Wall clock time and date at job start Sat Apr 11 2020 06:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.28450 * 124.15979 * 2 1 4 4 C 1.32144 * 111.38943 * 180.02562 * 3 2 1 5 5 C 1.40929 * 135.41466 * 180.02562 * 4 3 2 6 6 C 1.35825 * 119.54169 * 179.97438 * 5 4 3 7 7 C 1.39480 * 121.83977 * 359.97438 * 6 5 4 8 8 C 1.36073 * 121.57027 * 359.97438 * 7 6 5 9 9 C 1.40062 * 119.46859 * 0.02562 * 8 7 6 10 10 C 1.36197 * 124.15668 * 179.75957 * 2 1 3 11 11 C 1.46426 * 126.85634 * 359.90764 * 10 2 1 12 12 O 1.21724 * 120.00093 * 265.57415 * 11 10 2 13 13 N 1.34778 * 119.99746 * 85.57555 * 11 10 2 14 14 C 1.47394 * 135.85552 * 4.78140 * 13 11 10 15 15 C 1.52078 * 87.40908 * 154.38425 * 14 13 11 16 16 C 1.47397 * 135.85243 * 185.13870 * 13 11 10 17 17 C 1.53519 * 117.20854 * 267.27586 * 15 14 13 18 18 C 1.54636 * 102.70192 * 262.93209 * 17 15 14 19 19 N 1.47146 * 107.37915 * 339.38834 * 18 17 15 20 20 C 1.36927 * 125.58191 * 179.06567 * 19 18 17 21 21 H 1.08005 * 120.00122 * 174.82216 * 20 19 18 22 22 C 1.38809 * 119.99980 * 354.82433 * 20 19 18 23 23 N 1.31623 * 120.00267 * 6.99606 * 22 20 19 24 24 Si 1.86801 * 120.00306 * 186.99529 * 22 20 19 25 25 H 1.48503 * 109.47246 * 94.98619 * 24 22 20 26 26 H 1.48497 * 109.47421 * 214.98818 * 24 22 20 27 27 H 1.48503 * 109.47073 * 334.99043 * 24 22 20 28 28 C 1.47759 * 108.83800 * 359.08512 * 19 18 17 29 29 H 1.09000 * 109.47644 * 85.40365 * 1 2 3 30 30 H 1.08999 * 109.47348 * 205.41147 * 1 2 3 31 31 H 1.09007 * 109.46524 * 325.40691 * 1 2 3 32 32 H 1.08005 * 120.23283 * 359.97335 * 5 4 3 33 33 H 1.08001 * 119.07793 * 180.02562 * 6 5 4 34 34 H 1.08001 * 119.21500 * 180.02562 * 7 6 5 35 35 H 1.08001 * 120.26001 * 180.02562 * 8 7 6 36 36 H 1.08995 * 113.54321 * 268.99313 * 14 13 11 37 37 H 1.08996 * 113.53974 * 39.67464 * 14 13 11 38 38 H 1.08996 * 113.54493 * 320.33575 * 16 13 11 39 39 H 1.08997 * 113.53837 * 90.93361 * 16 13 11 40 40 H 1.08995 * 110.76534 * 21.23821 * 17 15 14 41 41 H 1.09002 * 110.75975 * 144.63108 * 17 15 14 42 42 H 1.09000 * 109.86000 * 98.83540 * 18 17 15 43 43 H 1.08994 * 109.86340 * 219.93819 * 18 17 15 44 44 H 0.96992 * 120.00570 * 180.02562 * 23 22 20 45 45 H 1.08993 * 110.40904 * 263.50408 * 28 19 18 46 46 H 1.09003 * 110.40508 * 141.07856 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1862 1.0629 0.0000 4 6 3.4750 0.7708 -0.0006 5 6 4.6725 1.5137 -0.0004 6 6 5.8646 0.8627 -0.0006 7 6 5.9423 -0.5300 -0.0005 8 6 4.8245 -1.3059 0.0004 9 6 3.5631 -0.6971 0.0006 10 6 2.2297 -1.1270 0.0047 11 6 1.7533 -2.5116 0.0124 12 8 1.6336 -3.1082 1.0667 13 7 1.4473 -3.1254 -1.1478 14 6 1.5382 -2.7869 -2.5795 15 6 1.6041 -4.2806 -2.8577 16 6 0.8704 -4.4248 -1.5369 17 6 2.9984 -4.9159 -2.9535 18 6 3.2538 -4.9470 -4.4783 19 7 1.9455 -4.8528 -5.1451 20 6 1.7410 -4.8295 -6.4988 21 1 0.7357 -4.8425 -6.8935 22 6 2.8258 -4.7891 -7.3640 23 7 4.0485 -4.9120 -6.8926 24 14 2.5503 -4.5603 -9.1973 25 1 2.6744 -3.1209 -9.5408 26 1 3.5657 -5.3385 -9.9514 27 1 1.1917 -5.0397 -9.5574 28 6 0.8885 -4.7871 -4.1147 29 1 -0.3634 0.0823 -1.0243 30 1 -0.3634 -0.9282 0.4410 31 1 -0.3632 0.8461 0.5835 32 1 4.6427 2.5934 0.0000 33 1 6.7777 1.4394 0.0000 34 1 6.9129 -1.0037 -0.0003 35 1 4.9094 -2.3826 0.0008 36 1 0.6400 -2.3102 -2.9720 37 1 2.4508 -2.2526 -2.8434 38 1 1.2254 -5.2579 -0.9303 39 1 -0.2149 -4.4070 -1.6361 40 1 3.7406 -4.2967 -2.4498 41 1 2.9921 -5.9252 -2.5420 42 1 3.8781 -4.1013 -4.7665 43 1 3.7430 -5.8815 -4.7528 44 1 4.8065 -4.8834 -7.4970 45 1 0.4667 -5.7766 -3.9392 46 1 0.1078 -4.0881 -4.4152 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073104156.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:26 Heat of formation + Delta-G solvation = 143.418219 kcal Electronic energy + Delta-G solvation = -29709.565176 eV Core-core repulsion = 25796.590574 eV Total energy + Delta-G solvation = -3912.974602 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.59817 -40.70278 -38.34919 -37.78310 -35.76060 -33.01741 -32.37980 -32.02762 -30.16916 -29.29222 -28.66472 -27.67468 -26.15921 -25.93266 -24.02972 -23.31233 -22.46977 -21.79482 -20.35749 -19.23520 -18.44767 -17.74118 -17.53833 -16.88144 -16.71976 -16.39143 -15.98827 -15.42456 -15.03380 -14.67929 -14.39264 -14.25979 -14.01845 -13.87997 -13.51356 -13.41999 -13.27603 -13.09691 -12.56267 -12.38523 -12.04283 -11.96041 -11.91111 -11.83943 -11.81870 -11.09606 -10.96016 -10.76221 -10.62937 -10.42801 -10.37584 -10.24321 -10.15408 -10.00482 -9.86484 -9.70349 -8.77795 -8.77203 -8.62661 -7.82912 -6.89763 -5.77710 -3.10685 0.44071 1.55724 1.80603 2.24956 2.47180 2.78278 3.36771 3.42161 3.44373 3.75159 3.93484 4.04755 4.41079 4.53132 4.61852 4.69679 4.79100 4.82442 4.97780 4.99044 5.03798 5.11271 5.26799 5.33977 5.43894 5.44120 5.55197 5.57811 5.60690 5.61775 5.74756 5.78944 5.93753 6.04564 6.15711 6.26603 6.35540 6.38295 6.44158 6.48093 6.50809 6.57072 6.61672 6.82832 7.49406 7.52279 7.56875 7.76950 7.77236 7.87854 8.19125 9.15563 9.75878 10.41274 11.34187 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012132 B = 0.003274 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.485483 B = 8548.922867 C = 9419.515565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.219 5.219 3 N -0.289 5.289 4 C 0.060 3.940 5 C -0.080 4.080 6 C -0.097 4.097 7 C -0.128 4.128 8 C -0.060 4.060 9 C -0.124 4.124 10 C -0.012 4.012 11 C 0.620 3.380 12 O -0.526 6.526 13 N -0.630 5.630 14 C 0.120 3.880 15 C -0.103 4.103 16 C 0.121 3.879 17 C -0.117 4.117 18 C 0.179 3.821 19 N -0.604 5.604 20 C -0.232 4.232 21 H 0.078 0.922 22 C -0.004 4.004 23 N -0.918 5.918 24 Si 0.909 3.091 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.281 1.281 28 C 0.155 3.845 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.105 0.895 32 H 0.129 0.871 33 H 0.128 0.872 34 H 0.126 0.874 35 H 0.124 0.876 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.061 0.939 41 H 0.065 0.935 42 H 0.049 0.951 43 H 0.043 0.957 44 H 0.253 0.747 45 H 0.028 0.972 46 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.346 9.256 14.519 17.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.002 5.002 3 N -0.125 5.125 4 C -0.085 4.085 5 C -0.101 4.101 6 C -0.119 4.119 7 C -0.147 4.147 8 C -0.080 4.080 9 C -0.133 4.133 10 C -0.148 4.148 11 C 0.406 3.594 12 O -0.402 6.402 13 N -0.365 5.365 14 C -0.003 4.003 15 C -0.105 4.105 16 C -0.001 4.001 17 C -0.156 4.156 18 C 0.054 3.946 19 N -0.331 5.331 20 C -0.360 4.360 21 H 0.096 0.904 22 C -0.201 4.201 23 N -0.565 5.565 24 Si 0.739 3.261 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.206 1.206 28 C 0.028 3.972 29 H 0.114 0.886 30 H 0.116 0.884 31 H 0.124 0.876 32 H 0.147 0.853 33 H 0.146 0.854 34 H 0.144 0.856 35 H 0.142 0.858 36 H 0.106 0.894 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.108 0.892 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.067 0.933 43 H 0.061 0.939 44 H 0.063 0.937 45 H 0.045 0.955 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.184 9.972 15.089 18.564 hybrid contribution 0.337 -0.420 -1.049 1.179 sum -3.847 9.552 14.040 17.411 Atomic orbital electron populations 1.22397 0.72531 1.05925 1.05438 1.45641 1.08114 1.01650 1.44843 1.73410 1.03512 1.10494 1.25134 1.20580 0.91020 0.92258 1.04604 1.19864 0.88522 0.99098 1.02615 1.20629 0.97236 0.94545 0.99512 1.20672 0.98263 0.93674 1.02114 1.20096 0.89700 0.99724 0.98455 1.19347 0.91697 0.93929 1.08309 1.20889 0.91328 0.88553 1.14061 1.16135 0.77605 0.83293 0.82405 1.90878 1.53450 1.65755 1.30089 1.49814 1.60903 1.20076 1.05675 1.22971 1.02707 0.97798 0.76781 1.22181 0.98822 0.94671 0.94831 1.22887 0.98511 0.85222 0.93516 1.22482 0.93100 0.99259 1.00717 1.21236 0.87766 1.01147 0.84440 1.44534 1.00628 1.86896 1.01039 1.19032 0.92875 1.44188 0.79926 0.90378 1.24807 0.95269 1.01897 0.98110 1.69965 0.97353 1.55823 1.33381 0.86147 0.77158 0.77726 0.85023 1.21613 1.21742 1.20624 1.21130 0.91929 0.97459 0.86702 0.88552 0.88408 0.87640 0.85326 0.85428 0.85579 0.85808 0.89428 0.89885 0.89920 0.89234 0.92011 0.91625 0.93319 0.93894 0.93675 0.95474 0.93930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.64 11.12 59.85 0.67 1.31 16 2 N -0.22 -2.88 3.71 -63.75 -0.24 -3.11 16 3 N -0.29 -4.15 11.88 33.20 0.39 -3.76 16 4 C 0.06 0.87 7.52 -83.14 -0.63 0.25 16 5 C -0.08 -0.95 10.09 -39.43 -0.40 -1.35 16 6 C -0.10 -1.02 9.89 -39.98 -0.40 -1.41 16 7 C -0.13 -1.45 9.92 -39.90 -0.40 -1.85 16 8 C -0.06 -0.81 10.06 -39.68 -0.40 -1.21 16 9 C -0.12 -1.88 6.41 -104.94 -0.67 -2.55 16 10 C -0.01 -0.18 6.51 -81.93 -0.53 -0.72 16 11 C 0.62 9.51 7.09 -12.96 -0.09 9.42 16 12 O -0.53 -9.53 17.89 5.17 0.09 -9.44 16 13 N -0.63 -8.77 3.70 -187.35 -0.69 -9.46 16 14 C 0.12 1.69 7.76 -7.32 -0.06 1.64 16 15 C -0.10 -1.58 1.06 -155.22 -0.16 -1.74 16 16 C 0.12 1.54 8.03 -7.47 -0.06 1.48 16 17 C -0.12 -2.04 6.41 -25.60 -0.16 -2.20 16 18 C 0.18 4.08 5.40 -2.83 -0.02 4.06 16 19 N -0.60 -14.33 3.41 -170.54 -0.58 -14.91 16 20 C -0.23 -6.14 10.26 -15.06 -0.15 -6.29 16 21 H 0.08 1.99 7.84 -52.48 -0.41 1.58 16 22 C 0.00 -0.11 5.48 -17.43 -0.10 -0.21 16 23 N -0.92 -26.11 10.35 55.49 0.57 -25.53 16 24 Si 0.91 21.40 29.56 -169.99 -5.02 16.37 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 28 C 0.15 2.80 6.70 -3.22 -0.02 2.77 16 29 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.10 0.76 7.55 -51.93 -0.39 0.37 16 31 H 0.11 0.67 8.14 -51.92 -0.42 0.25 16 32 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 33 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 34 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 35 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 36 H 0.09 1.10 8.06 -51.93 -0.42 0.68 16 37 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 38 H 0.08 1.06 8.13 -51.93 -0.42 0.64 16 39 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.06 1.04 8.07 -51.93 -0.42 0.62 16 41 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.05 1.25 7.30 -51.93 -0.38 0.87 16 43 H 0.04 1.10 7.60 -51.93 -0.39 0.70 16 44 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 45 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.04 0.73 8.00 -51.93 -0.42 0.31 16 LS Contribution 383.48 15.07 5.78 5.78 Total: -1.00 -33.50 383.48 -9.89 -43.39 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -6.62 Total: -0.73 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: -3.58 Total: 1.39 kcal Atomic # 7 Polarization: -56.23 SS G_CDS: -0.54 Total: -56.77 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.09 Total: -9.44 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.50 -9.89 -43.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073104156.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.808 kcal (2) G-P(sol) polarization free energy of solvation -33.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds