Wall clock time and date at job start Sat Apr 11 2020 06:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46502 * 109.46559 * 2 1 4 4 C 1.35031 * 124.88280 * 125.00298 * 3 2 1 5 5 C 1.35372 * 107.23047 * 179.70723 * 4 3 2 6 6 C 1.41498 * 105.49695 * 0.26748 * 5 4 3 7 7 C 1.47718 * 126.51330 * 179.97438 * 6 5 4 8 8 O 1.21572 * 119.99767 * 359.97438 * 7 6 5 9 9 N 1.34768 * 119.99914 * 179.97438 * 7 6 5 10 10 C 1.46498 * 120.00130 * 179.97438 * 9 7 6 11 11 C 1.50707 * 109.47321 * 180.02562 * 10 9 7 12 12 C 1.38249 * 120.02221 * 90.00183 * 11 10 9 13 13 C 1.38144 * 119.96007 * 180.02562 * 12 11 10 14 14 C 1.38443 * 120.10357 * 359.97332 * 13 12 11 15 15 C 1.38064 * 119.93789 * 0.02562 * 14 13 12 16 16 C 1.38143 * 120.01150 * 269.72538 * 11 10 9 17 17 C 1.50779 * 108.86409 * 180.02562 * 15 14 13 18 18 N 1.46635 * 107.69830 * 359.97438 * 17 15 14 19 19 C 1.36940 * 126.56180 * 179.97438 * 18 17 15 20 20 H 1.08001 * 119.99776 * 354.39921 * 19 18 17 21 21 C 1.38809 * 120.00026 * 174.40435 * 19 18 17 22 22 N 1.31614 * 120.00372 * 6.81233 * 21 19 18 23 23 Si 1.86804 * 119.99757 * 186.81880 * 21 19 18 24 24 H 1.48498 * 109.47453 * 94.98189 * 23 21 19 25 25 H 1.48507 * 109.46676 * 214.98376 * 23 21 19 26 26 H 1.48501 * 109.47004 * 334.97662 * 23 21 19 27 27 C 1.46634 * 106.87598 * 0.02562 * 18 17 15 28 28 N 1.28464 * 124.88864 * 305.18324 * 3 2 1 29 29 H 1.09003 * 109.46851 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47264 * 299.99535 * 1 2 3 31 31 H 1.08995 * 109.47281 * 60.00065 * 1 2 3 32 32 H 1.08998 * 109.47264 * 240.00465 * 2 1 3 33 33 H 1.08995 * 109.47281 * 119.99935 * 2 1 3 34 34 H 1.08002 * 126.38607 * 359.96994 * 4 3 2 35 35 H 1.07992 * 127.24836 * 180.27836 * 5 4 3 36 36 H 0.97007 * 120.00511 * 0.02562 * 9 7 6 37 37 H 1.09001 * 109.47282 * 300.00062 * 10 9 7 38 38 H 1.08992 * 109.47371 * 60.00460 * 10 9 7 39 39 H 1.07998 * 120.01571 * 359.97438 * 12 11 10 40 40 H 1.08005 * 119.94454 * 179.97438 * 13 12 11 41 41 H 1.07997 * 119.95448 * 359.97438 * 16 11 10 42 42 H 1.08992 * 109.81356 * 119.54944 * 17 15 14 43 43 H 1.09001 * 109.81046 * 240.45497 * 17 15 14 44 44 H 0.96998 * 120.00233 * 180.02562 * 22 21 19 45 45 H 1.08999 * 109.80888 * 240.44921 * 27 18 17 46 46 H 1.09002 * 109.81131 * 119.54426 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.8746 1.8976 0.9073 5 6 3.0876 3.1905 0.5673 6 6 2.3033 3.4113 -0.5895 7 6 2.1919 4.6740 -1.3481 8 8 2.8132 5.6554 -0.9893 9 7 1.4017 4.7378 -2.4379 10 6 1.2908 5.9901 -3.1900 11 6 0.3524 5.7962 -4.3532 12 6 -0.9999 6.0390 -4.1989 13 6 -1.8590 5.8603 -5.2658 14 6 -1.3680 5.4390 -6.4897 15 6 -0.0176 5.1966 -6.6439 16 6 0.8438 5.3813 -5.5757 17 6 0.2396 4.7549 -8.0624 18 7 -1.0469 4.7431 -8.7658 19 6 -1.2577 4.4015 -10.0751 20 1 -0.4175 4.1910 -10.7202 21 6 -2.5511 4.3260 -10.5731 22 7 -3.5663 4.7111 -9.8292 23 14 -2.8510 3.6777 -12.2992 24 1 -3.1696 2.2287 -12.2354 25 1 -3.9896 4.4085 -12.9115 26 1 -1.6321 3.8808 -13.1229 27 6 -2.0644 5.1681 -7.7993 28 7 1.6906 2.2764 -0.8612 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.3119 1.3753 1.7454 35 1 3.7225 3.9032 1.0725 36 1 0.9057 3.9548 -2.7241 37 1 0.9034 6.7727 -2.5376 38 1 2.2741 6.2797 -3.5605 39 1 -1.3844 6.3673 -3.2445 40 1 -2.9154 6.0496 -5.1448 41 1 1.9008 5.1965 -5.6974 42 1 0.9208 5.4529 -8.5490 43 1 0.6710 3.7539 -8.0651 44 1 -4.4702 4.6580 -10.1771 45 1 -2.8027 4.3770 -7.6682 46 1 -2.5533 6.0760 -8.1527 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054285195.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:58 Heat of formation + Delta-G solvation = 101.145772 kcal Electronic energy + Delta-G solvation = -27811.494164 eV Core-core repulsion = 23896.686492 eV Total energy + Delta-G solvation = -3914.807673 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.92031 -39.86462 -39.15104 -36.33135 -34.94121 -34.46562 -32.28030 -31.36103 -30.88406 -30.35996 -29.62460 -27.52612 -26.09658 -25.24112 -24.10925 -22.40972 -21.97156 -21.67407 -20.41048 -20.21784 -19.88791 -18.17308 -17.01343 -16.92591 -16.35678 -15.97605 -15.53374 -15.22358 -14.90611 -14.69162 -14.47243 -14.30254 -14.20866 -13.94652 -13.86902 -13.33193 -13.20105 -12.98993 -12.86963 -12.60208 -12.36268 -11.92690 -11.89771 -11.83642 -11.64628 -11.52774 -11.11191 -11.09016 -10.85450 -10.46483 -10.30058 -10.18785 -10.12323 -9.81448 -9.56281 -9.35868 -9.06761 -8.92490 -8.38576 -8.00390 -6.85192 -5.83417 -3.15636 1.38831 1.60699 1.77875 1.88340 2.11310 3.22814 3.33088 3.36872 3.41795 3.44089 3.94188 4.17683 4.38033 4.40571 4.45296 4.51343 4.63995 4.75460 4.95553 5.02547 5.13300 5.26448 5.28127 5.34817 5.39456 5.41235 5.49521 5.54510 5.60291 5.63813 5.72047 5.89079 6.05214 6.12525 6.14073 6.34053 6.45318 6.52534 6.56178 6.56797 6.79566 6.82882 7.07165 7.32448 7.35861 7.40373 7.54007 7.68828 7.69828 8.12736 8.14086 9.10397 9.70518 10.38309 11.31047 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014607 B = 0.002156 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.451759 B =12986.741073 C =14044.050914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.116 3.884 3 N -0.281 5.281 4 C -0.022 4.022 5 C -0.179 4.179 6 C -0.018 4.018 7 C 0.603 3.397 8 O -0.538 6.538 9 N -0.710 5.710 10 C 0.170 3.830 11 C -0.131 4.131 12 C -0.102 4.102 13 C -0.112 4.112 14 C -0.081 4.081 15 C -0.107 4.107 16 C -0.083 4.083 17 C 0.176 3.824 18 N -0.601 5.601 19 C -0.227 4.227 20 H 0.084 0.916 21 C -0.006 4.006 22 N -0.921 5.921 23 Si 0.916 3.084 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.279 1.279 27 C 0.205 3.795 28 N -0.256 5.256 29 H 0.080 0.920 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.103 0.897 34 H 0.181 0.819 35 H 0.162 0.838 36 H 0.409 0.591 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.119 0.881 40 H 0.121 0.879 41 H 0.117 0.883 42 H 0.036 0.964 43 H 0.037 0.963 44 H 0.255 0.745 45 H 0.066 0.934 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.712 -7.603 23.500 26.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.004 4.004 3 N -0.070 5.070 4 C -0.164 4.164 5 C -0.207 4.207 6 C -0.178 4.178 7 C 0.388 3.612 8 O -0.413 6.413 9 N -0.362 5.362 10 C 0.047 3.953 11 C -0.132 4.132 12 C -0.121 4.121 13 C -0.131 4.131 14 C -0.082 4.082 15 C -0.107 4.107 16 C -0.102 4.102 17 C 0.050 3.950 18 N -0.327 5.327 19 C -0.354 4.354 20 H 0.102 0.898 21 C -0.203 4.203 22 N -0.568 5.568 23 Si 0.746 3.254 24 H -0.215 1.215 25 H -0.216 1.216 26 H -0.205 1.205 27 C 0.081 3.919 28 N -0.092 5.092 29 H 0.099 0.901 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.113 0.887 33 H 0.121 0.879 34 H 0.198 0.802 35 H 0.179 0.821 36 H 0.244 0.756 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.137 0.863 40 H 0.139 0.861 41 H 0.135 0.865 42 H 0.054 0.946 43 H 0.055 0.945 44 H 0.065 0.935 45 H 0.084 0.916 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 9.196 -7.526 22.811 25.721 hybrid contribution 0.067 -0.454 -0.365 0.586 sum 9.262 -7.980 22.446 25.560 Atomic orbital electron populations 1.22088 0.92896 1.03576 1.04107 1.22041 0.96898 0.76615 1.04819 1.45659 1.32237 1.10377 1.18751 1.22884 0.99388 0.95526 0.98626 1.21775 1.04527 0.96135 0.98305 1.21961 1.02817 0.93278 0.99776 1.16899 0.79167 0.85407 0.79752 1.90790 1.46104 1.35816 1.68614 1.46021 1.47160 1.15151 1.27841 1.20148 0.98729 0.85804 0.90590 1.19453 0.94124 1.05289 0.94290 1.20823 0.92524 1.00400 0.98342 1.20490 0.99729 1.01143 0.91727 1.21530 0.95735 0.94395 0.96540 1.20715 0.94484 0.99430 0.96121 1.20308 0.98979 0.99479 0.91392 1.19705 0.90655 0.97858 0.86789 1.43962 1.01039 1.79643 1.08090 1.18985 0.92532 1.39955 0.83946 0.89843 1.24856 0.95371 1.01193 0.98861 1.69936 0.98495 1.51772 1.36579 0.86030 0.77591 0.78573 0.83174 1.21468 1.21641 1.20472 1.19746 0.90628 0.99805 0.81767 1.73487 1.21873 0.98072 1.15780 0.90124 0.91850 0.90505 0.88706 0.87877 0.80167 0.82066 0.75553 0.90611 0.90605 0.86302 0.86141 0.86512 0.94623 0.94550 0.93467 0.91610 0.92068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.83 10.01 37.16 0.37 -0.46 16 2 C 0.12 0.52 7.12 -4.04 -0.03 0.49 16 3 N -0.28 -2.32 3.41 -61.33 -0.21 -2.53 16 4 C -0.02 -0.16 11.40 -17.17 -0.20 -0.36 16 5 C -0.18 -1.80 10.81 -39.36 -0.43 -2.22 16 6 C -0.02 -0.22 7.13 -82.76 -0.59 -0.81 16 7 C 0.60 8.36 7.82 -12.39 -0.10 8.27 16 8 O -0.54 -8.82 16.93 5.30 0.09 -8.73 16 9 N -0.71 -8.98 5.54 -62.47 -0.35 -9.32 16 10 C 0.17 2.15 5.80 -5.19 -0.03 2.12 16 11 C -0.13 -1.86 5.25 -104.65 -0.55 -2.41 16 12 C -0.10 -1.47 9.70 -39.61 -0.38 -1.86 16 13 C -0.11 -1.89 10.05 -39.54 -0.40 -2.29 16 14 C -0.08 -1.64 6.22 -104.57 -0.65 -2.29 16 15 C -0.11 -2.06 6.22 -104.57 -0.65 -2.71 16 16 C -0.08 -1.31 9.70 -39.54 -0.38 -1.69 16 17 C 0.18 3.80 7.25 -5.08 -0.04 3.77 16 18 N -0.60 -15.66 3.41 -175.68 -0.60 -16.26 16 19 C -0.23 -6.30 10.31 -15.06 -0.16 -6.45 16 20 H 0.08 2.22 7.84 -52.49 -0.41 1.81 16 21 C -0.01 -0.17 5.48 -17.43 -0.10 -0.27 16 22 N -0.92 -26.67 10.49 55.49 0.58 -26.09 16 23 Si 0.92 21.79 29.56 -169.99 -5.02 16.76 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 C 0.20 5.06 5.40 -5.08 -0.03 5.03 16 28 N -0.26 -2.88 11.35 33.42 0.38 -2.50 16 29 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.08 0.54 8.08 -51.93 -0.42 0.12 16 32 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.10 0.15 8.04 -51.93 -0.42 -0.27 16 34 H 0.18 0.58 8.06 -52.49 -0.42 0.15 16 35 H 0.16 1.44 8.06 -52.49 -0.42 1.02 16 36 H 0.41 4.99 8.19 -40.82 -0.33 4.65 16 37 H 0.08 0.93 8.09 -51.93 -0.42 0.51 16 38 H 0.08 0.96 8.08 -51.93 -0.42 0.54 16 39 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 40 H 0.12 1.84 8.06 -52.48 -0.42 1.41 16 41 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 42 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.26 7.13 8.31 -40.82 -0.34 6.80 16 45 H 0.07 1.77 7.38 -51.93 -0.38 1.39 16 46 H 0.06 1.65 7.62 -51.93 -0.40 1.25 16 LS Contribution 390.32 15.07 5.88 5.88 Total: -1.00 -33.84 390.32 -10.13 -43.98 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -6.56 Total: 2.96 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: -4.33 Total: -4.15 kcal Atomic # 7 Polarization: -56.51 SS G_CDS: -0.19 Total: -56.70 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: 0.09 Total: -8.73 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.84 -10.13 -43.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054285195.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.123 kcal (2) G-P(sol) polarization free energy of solvation -33.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds