Wall clock time and date at job start Sat Apr 11 2020 06:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.28380 * 124.37235 * 2 1 4 4 C 1.31575 * 111.96483 * 180.20078 * 3 2 1 5 5 C 1.47395 * 126.82349 * 179.81077 * 4 3 2 6 6 O 1.21606 * 119.99597 * 179.68740 * 5 4 3 7 7 N 1.34777 * 119.99715 * 359.68745 * 5 4 3 8 8 C 1.47849 * 134.35872 * 179.97438 * 7 5 4 9 9 C 1.52565 * 85.65874 * 156.35340 * 8 7 5 10 10 C 1.47842 * 134.36463 * 359.97427 * 7 5 4 11 11 C 1.53916 * 115.92648 * 264.97768 * 9 8 7 12 12 C 1.55157 * 101.43416 * 264.39824 * 11 9 8 13 13 N 1.47540 * 105.00870 * 324.38046 * 12 11 9 14 14 C 1.36938 * 125.66104 * 203.91703 * 13 12 11 15 15 H 1.07992 * 120.00109 * 179.97438 * 14 13 12 16 16 C 1.38818 * 119.99452 * 359.97438 * 14 13 12 17 17 N 1.31613 * 120.00471 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99506 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47124 * 60.00102 * 18 16 14 20 20 H 1.48500 * 109.46879 * 179.97438 * 18 16 14 21 21 H 1.48492 * 109.47554 * 299.99983 * 18 16 14 22 22 C 1.47365 * 108.68318 * 23.91258 * 13 12 11 23 23 C 1.46886 * 106.35494 * 359.55011 * 4 3 2 24 24 C 1.39182 * 135.56442 * 180.25766 * 23 4 3 25 25 C 1.36721 * 119.51362 * 179.97438 * 24 23 4 26 26 C 1.38898 * 120.52078 * 0.02562 * 25 24 23 27 27 C 1.36685 * 120.89448 * 359.97438 * 26 25 24 28 28 C 1.37052 * 124.37100 * 179.69906 * 2 1 3 29 29 H 1.08998 * 109.46593 * 270.30763 * 1 2 3 30 30 H 1.08998 * 109.47152 * 30.30933 * 1 2 3 31 31 H 1.08998 * 109.47264 * 150.31247 * 1 2 3 32 32 H 1.08999 * 113.84012 * 42.17307 * 8 7 5 33 33 H 1.08997 * 113.84608 * 270.53528 * 8 7 5 34 34 H 1.09002 * 113.84480 * 89.46378 * 10 7 5 35 35 H 1.09003 * 113.84456 * 317.82581 * 10 7 5 36 36 H 1.09000 * 111.01279 * 146.36280 * 11 9 8 37 37 H 1.09005 * 111.07982 * 22.46046 * 11 9 8 38 38 H 1.09003 * 110.33390 * 205.49754 * 12 11 9 39 39 H 1.09002 * 110.41826 * 83.30492 * 12 11 9 40 40 H 0.97002 * 120.00335 * 180.02562 * 17 16 14 41 41 H 1.09002 * 109.98231 * 117.31569 * 22 13 12 42 42 H 1.09004 * 109.98723 * 238.57759 * 22 13 12 43 43 H 1.08002 * 120.24855 * 0.02799 * 24 23 4 44 44 H 1.07996 * 119.74281 * 180.02562 * 25 24 23 45 45 H 1.08003 * 119.55262 * 179.97438 * 26 25 24 46 46 H 1.07998 * 120.10708 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1898 1.0596 0.0000 4 6 3.4748 0.7769 -0.0043 5 6 4.5911 1.7394 -0.0095 6 8 5.7393 1.3388 -0.0074 7 7 4.3392 3.0634 -0.0166 8 6 5.1845 4.2765 -0.0227 9 6 3.9753 4.9751 -0.6371 10 6 3.1077 3.8814 -0.0214 11 6 3.9585 5.0644 -2.1735 12 6 4.5551 6.4776 -2.4061 13 7 4.0425 7.2970 -1.2914 14 6 3.9046 8.6594 -1.2996 15 1 3.5175 9.1682 -0.4292 16 6 4.2624 9.3864 -2.4268 17 7 4.7337 8.7662 -3.4877 18 14 4.0749 11.2449 -2.4377 19 1 4.9030 11.8324 -1.3541 20 1 4.5235 11.7799 -3.7483 21 1 2.6497 11.6000 -2.2193 22 6 3.7035 6.4060 -0.1676 23 6 3.5760 -0.6884 0.0036 24 6 4.6165 -1.6128 0.0085 25 6 4.3299 -2.9496 0.0162 26 6 3.0121 -3.3884 0.0187 27 6 1.9756 -2.4974 0.0140 28 6 2.2388 -1.1312 0.0059 29 1 -0.3632 0.0055 1.0277 30 1 -0.3633 0.8872 -0.5186 31 1 -0.3634 -0.8927 -0.5090 32 1 6.0428 4.2120 -0.6914 33 1 5.4436 4.6380 0.9724 34 1 2.7351 4.1227 0.9741 35 1 2.3321 3.5062 -0.6891 36 1 2.9403 5.0015 -2.5576 37 1 4.5900 4.2950 -2.6179 38 1 4.2145 6.8803 -3.3601 39 1 5.6442 6.4398 -2.3789 40 1 4.9840 9.2743 -4.2752 41 1 4.3278 6.6400 0.6947 42 1 2.6511 6.5189 0.0930 43 1 5.6429 -1.2766 0.0070 44 1 5.1344 -3.6700 0.0205 45 1 2.8035 -4.4481 0.0244 46 1 0.9558 -2.8526 0.0156 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073135949.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:29 Heat of formation + Delta-G solvation = 134.948206 kcal Electronic energy + Delta-G solvation = -29035.143352 eV Core-core repulsion = 25121.801463 eV Total energy + Delta-G solvation = -3913.341889 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.66702 -40.38442 -38.07792 -38.01095 -35.55463 -33.82872 -32.16344 -30.82392 -30.45512 -29.59531 -28.68965 -27.47929 -26.03030 -25.60105 -24.00240 -23.46565 -22.47784 -21.80116 -20.30199 -19.28636 -18.27884 -17.67288 -17.41996 -16.71863 -16.57056 -16.06535 -15.74473 -15.49334 -15.34706 -14.79619 -14.39176 -14.35352 -13.98965 -13.75187 -13.66492 -13.21755 -13.16092 -12.93238 -12.43698 -12.23506 -12.20848 -12.12385 -11.92322 -11.66329 -11.43402 -11.19643 -11.00316 -10.93960 -10.74463 -10.43516 -10.19635 -10.13569 -9.98454 -9.81935 -9.76899 -9.50653 -9.00591 -8.63745 -8.53562 -8.17599 -6.82767 -5.63756 -3.05522 0.62796 1.12464 1.77101 2.09426 2.87128 3.25578 3.41515 3.45777 3.47160 3.62317 3.96594 4.16744 4.37393 4.49247 4.66801 4.71597 4.72527 4.75737 4.88920 5.01013 5.08547 5.13507 5.19570 5.26771 5.40355 5.51291 5.60562 5.67739 5.68711 5.72437 5.90441 5.90964 5.95779 6.02802 6.21381 6.24864 6.29252 6.32535 6.46261 6.53951 6.62775 6.64640 6.73259 6.77807 7.53502 7.62157 7.63189 7.80543 7.87257 8.25339 8.37037 9.22999 9.83772 10.48940 11.40111 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.025694 B = 0.002330 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.487503 B =12013.501388 C =12563.653835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.320 5.320 3 N -0.203 5.203 4 C 0.010 3.990 5 C 0.623 3.377 6 O -0.538 6.538 7 N -0.626 5.626 8 C 0.129 3.871 9 C -0.104 4.104 10 C 0.125 3.875 11 C -0.119 4.119 12 C 0.154 3.846 13 N -0.604 5.604 14 C -0.222 4.222 15 H 0.077 0.923 16 C -0.011 4.011 17 N -0.922 5.922 18 Si 0.914 3.086 19 H -0.286 1.286 20 H -0.290 1.290 21 H -0.285 1.285 22 C 0.152 3.848 23 C -0.110 4.110 24 C -0.041 4.041 25 C -0.144 4.144 26 C -0.085 4.085 27 C -0.121 4.121 28 C 0.063 3.937 29 H 0.081 0.919 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.065 0.935 37 H 0.059 0.941 38 H 0.106 0.894 39 H 0.013 0.987 40 H 0.253 0.747 41 H 0.026 0.974 42 H 0.031 0.969 43 H 0.138 0.862 44 H 0.129 0.871 45 H 0.130 0.870 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.613 -23.999 7.570 26.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.113 5.113 3 N -0.032 5.032 4 C -0.161 4.161 5 C 0.411 3.589 6 O -0.414 6.414 7 N -0.360 5.360 8 C 0.008 3.992 9 C -0.106 4.106 10 C 0.002 3.998 11 C -0.157 4.157 12 C 0.030 3.970 13 N -0.330 5.330 14 C -0.351 4.351 15 H 0.095 0.905 16 C -0.207 4.207 17 N -0.571 5.571 18 Si 0.745 3.255 19 H -0.212 1.212 20 H -0.216 1.216 21 H -0.212 1.212 22 C 0.026 3.974 23 C -0.117 4.117 24 C -0.061 4.061 25 C -0.163 4.163 26 C -0.106 4.106 27 C -0.142 4.142 28 C -0.048 4.048 29 H 0.099 0.901 30 H 0.116 0.884 31 H 0.110 0.890 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.124 0.876 39 H 0.031 0.969 40 H 0.063 0.937 41 H 0.044 0.956 42 H 0.048 0.952 43 H 0.156 0.844 44 H 0.147 0.853 45 H 0.148 0.852 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -8.841 -23.315 7.422 26.016 hybrid contribution 0.197 0.265 0.110 0.348 sum -8.644 -23.050 7.532 25.744 Atomic orbital electron populations 1.22092 0.73037 1.05342 1.04178 1.45206 1.07203 1.00937 1.57956 1.72985 1.03901 1.13463 1.12818 1.22729 0.90208 0.92025 1.11089 1.16239 0.86121 0.79852 0.76739 1.90782 1.20704 1.77970 1.51951 1.49962 1.11740 1.03049 1.71291 1.23126 0.95768 0.79381 1.00906 1.22514 0.94768 0.94922 0.98369 1.23128 0.88905 0.86906 1.00838 1.22701 1.01222 1.00622 0.91166 1.21976 0.95017 0.84971 0.95077 1.44578 1.75292 1.02267 1.10874 1.19022 1.36243 0.80609 0.99191 0.90503 1.24788 1.01364 0.98208 0.96317 1.69786 1.49474 1.33400 1.04423 0.86156 0.77733 0.84876 0.76739 1.21232 1.21622 1.21198 1.20981 0.97685 0.86955 0.91815 1.19453 0.93073 0.91821 1.07369 1.20432 0.98937 0.91610 0.95135 1.20837 0.96757 0.95400 1.03331 1.20726 0.92245 0.99354 0.98263 1.19736 1.00044 0.88401 1.06021 1.19177 0.90578 0.90077 1.04982 0.90080 0.88356 0.89001 0.89619 0.89451 0.89746 0.89518 0.91644 0.92216 0.87631 0.96863 0.93674 0.95577 0.95161 0.84370 0.85281 0.85217 0.85655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.55 11.24 59.85 0.67 1.22 16 2 N -0.32 -3.52 3.74 -65.50 -0.24 -3.76 16 3 N -0.20 -2.76 10.29 34.46 0.35 -2.41 16 4 C 0.01 0.15 7.27 -80.75 -0.59 -0.44 16 5 C 0.62 10.71 8.04 -12.53 -0.10 10.61 16 6 O -0.54 -10.45 17.13 5.27 0.09 -10.36 16 7 N -0.63 -10.06 3.62 -186.97 -0.68 -10.74 16 8 C 0.13 2.10 8.08 -3.53 -0.03 2.07 16 9 C -0.10 -1.78 0.98 -154.67 -0.15 -1.93 16 10 C 0.12 1.81 7.21 -3.52 -0.03 1.78 16 11 C -0.12 -2.25 6.42 -25.11 -0.16 -2.41 16 12 C 0.15 3.70 5.90 -2.33 -0.01 3.69 16 13 N -0.60 -15.12 3.41 -170.34 -0.58 -15.70 16 14 C -0.22 -6.10 10.28 -15.06 -0.15 -6.25 16 15 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 16 C -0.01 -0.32 5.49 -17.43 -0.10 -0.41 16 17 N -0.92 -26.76 10.09 55.49 0.56 -26.20 16 18 Si 0.91 21.91 29.55 -169.99 -5.02 16.89 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 22 C 0.15 3.02 6.75 -3.56 -0.02 2.99 16 23 C -0.11 -1.52 6.34 -105.05 -0.67 -2.19 16 24 C -0.04 -0.50 9.87 -39.78 -0.39 -0.89 16 25 C -0.14 -1.30 9.98 -39.89 -0.40 -1.70 16 26 C -0.09 -0.66 9.96 -39.90 -0.40 -1.05 16 27 C -0.12 -1.01 9.94 -39.81 -0.40 -1.41 16 28 C 0.06 0.72 6.85 -84.21 -0.58 0.15 16 29 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.09 0.32 8.09 -51.93 -0.42 -0.10 16 32 H 0.09 1.46 8.12 -51.93 -0.42 1.04 16 33 H 0.09 1.29 8.00 -51.93 -0.42 0.88 16 34 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.09 1.23 7.55 -51.93 -0.39 0.84 16 36 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 37 H 0.06 1.09 8.06 -51.93 -0.42 0.67 16 38 H 0.11 2.87 5.89 -51.93 -0.31 2.56 16 39 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 41 H 0.03 0.51 7.86 -51.93 -0.41 0.10 16 42 H 0.03 0.58 8.09 -51.93 -0.42 0.16 16 43 H 0.14 1.72 7.65 -52.49 -0.40 1.32 16 44 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 45 H 0.13 0.61 8.06 -52.48 -0.42 0.18 16 46 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 LS Contribution 380.08 15.07 5.73 5.73 Total: -1.00 -34.04 380.08 -9.82 -43.87 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -6.53 Total: -1.16 kcal Atomic # 6 Polarization: 7.34 SS G_CDS: -3.50 Total: 3.84 kcal Atomic # 7 Polarization: -58.22 SS G_CDS: -0.59 Total: -58.81 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.09 Total: -10.36 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.04 -9.82 -43.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073135949.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.814 kcal (2) G-P(sol) polarization free energy of solvation -34.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds