 4.4347 11.5739 -1.0904 27 6 2.2977 3.4739 -0.6205 28 7 1.6771 2.3691 -0.9304 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.3210 1.3996 1.7287 35 1 3.5428 5.7335 -0.0198 36 1 5.9193 6.0680 1.4686 37 1 4.5451 6.5544 2.4900 38 1 6.4667 7.3047 -0.5506 39 1 6.3728 9.4742 -1.7087 40 1 3.1803 8.4731 1.9019 41 1 1.8751 10.7942 0.4568 42 1 3.0067 11.4870 1.6496 43 1 4.5714 14.4657 -2.9002 44 1 5.3099 12.2096 -0.9556 45 1 4.1784 11.5159 -2.1482 46 1 2.2318 4.4102 -1.1546 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054259507.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:47 Heat of formation + Delta-G solvation = 96.348851 kcal Electronic energy + Delta-G solvation = -27510.909864 eV Core-core repulsion = 23595.894181 eV Total energy + Delta-G solvation = -3915.015683 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.68863 -39.82702 -39.04404 -36.31972 -34.97905 -34.42032 -32.26538 -31.25918 -30.90602 -30.19001 -29.48612 -27.40725 -26.01562 -24.84366 -24.12590 -22.77148 -21.99496 -21.03362 -20.41773 -20.26661 -19.95105 -18.22014 -17.01411 -16.41942 -16.07919 -15.98612 -15.53366 -15.24830 -14.90556 -14.63814 -14.49702 -14.33259 -14.26815 -14.06795 -13.74739 -13.23275 -13.14932 -12.99321 -12.94883 -12.64156 -12.35851 -12.00531 -11.92872 -11.82651 -11.65222 -11.54125 -11.28220 -11.08175 -10.82468 -10.47499 -10.23174 -10.15858 -10.00992 -9.95335 -9.79550 -9.22798 -8.94881 -8.88957 -8.40249 -8.01243 -6.85818 -5.81984 -3.15224 1.24393 1.59040 1.76135 1.90789 1.95513 3.29347 3.34513 3.37884 3.41689 3.43215 3.95387 4.18047 4.35734 4.39786 4.40778 4.51480 4.63072 4.74544 4.87471 4.99719 5.01099 5.09483 5.26068 5.27325 5.33350 5.41271 5.42709 5.54018 5.57996 5.59460 5.74350 5.87793 6.04028 6.08429 6.12954 6.36888 6.44694 6.51347 6.55025 6.56016 6.78406 6.81435 7.06341 7.19108 7.32847 7.36012 7.50753 7.52629 7.68406 8.12958 8.20176 9.10890 9.70769 10.37954 11.32059 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018851 B = 0.001886 C = 0.001791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.986217 B =14845.482004 C =15627.084452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.126 3.874 3 N -0.362 5.362 4 C 0.126 3.874 5 C -0.293 4.293 6 C 0.594 3.406 7 O -0.556 6.556 8 N -0.720 5.720 9 C 0.172 3.828 10 C -0.132 4.132 11 C -0.103 4.103 12 C -0.113 4.113 13 C -0.081 4.081 14 C -0.107 4.107 15 C -0.083 4.083 16 C 0.175 3.825 17 N -0.600 5.600 18 C -0.227 4.227 19 H 0.083 0.917 20 C -0.007 4.007 21 N -0.923 5.923 22 Si 0.918 3.082 23 H -0.284 1.284 24 H -0.289 1.289 25 H -0.284 1.284 26 C 0.205 3.795 27 C 0.083 3.917 28 N -0.294 5.294 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.089 0.911 33 H 0.100 0.900 34 H 0.187 0.813 35 H 0.402 0.598 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.117 0.883 41 H 0.036 0.964 42 H 0.036 0.964 43 H 0.256 0.744 44 H 0.064 0.936 45 H 0.064 0.936 46 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.304 -27.259 4.353 27.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.005 3.995 3 N -0.141 5.141 4 C -0.025 4.025 5 C -0.308 4.308 6 C 0.382 3.618 7 O -0.435 6.435 8 N -0.371 5.371 9 C 0.050 3.950 10 C -0.132 4.132 11 C -0.122 4.122 12 C -0.131 4.131 13 C -0.082 4.082 14 C -0.108 4.108 15 C -0.102 4.102 16 C 0.050 3.950 17 N -0.327 5.327 18 C -0.354 4.354 19 H 0.101 0.899 20 C -0.203 4.203 21 N -0.570 5.570 22 Si 0.748 3.252 23 H -0.210 1.210 24 H -0.215 1.215 25 H -0.210 1.210 26 C 0.081 3.919 27 C -0.105 4.105 28 N -0.114 5.114 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.081 0.919 32 H 0.107 0.893 33 H 0.118 0.882 34 H 0.204 0.796 35 H 0.236 0.764 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.135 0.865 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.066 0.934 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -2.711 -27.995 4.101 28.424 hybrid contribution 0.009 1.434 -0.020 1.434 sum -2.701 -26.561 4.081 27.008 Atomic orbital electron populations 1.22064 0.93312 1.03161 1.03890 1.21840 0.96521 0.76839 1.04282 1.48674 1.34127 1.10684 1.20639 1.22984 0.91545 0.93603 0.94372 1.20272 1.11683 0.95370 1.03495 1.17229 0.80209 0.81234 0.83116 1.90763 1.47328 1.78936 1.26471 1.45919 1.48829 1.10337 1.31968 1.20084 0.94906 0.84744 0.95278 1.19476 0.98702 0.95518 0.99507 1.20828 0.98784 0.96678 0.95878 1.20500 0.98847 0.93020 1.00734 1.21542 0.93532 0.97911 0.95204 1.20722 0.98161 0.95169 0.96708 1.20310 0.98042 0.92285 0.99598 1.19705 0.94755 0.86444 0.94118 1.43943 1.36096 1.13946 1.38706 1.18932 1.11881 0.88920 1.15688 0.89914 1.24837 0.98312 0.98936 0.98260 1.69913 1.26707 1.36226 1.24171 0.86101 0.78441 0.83206 0.77433 1.21008 1.21493 1.21019 1.19740 0.91802 0.84905 0.95452 1.24131 0.93938 0.97514 0.94952 1.77164 1.23809 0.97134 1.13295 0.90845 0.90421 0.91897 0.89253 0.88212 0.79573 0.76387 0.90817 0.90813 0.86301 0.86149 0.86517 0.94614 0.94603 0.93416 0.91808 0.91805 0.79258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.71 10.09 37.16 0.37 -0.33 16 2 C 0.13 0.54 7.21 -4.04 -0.03 0.51 16 3 N -0.36 -2.92 3.65 -60.80 -0.22 -3.15 16 4 C 0.13 1.09 11.25 -16.56 -0.19 0.90 16 5 C -0.29 -3.02 6.13 -105.07 -0.64 -3.67 16 6 C 0.59 7.24 7.81 -12.52 -0.10 7.14 16 7 O -0.56 -8.49 16.90 5.28 0.09 -8.40 16 8 N -0.72 -7.82 5.54 -62.56 -0.35 -8.17 16 9 C 0.17 2.03 5.80 -5.20 -0.03 2.00 16 10 C -0.13 -1.76 5.25 -104.65 -0.55 -2.30 16 11 C -0.10 -1.41 9.70 -39.61 -0.38 -1.80 16 12 C -0.11 -1.83 10.05 -39.54 -0.40 -2.23 16 13 C -0.08 -1.60 6.22 -104.57 -0.65 -2.25 16 14 C -0.11 -2.01 6.22 -104.57 -0.65 -2.66 16 15 C -0.08 -1.26 9.70 -39.54 -0.38 -1.64 16 16 C 0.18 3.73 7.25 -5.08 -0.04 3.69 16 17 N -0.60 -15.46 3.41 -175.67 -0.60 -16.06 16 18 C -0.23 -6.25 10.32 -15.06 -0.16 -6.41 16 19 H 0.08 2.17 7.83 -52.48 -0.41 1.76 16 20 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 21 N -0.92 -26.58 10.44 55.49 0.58 -26.00 16 22 Si 0.92 21.71 29.55 -169.99 -5.02 16.69 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 C 0.21 5.00 5.39 -5.08 -0.03 4.98 16 27 C 0.08 0.78 11.50 -16.98 -0.20 0.59 16 28 N -0.29 -3.00 12.33 30.86 0.38 -2.62 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.10 0.17 8.06 -51.93 -0.42 -0.25 16 34 H 0.19 1.16 8.06 -52.49 -0.42 0.74 16 35 H 0.40 3.75 7.42 -40.82 -0.30 3.45 16 36 H 0.07 0.86 8.09 -51.93 -0.42 0.44 16 37 H 0.07 0.89 8.09 -51.93 -0.42 0.47 16 38 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 39 H 0.12 1.79 8.06 -52.49 -0.42 1.36 16 40 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 41 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 44 H 0.06 1.71 7.49 -51.93 -0.39 1.32 16 45 H 0.06 1.70 7.49 -51.93 -0.39 1.31 16 46 H 0.19 1.32 7.50 -52.49 -0.39 0.93 16 LS Contribution 389.88 15.07 5.88 5.88 Total: -1.00 -34.01 389.88 -9.91 -43.92 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -6.51 Total: 1.68 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: -4.14 Total: -3.77 kcal Atomic # 7 Polarization: -55.79 SS G_CDS: -0.21 Total: -56.00 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: 0.09 Total: -8.40 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.01 -9.91 -43.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054259507.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.271 kcal (2) G-P(sol) polarization free energy of solvation -34.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds