Wall clock time and date at job start Sat Apr 11 2020 06:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.47301 * 2 1 4 4 N 1.28446 * 125.18603 * 274.43336 * 3 2 1 5 5 C 1.30864 * 110.92021 * 180.16093 * 4 3 2 6 6 C 1.39668 * 107.86649 * 359.61101 * 5 4 3 7 7 C 1.36593 * 125.19079 * 94.16775 * 3 2 1 8 8 C 1.47165 * 126.88710 * 359.97438 * 7 3 2 9 9 O 1.21627 * 119.99829 * 354.36271 * 8 7 3 10 10 N 1.34778 * 120.00243 * 174.36024 * 8 7 3 11 11 C 1.46500 * 120.00110 * 185.12716 * 10 8 7 12 12 C 1.50701 * 109.46706 * 179.97438 * 11 10 8 13 13 C 1.38257 * 120.01924 * 90.00301 * 12 11 10 14 14 C 1.38146 * 119.96181 * 179.97438 * 13 12 11 15 15 C 1.38440 * 120.10549 * 359.97366 * 14 13 12 16 16 C 1.38071 * 119.93274 * 0.02562 * 15 14 13 17 17 C 1.38139 * 120.02038 * 269.72084 * 12 11 10 18 18 C 1.50783 * 108.86232 * 180.02562 * 16 15 14 19 19 N 1.46641 * 107.69824 * 359.97438 * 18 16 15 20 20 C 1.36935 * 126.56064 * 179.97438 * 19 18 16 21 21 H 1.08002 * 120.00018 * 354.86562 * 20 19 18 22 22 C 1.38809 * 119.99802 * 174.85691 * 20 19 18 23 23 N 1.31620 * 120.00261 * 5.43695 * 22 20 19 24 24 Si 1.86806 * 120.00034 * 185.43179 * 22 20 19 25 25 H 1.48500 * 109.46900 * 94.99839 * 24 22 20 26 26 H 1.48492 * 109.47148 * 215.00405 * 24 22 20 27 27 H 1.48508 * 109.46986 * 335.00061 * 24 22 20 28 28 C 1.46636 * 106.87437 * 0.02562 * 19 18 16 29 29 H 1.09001 * 109.46963 * 300.00469 * 1 2 3 30 30 H 1.09004 * 109.46668 * 60.00415 * 1 2 3 31 31 H 1.08994 * 109.47406 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47258 * 239.99451 * 2 1 3 33 33 H 1.09004 * 109.46668 * 119.99584 * 2 1 3 34 34 H 1.08002 * 126.06396 * 179.87805 * 5 4 3 35 35 H 1.07998 * 127.32017 * 180.24168 * 6 5 4 36 36 H 0.97004 * 119.99960 * 5.12071 * 10 8 7 37 37 H 1.09001 * 109.46447 * 299.99608 * 11 10 8 38 38 H 1.08995 * 109.47073 * 59.99838 * 11 10 8 39 39 H 1.08002 * 120.01448 * 359.97112 * 13 12 11 40 40 H 1.07999 * 119.94627 * 179.97438 * 14 13 12 41 41 H 1.08003 * 119.94977 * 0.02562 * 17 12 11 42 42 H 1.08999 * 109.81028 * 119.54242 * 18 16 15 43 43 H 1.09000 * 109.81078 * 240.45241 * 18 16 15 44 44 H 0.96996 * 120.00011 * 179.97438 * 23 22 20 45 45 H 1.08991 * 109.81218 * 240.45107 * 28 19 18 46 46 H 1.09002 * 109.80606 * 119.54608 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.1886 2.1061 -1.0466 5 6 2.6381 3.2923 -0.7254 6 6 2.7628 3.3413 0.6649 7 6 2.3573 2.0963 1.1133 8 6 2.3018 1.6356 2.5099 9 8 1.8267 0.5473 2.7728 10 7 2.7774 2.4196 3.4976 11 6 2.8257 1.9171 4.8729 12 6 3.3948 2.9804 5.7765 13 6 2.5538 3.8934 6.3853 14 6 3.0767 4.8673 7.2138 15 6 4.4417 4.9304 7.4361 16 6 5.2815 4.0186 6.8281 17 6 4.7564 3.0398 6.0016 18 6 6.7017 4.3138 7.2400 19 7 6.6731 5.4698 8.1418 20 6 7.7514 6.0619 8.7433 21 1 8.7348 5.6285 8.6364 22 6 7.5804 7.2193 9.4904 23 7 6.3704 7.6881 9.7100 24 14 9.0679 8.1115 10.1841 25 1 9.4733 9.1954 9.2536 26 1 8.7230 8.6959 11.5048 27 1 10.1899 7.1520 10.3452 28 6 5.2688 5.8696 8.2770 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.8675 4.0930 -1.4130 35 1 3.1031 4.1738 1.2628 36 1 3.0878 3.3167 3.2979 37 1 1.8184 1.6612 5.2017 38 1 3.4576 1.0299 4.9135 39 1 1.4887 3.8452 6.2131 40 1 2.4196 5.5807 7.6889 41 1 5.4128 2.3240 5.5292 42 1 7.1231 3.4518 7.7571 43 1 7.3007 4.5470 6.3598 44 1 6.2509 8.4967 10.2324 45 1 5.1401 6.8924 7.9230 46 1 4.9631 5.7977 9.3208 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054262391.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:51 Heat of formation + Delta-G solvation = 99.862692 kcal Electronic energy + Delta-G solvation = -27984.731532 eV Core-core repulsion = 24069.868221 eV Total energy + Delta-G solvation = -3914.863311 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.81153 -39.99994 -39.30457 -36.46881 -35.11545 -34.38589 -32.40379 -31.64568 -30.85014 -30.07810 -29.69458 -27.53919 -26.09407 -24.89759 -24.24230 -23.04131 -22.09837 -21.57166 -20.48654 -20.43959 -19.88996 -18.31877 -17.06645 -16.57291 -16.33017 -15.92287 -15.59097 -15.26192 -15.02861 -14.81575 -14.55245 -14.40189 -14.26488 -14.12204 -14.08485 -13.33092 -13.22908 -13.07203 -12.89599 -12.55302 -12.43639 -12.01109 -11.91634 -11.73091 -11.65506 -11.59381 -11.12342 -11.09868 -10.88193 -10.53716 -10.38421 -10.25522 -10.16807 -9.85206 -9.59274 -9.36293 -9.23155 -8.98477 -8.48080 -8.08338 -6.89858 -5.86723 -3.19539 0.97522 1.47167 1.68697 2.11743 2.34140 2.93380 3.04823 3.34708 3.39719 3.41942 4.05431 4.20294 4.33728 4.37094 4.61473 4.63633 4.70884 4.86524 4.90408 4.91781 5.18471 5.24166 5.25823 5.26740 5.37609 5.42794 5.43194 5.49472 5.52689 5.58008 5.70385 5.79823 5.96748 6.04432 6.07890 6.20485 6.43620 6.44147 6.48982 6.50887 6.70256 6.71967 6.99750 7.15828 7.27116 7.29469 7.48433 7.64654 7.74478 7.85582 8.08767 9.06700 9.66702 10.33763 11.27599 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.023007 B = 0.001966 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.716957 B =14238.496852 C =14753.083120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.111 3.889 3 N -0.254 5.254 4 N -0.278 5.278 5 C -0.004 4.004 6 C -0.187 4.187 7 C -0.039 4.039 8 C 0.590 3.410 9 O -0.543 6.543 10 N -0.706 5.706 11 C 0.173 3.827 12 C -0.135 4.135 13 C -0.102 4.102 14 C -0.112 4.112 15 C -0.078 4.078 16 C -0.106 4.106 17 C -0.082 4.082 18 C 0.175 3.825 19 N -0.601 5.601 20 C -0.227 4.227 21 H 0.084 0.916 22 C -0.006 4.006 23 N -0.922 5.922 24 Si 0.917 3.083 25 H -0.287 1.287 26 H -0.290 1.290 27 H -0.279 1.279 28 C 0.204 3.796 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.117 0.883 34 H 0.187 0.813 35 H 0.162 0.838 36 H 0.407 0.593 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.119 0.881 40 H 0.121 0.879 41 H 0.117 0.883 42 H 0.036 0.964 43 H 0.037 0.963 44 H 0.255 0.745 45 H 0.068 0.932 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.388 -11.828 -17.433 23.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.009 4.009 3 N -0.043 5.043 4 N -0.111 5.111 5 C -0.179 4.179 6 C -0.216 4.216 7 C -0.167 4.167 8 C 0.376 3.624 9 O -0.421 6.421 10 N -0.358 5.358 11 C 0.051 3.949 12 C -0.136 4.136 13 C -0.120 4.120 14 C -0.131 4.131 15 C -0.080 4.080 16 C -0.107 4.107 17 C -0.101 4.101 18 C 0.050 3.950 19 N -0.327 5.327 20 C -0.355 4.355 21 H 0.102 0.898 22 C -0.203 4.203 23 N -0.568 5.568 24 Si 0.747 3.253 25 H -0.214 1.214 26 H -0.216 1.216 27 H -0.205 1.205 28 C 0.080 3.920 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.115 0.885 33 H 0.135 0.865 34 H 0.204 0.796 35 H 0.179 0.821 36 H 0.242 0.758 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.137 0.863 40 H 0.139 0.861 41 H 0.135 0.865 42 H 0.054 0.946 43 H 0.055 0.945 44 H 0.066 0.934 45 H 0.086 0.914 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.001 -13.260 -17.976 25.357 hybrid contribution 1.093 1.568 0.962 2.140 sum -10.908 -11.692 -17.014 23.349 Atomic orbital electron populations 1.22071 0.93395 1.03515 1.03088 1.22207 0.96326 0.76515 1.05807 1.45863 1.44226 1.12318 1.01865 1.73206 1.18759 1.05233 1.13897 1.23592 1.04046 0.95221 0.95072 1.22322 1.06691 0.96830 0.95791 1.21415 1.11109 0.94336 0.89860 1.16921 0.78067 0.84374 0.83072 1.90778 1.45774 1.21628 1.83945 1.45868 1.64111 1.18324 1.07458 1.20161 1.01497 0.94898 0.78377 1.19411 0.93552 0.98880 1.01714 1.20829 0.98930 0.94903 0.97363 1.20505 0.93963 0.99119 0.99483 1.21562 0.93650 0.96679 0.96072 1.20732 0.97408 0.95486 0.97074 1.20304 0.93892 0.97821 0.98099 1.19714 0.90217 0.91478 0.93637 1.43957 1.02876 1.32739 1.53137 1.18983 0.86441 1.04802 1.25238 0.89825 1.24859 0.97100 0.97936 1.00386 1.69926 1.19326 1.23933 1.43649 0.86017 0.81405 0.79760 0.78101 1.21432 1.21618 1.20470 1.19763 0.82066 0.94063 0.96144 0.91594 0.91859 0.90080 0.88539 0.86454 0.79617 0.82065 0.75754 0.90397 0.90534 0.86265 0.86060 0.86489 0.94617 0.94503 0.93435 0.91437 0.92044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.20 10.24 37.16 0.38 -0.82 16 2 C 0.11 0.94 6.58 -4.04 -0.03 0.91 16 3 N -0.25 -2.71 3.35 -57.14 -0.19 -2.90 16 4 N -0.28 -3.05 11.90 30.59 0.36 -2.68 16 5 C 0.00 -0.04 12.03 -17.43 -0.21 -0.24 16 6 C -0.19 -1.70 10.50 -38.99 -0.41 -2.11 16 7 C -0.04 -0.41 6.96 -82.06 -0.57 -0.99 16 8 C 0.59 6.67 7.78 -12.64 -0.10 6.58 16 9 O -0.54 -7.24 14.68 5.25 0.08 -7.16 16 10 N -0.71 -7.01 5.54 -62.65 -0.35 -7.36 16 11 C 0.17 1.83 5.81 -5.19 -0.03 1.80 16 12 C -0.14 -1.68 5.25 -104.65 -0.55 -2.23 16 13 C -0.10 -1.31 9.70 -39.61 -0.38 -1.70 16 14 C -0.11 -1.76 10.05 -39.54 -0.40 -2.15 16 15 C -0.08 -1.50 6.22 -104.57 -0.65 -2.16 16 16 C -0.11 -1.92 6.22 -104.57 -0.65 -2.58 16 17 C -0.08 -1.18 9.70 -39.54 -0.38 -1.56 16 18 C 0.18 3.63 7.25 -5.08 -0.04 3.59 16 19 N -0.60 -15.19 3.41 -175.67 -0.60 -15.79 16 20 C -0.23 -6.18 10.31 -15.06 -0.16 -6.33 16 21 H 0.08 2.18 7.83 -52.49 -0.41 1.76 16 22 C -0.01 -0.17 5.49 -17.43 -0.10 -0.26 16 23 N -0.92 -26.20 10.48 55.49 0.58 -25.62 16 24 Si 0.92 21.45 29.56 -169.99 -5.02 16.43 16 25 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 28 C 0.20 4.87 5.40 -5.08 -0.03 4.84 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.12 1.07 6.21 -51.93 -0.32 0.74 16 34 H 0.19 1.12 8.06 -52.49 -0.42 0.70 16 35 H 0.16 1.08 7.59 -52.49 -0.40 0.68 16 36 H 0.41 3.53 7.50 -40.82 -0.31 3.22 16 37 H 0.08 0.81 8.09 -51.93 -0.42 0.39 16 38 H 0.08 0.81 8.08 -51.93 -0.42 0.39 16 39 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 40 H 0.12 1.73 8.06 -52.49 -0.42 1.30 16 41 H 0.12 1.46 8.06 -52.48 -0.42 1.03 16 42 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 45 H 0.07 1.76 7.36 -51.93 -0.38 1.38 16 46 H 0.06 1.61 7.63 -51.93 -0.40 1.21 16 LS Contribution 385.39 15.07 5.81 5.81 Total: -1.00 -31.92 385.39 -10.04 -41.96 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -6.42 Total: 2.73 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: -4.29 Total: -5.42 kcal Atomic # 7 Polarization: -54.17 SS G_CDS: -0.19 Total: -54.36 kcal Atomic # 8 Polarization: -7.24 SS G_CDS: 0.08 Total: -7.16 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.92 -10.04 -41.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054262391.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.827 kcal (2) G-P(sol) polarization free energy of solvation -31.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds