Wall clock time and date at job start Sat Apr 11 2020 06:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.28450 * 124.15979 * 2 1 4 4 C 1.32144 * 111.38943 * 180.02562 * 3 2 1 5 5 C 1.40929 * 135.41466 * 180.02562 * 4 3 2 6 6 C 1.35825 * 119.54169 * 179.97438 * 5 4 3 7 7 C 1.39480 * 121.83977 * 359.97438 * 6 5 4 8 8 C 1.36073 * 121.57027 * 359.97438 * 7 6 5 9 9 C 1.40062 * 119.46859 * 0.02562 * 8 7 6 10 10 C 1.36197 * 124.15668 * 179.75957 * 2 1 3 11 11 C 1.46426 * 126.85634 * 359.90764 * 10 2 1 12 12 O 1.21724 * 120.00093 * 265.57415 * 11 10 2 13 13 N 1.34778 * 119.99746 * 85.57555 * 11 10 2 14 14 C 1.47394 * 135.85552 * 4.78140 * 13 11 10 15 15 C 1.52078 * 87.40908 * 154.38425 * 14 13 11 16 16 C 1.47397 * 135.85243 * 185.13870 * 13 11 10 17 17 C 1.53519 * 117.20854 * 267.27586 * 15 14 13 18 18 C 1.54636 * 102.70192 * 262.93209 * 17 15 14 19 19 N 1.47146 * 107.37915 * 339.38834 * 18 17 15 20 20 C 1.36927 * 125.58191 * 179.06567 * 19 18 17 21 21 H 1.08005 * 120.00122 * 174.82216 * 20 19 18 22 22 C 1.38809 * 119.99980 * 354.82433 * 20 19 18 23 23 N 1.31623 * 120.00267 * 6.99606 * 22 20 19 24 24 Si 1.86801 * 120.00306 * 186.99529 * 22 20 19 25 25 H 1.48503 * 109.47246 * 94.98619 * 24 22 20 26 26 H 1.48497 * 109.47421 * 214.98818 * 24 22 20 27 27 H 1.48503 * 109.47073 * 334.99043 * 24 22 20 28 28 C 1.47759 * 108.83800 * 359.08512 * 19 18 17 29 29 H 1.09000 * 109.47644 * 85.40365 * 1 2 3 30 30 H 1.08999 * 109.47348 * 205.41147 * 1 2 3 31 31 H 1.09007 * 109.46524 * 325.40691 * 1 2 3 32 32 H 1.08005 * 120.23283 * 359.97335 * 5 4 3 33 33 H 1.08001 * 119.07793 * 180.02562 * 6 5 4 34 34 H 1.08001 * 119.21500 * 180.02562 * 7 6 5 35 35 H 1.08001 * 120.26001 * 180.02562 * 8 7 6 36 36 H 1.08995 * 113.54321 * 268.99313 * 14 13 11 37 37 H 1.08996 * 113.53974 * 39.67464 * 14 13 11 38 38 H 1.08996 * 113.54493 * 320.33575 * 16 13 11 39 39 H 1.08997 * 113.53837 * 90.93361 * 16 13 11 40 40 H 1.08995 * 110.76534 * 21.23821 * 17 15 14 41 41 H 1.09002 * 110.75975 * 144.63108 * 17 15 14 42 42 H 1.09000 * 109.86000 * 98.83540 * 18 17 15 43 43 H 1.08994 * 109.86340 * 219.93819 * 18 17 15 44 44 H 0.96992 * 120.00570 * 180.02562 * 23 22 20 45 45 H 1.08993 * 110.40904 * 263.50408 * 28 19 18 46 46 H 1.09003 * 110.40508 * 141.07856 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1862 1.0629 0.0000 4 6 3.4750 0.7708 -0.0006 5 6 4.6725 1.5137 -0.0004 6 6 5.8646 0.8627 -0.0006 7 6 5.9423 -0.5300 -0.0005 8 6 4.8245 -1.3059 0.0004 9 6 3.5631 -0.6971 0.0006 10 6 2.2297 -1.1270 0.0047 11 6 1.7533 -2.5116 0.0124 12 8 1.6336 -3.1082 1.0667 13 7 1.4473 -3.1254 -1.1478 14 6 1.5382 -2.7869 -2.5795 15 6 1.6041 -4.2806 -2.8577 16 6 0.8704 -4.4248 -1.5369 17 6 2.9984 -4.9159 -2.9535 18 6 3.2538 -4.9470 -4.4783 19 7 1.9455 -4.8528 -5.1451 20 6 1.7410 -4.8295 -6.4988 21 1 0.7357 -4.8425 -6.8935 22 6 2.8258 -4.7891 -7.3640 23 7 4.0485 -4.9120 -6.8926 24 14 2.5503 -4.5603 -9.1973 25 1 2.6744 -3.1209 -9.5408 26 1 3.5657 -5.3385 -9.9514 27 1 1.1917 -5.0397 -9.5574 28 6 0.8885 -4.7871 -4.1147 29 1 -0.3634 0.0823 -1.0243 30 1 -0.3634 -0.9282 0.4410 31 1 -0.3632 0.8461 0.5835 32 1 4.6427 2.5934 0.0000 33 1 6.7777 1.4394 0.0000 34 1 6.9129 -1.0037 -0.0003 35 1 4.9094 -2.3826 0.0008 36 1 0.6400 -2.3102 -2.9720 37 1 2.4508 -2.2526 -2.8434 38 1 1.2254 -5.2579 -0.9303 39 1 -0.2149 -4.4070 -1.6361 40 1 3.7406 -4.2967 -2.4498 41 1 2.9921 -5.9252 -2.5420 42 1 3.8781 -4.1013 -4.7665 43 1 3.7430 -5.8815 -4.7528 44 1 4.8065 -4.8834 -7.4970 45 1 0.4667 -5.7766 -3.9392 46 1 0.1078 -4.0881 -4.4152 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073104156.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:25 Heat of formation + Delta-G solvation = 123.006072 kcal Electronic energy + Delta-G solvation = -29710.450313 eV Core-core repulsion = 25796.590574 eV Total energy + Delta-G solvation = -3913.859739 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.58080 -41.93228 -39.63383 -38.69458 -37.36169 -34.18171 -33.85232 -33.07419 -31.49605 -30.74295 -29.99549 -28.52369 -27.48932 -27.26868 -25.68833 -24.31888 -23.40455 -22.89128 -22.13814 -20.37130 -19.74019 -18.77438 -18.59381 -18.48254 -17.91140 -17.36654 -17.04422 -16.73136 -16.55380 -16.20066 -15.65334 -15.52110 -15.20171 -15.05720 -14.60596 -14.31997 -14.25945 -14.13125 -13.91010 -13.76843 -13.67828 -13.36360 -12.89661 -12.83846 -12.80046 -12.73327 -12.68034 -12.30778 -12.01185 -12.00784 -11.85353 -11.76641 -11.42113 -11.32733 -11.29812 -11.18345 -10.64871 -9.93793 -9.70065 -8.84779 -8.80905 -7.82302 -5.15819 -0.52118 0.58802 0.80601 1.23362 1.39810 1.49248 1.50135 1.58780 1.75714 2.52367 2.80672 2.96197 3.02158 3.24930 3.42146 3.51923 3.76169 3.79396 3.93675 3.98712 4.09160 4.13147 4.18430 4.19029 4.30306 4.36840 4.41093 4.47235 4.53376 4.57081 4.63382 4.67274 4.79322 4.82057 4.90914 5.01462 5.04054 5.14439 5.19894 5.30337 5.46423 5.51683 5.54470 5.59058 5.67711 5.79925 5.95511 6.22750 6.35382 6.72023 6.76518 7.13575 7.81621 8.45921 9.28752 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012132 B = 0.003274 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.485483 B = 8548.922867 C = 9419.515565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.214 5.214 3 N -0.298 5.298 4 C 0.036 3.964 5 C -0.089 4.089 6 C -0.094 4.094 7 C -0.118 4.118 8 C -0.093 4.093 9 C -0.146 4.146 10 C -0.037 4.037 11 C 0.629 3.371 12 O -0.559 6.559 13 N -0.625 5.625 14 C 0.126 3.874 15 C -0.098 4.098 16 C 0.131 3.869 17 C -0.104 4.104 18 C 0.190 3.810 19 N -0.626 5.626 20 C -0.236 4.236 21 H 0.088 0.912 22 C -0.064 4.064 23 N -0.951 5.951 24 Si 0.971 3.029 25 H -0.290 1.290 26 H -0.300 1.300 27 H -0.265 1.265 28 C 0.153 3.847 29 H 0.116 0.884 30 H 0.103 0.897 31 H 0.125 0.875 32 H 0.151 0.849 33 H 0.165 0.835 34 H 0.151 0.849 35 H 0.118 0.882 36 H 0.114 0.886 37 H 0.062 0.938 38 H 0.087 0.913 39 H 0.125 0.875 40 H 0.064 0.936 41 H 0.079 0.921 42 H 0.010 0.990 43 H 0.003 0.997 44 H 0.245 0.755 45 H 0.041 0.959 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.867 10.341 15.096 18.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N 0.002 4.998 3 N -0.136 5.136 4 C -0.108 4.108 5 C -0.109 4.109 6 C -0.116 4.116 7 C -0.137 4.137 8 C -0.113 4.113 9 C -0.154 4.154 10 C -0.173 4.173 11 C 0.416 3.584 12 O -0.437 6.437 13 N -0.358 5.358 14 C 0.003 3.997 15 C -0.099 4.099 16 C 0.010 3.990 17 C -0.142 4.142 18 C 0.065 3.935 19 N -0.353 5.353 20 C -0.365 4.365 21 H 0.106 0.894 22 C -0.257 4.257 23 N -0.600 5.600 24 Si 0.800 3.200 25 H -0.217 1.217 26 H -0.227 1.227 27 H -0.190 1.190 28 C 0.028 3.972 29 H 0.134 0.866 30 H 0.121 0.879 31 H 0.143 0.857 32 H 0.168 0.832 33 H 0.182 0.818 34 H 0.169 0.831 35 H 0.136 0.864 36 H 0.131 0.869 37 H 0.081 0.919 38 H 0.105 0.895 39 H 0.143 0.857 40 H 0.083 0.917 41 H 0.097 0.903 42 H 0.028 0.972 43 H 0.022 0.978 44 H 0.054 0.946 45 H 0.058 0.942 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.758 11.055 15.672 20.025 hybrid contribution 0.823 -0.741 -1.223 1.650 sum -4.935 10.314 14.449 18.426 Atomic orbital electron populations 1.22792 0.70166 1.07141 1.07157 1.46020 1.09419 1.00810 1.43547 1.73352 1.03739 1.11038 1.25437 1.21055 0.91851 0.92423 1.05455 1.20274 0.88097 1.00294 1.02259 1.21058 0.98266 0.94345 0.97947 1.21084 0.98649 0.94323 0.99686 1.20255 0.90272 0.99902 1.00895 1.19698 0.92365 0.94686 1.08701 1.20850 0.91745 0.88775 1.15944 1.16084 0.76923 0.83357 0.82076 1.90854 1.55076 1.66613 1.31152 1.49732 1.60422 1.20420 1.05232 1.22980 1.03008 0.96811 0.76858 1.21988 0.97191 0.95439 0.95321 1.22981 1.00128 0.84791 0.91130 1.22272 0.94897 1.00530 0.96476 1.20897 0.87225 0.97421 0.87976 1.44824 1.02335 1.86687 1.01404 1.19465 0.93152 1.42354 0.81559 0.89429 1.25594 0.95213 1.02800 1.02133 1.70189 0.97942 1.57688 1.34214 0.85159 0.77354 0.77154 0.80302 1.21725 1.22661 1.18958 1.21314 0.91085 0.98620 0.86149 0.86619 0.87878 0.85684 0.83160 0.81769 0.83092 0.86356 0.86852 0.91944 0.89489 0.85674 0.91719 0.90280 0.97210 0.97843 0.94602 0.94151 0.92179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.97 11.12 127.77 1.42 2.40 16 2 N -0.21 -5.44 3.71 -355.62 -1.32 -6.76 16 3 N -0.30 -8.37 11.88 -48.86 -0.58 -8.95 16 4 C 0.04 1.03 7.52 42.07 0.32 1.34 16 5 C -0.09 -1.98 10.09 22.37 0.23 -1.76 16 6 C -0.09 -1.78 9.89 22.01 0.22 -1.57 16 7 C -0.12 -2.56 9.92 22.07 0.22 -2.34 16 8 C -0.09 -2.57 10.06 22.21 0.22 -2.34 16 9 C -0.15 -4.46 6.41 -20.07 -0.13 -4.59 16 10 C -0.04 -1.09 6.51 41.05 0.27 -0.82 16 11 C 0.63 18.87 7.09 86.37 0.61 19.48 16 12 O -0.56 -20.00 17.89 -4.43 -0.08 -20.08 16 13 N -0.62 -16.29 3.70 -864.87 -3.20 -19.49 16 14 C 0.13 3.34 7.76 83.77 0.65 3.99 16 15 C -0.10 -2.81 1.06 -52.62 -0.06 -2.86 16 16 C 0.13 2.94 8.03 83.67 0.67 3.62 16 17 C -0.10 -3.58 6.41 31.33 0.20 -3.38 16 18 C 0.19 8.98 5.40 86.81 0.47 9.45 16 19 N -0.63 -29.68 3.41 -693.45 -2.36 -32.04 16 20 C -0.24 -12.48 10.26 84.03 0.86 -11.62 16 21 H 0.09 4.35 7.84 -2.91 -0.02 4.33 16 22 C -0.06 -3.55 5.48 84.86 0.46 -3.08 16 23 N -0.95 -56.24 10.35 21.65 0.22 -56.02 16 24 Si 0.97 44.46 29.56 68.60 2.03 46.49 16 25 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 26 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 27 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 28 C 0.15 5.22 6.70 86.22 0.58 5.80 16 29 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.10 1.43 7.55 -2.39 -0.02 1.41 16 31 H 0.12 1.33 8.14 -2.38 -0.02 1.31 16 32 H 0.15 2.57 8.06 -2.91 -0.02 2.55 16 33 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 34 H 0.15 2.40 8.06 -2.91 -0.02 2.37 16 35 H 0.12 3.23 8.06 -2.91 -0.02 3.21 16 36 H 0.11 2.48 8.06 -2.39 -0.02 2.46 16 37 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.09 1.97 8.13 -2.39 -0.02 1.95 16 39 H 0.13 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.06 2.20 8.07 -2.39 -0.02 2.18 16 41 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 42 H 0.01 0.52 7.30 -2.39 -0.02 0.51 16 43 H 0.00 0.18 7.60 -2.39 -0.02 0.16 16 44 H 0.24 14.20 8.31 -92.71 -0.77 13.43 16 45 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 46 H 0.06 1.86 8.00 -2.39 -0.02 1.84 16 Total: -1.00 -75.92 383.48 2.91 -73.01 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: 0.99 Total: 12.13 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: 7.22 Total: 11.71 kcal Atomic # 7 Polarization: -116.02 SS G_CDS: -7.24 Total: -123.26 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: -0.08 Total: -20.08 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -75.92 2.91 -73.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073104156.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.013 kcal (2) G-P(sol) polarization free energy of solvation -75.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds