Wall clock time and date at job start Sat Apr 11 2020 06:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.28380 * 124.37235 * 2 1 4 4 C 1.31575 * 111.96483 * 180.20078 * 3 2 1 5 5 C 1.47395 * 126.82349 * 179.81077 * 4 3 2 6 6 O 1.21606 * 119.99597 * 179.68740 * 5 4 3 7 7 N 1.34777 * 119.99715 * 359.68745 * 5 4 3 8 8 C 1.47849 * 134.35872 * 179.97438 * 7 5 4 9 9 C 1.52565 * 85.65874 * 156.35340 * 8 7 5 10 10 C 1.47842 * 134.36463 * 359.97427 * 7 5 4 11 11 C 1.53916 * 115.92648 * 264.97768 * 9 8 7 12 12 C 1.55157 * 101.43416 * 264.39824 * 11 9 8 13 13 N 1.47540 * 105.00870 * 324.38046 * 12 11 9 14 14 C 1.36938 * 125.66104 * 203.91703 * 13 12 11 15 15 H 1.07992 * 120.00109 * 179.97438 * 14 13 12 16 16 C 1.38818 * 119.99452 * 359.97438 * 14 13 12 17 17 N 1.31613 * 120.00471 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99506 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47124 * 60.00102 * 18 16 14 20 20 H 1.48500 * 109.46879 * 179.97438 * 18 16 14 21 21 H 1.48492 * 109.47554 * 299.99983 * 18 16 14 22 22 C 1.47365 * 108.68318 * 23.91258 * 13 12 11 23 23 C 1.46886 * 106.35494 * 359.55011 * 4 3 2 24 24 C 1.39182 * 135.56442 * 180.25766 * 23 4 3 25 25 C 1.36721 * 119.51362 * 179.97438 * 24 23 4 26 26 C 1.38898 * 120.52078 * 0.02562 * 25 24 23 27 27 C 1.36685 * 120.89448 * 359.97438 * 26 25 24 28 28 C 1.37052 * 124.37100 * 179.69906 * 2 1 3 29 29 H 1.08998 * 109.46593 * 270.30763 * 1 2 3 30 30 H 1.08998 * 109.47152 * 30.30933 * 1 2 3 31 31 H 1.08998 * 109.47264 * 150.31247 * 1 2 3 32 32 H 1.08999 * 113.84012 * 42.17307 * 8 7 5 33 33 H 1.08997 * 113.84608 * 270.53528 * 8 7 5 34 34 H 1.09002 * 113.84480 * 89.46378 * 10 7 5 35 35 H 1.09003 * 113.84456 * 317.82581 * 10 7 5 36 36 H 1.09000 * 111.01279 * 146.36280 * 11 9 8 37 37 H 1.09005 * 111.07982 * 22.46046 * 11 9 8 38 38 H 1.09003 * 110.33390 * 205.49754 * 12 11 9 39 39 H 1.09002 * 110.41826 * 83.30492 * 12 11 9 40 40 H 0.97002 * 120.00335 * 180.02562 * 17 16 14 41 41 H 1.09002 * 109.98231 * 117.31569 * 22 13 12 42 42 H 1.09004 * 109.98723 * 238.57759 * 22 13 12 43 43 H 1.08002 * 120.24855 * 0.02799 * 24 23 4 44 44 H 1.07996 * 119.74281 * 180.02562 * 25 24 23 45 45 H 1.08003 * 119.55262 * 179.97438 * 26 25 24 46 46 H 1.07998 * 120.10708 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1898 1.0596 0.0000 4 6 3.4748 0.7769 -0.0043 5 6 4.5911 1.7394 -0.0095 6 8 5.7393 1.3388 -0.0074 7 7 4.3392 3.0634 -0.0166 8 6 5.1845 4.2765 -0.0227 9 6 3.9753 4.9751 -0.6371 10 6 3.1077 3.8814 -0.0214 11 6 3.9585 5.0644 -2.1735 12 6 4.5551 6.4776 -2.4061 13 7 4.0425 7.2970 -1.2914 14 6 3.9046 8.6594 -1.2996 15 1 3.5175 9.1682 -0.4292 16 6 4.2624 9.3864 -2.4268 17 7 4.7337 8.7662 -3.4877 18 14 4.0749 11.2449 -2.4377 19 1 4.9030 11.8324 -1.3541 20 1 4.5235 11.7799 -3.7483 21 1 2.6497 11.6000 -2.2193 22 6 3.7035 6.4060 -0.1676 23 6 3.5760 -0.6884 0.0036 24 6 4.6165 -1.6128 0.0085 25 6 4.3299 -2.9496 0.0162 26 6 3.0121 -3.3884 0.0187 27 6 1.9756 -2.4974 0.0140 28 6 2.2388 -1.1312 0.0059 29 1 -0.3632 0.0055 1.0277 30 1 -0.3633 0.8872 -0.5186 31 1 -0.3634 -0.8927 -0.5090 32 1 6.0428 4.2120 -0.6914 33 1 5.4436 4.6380 0.9724 34 1 2.7351 4.1227 0.9741 35 1 2.3321 3.5062 -0.6891 36 1 2.9403 5.0015 -2.5576 37 1 4.5900 4.2950 -2.6179 38 1 4.2145 6.8803 -3.3601 39 1 5.6442 6.4398 -2.3789 40 1 4.9840 9.2743 -4.2752 41 1 4.3278 6.6400 0.6947 42 1 2.6511 6.5189 0.0930 43 1 5.6429 -1.2766 0.0070 44 1 5.1344 -3.6700 0.0205 45 1 2.8035 -4.4481 0.0244 46 1 0.9558 -2.8526 0.0156 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073135949.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:29 Heat of formation + Delta-G solvation = 113.894837 kcal Electronic energy + Delta-G solvation = -29036.056295 eV Core-core repulsion = 25121.801463 eV Total energy + Delta-G solvation = -3914.254832 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.51451 -41.75171 -39.47045 -38.74666 -37.25915 -34.65216 -34.04054 -31.57023 -31.44523 -31.03166 -30.26355 -28.54398 -27.33567 -27.05519 -25.47847 -24.55080 -23.29594 -22.73127 -22.17100 -20.37553 -19.74203 -18.72711 -18.61741 -18.23260 -17.43555 -17.10071 -17.03114 -16.70748 -16.59065 -16.17972 -15.87125 -15.55433 -15.06883 -14.97552 -14.80052 -14.27352 -14.05497 -13.91095 -13.76165 -13.61507 -13.52871 -13.37122 -12.92189 -12.87290 -12.85667 -12.78643 -12.51829 -12.19925 -12.05792 -12.00291 -11.91422 -11.78366 -11.55784 -11.33847 -11.03822 -11.01146 -10.70401 -9.82347 -9.78233 -8.97435 -8.85708 -7.73835 -5.17860 -0.22886 0.35362 0.83125 1.35171 1.49148 1.52318 1.58492 1.70443 2.16375 2.52709 2.79912 3.03293 3.27454 3.40879 3.42468 3.49937 3.65011 3.74358 4.01755 4.06840 4.10928 4.18723 4.32194 4.35339 4.39649 4.43036 4.46575 4.52914 4.60013 4.65276 4.67191 4.72088 4.83142 4.84779 4.89979 5.02393 5.06263 5.17332 5.19993 5.22228 5.46047 5.50383 5.56600 5.62495 5.71068 5.83434 5.97675 6.32405 6.53687 6.68057 7.01942 7.13293 7.81129 8.45757 9.28412 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.025694 B = 0.002330 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.487503 B =12013.501388 C =12563.653835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.309 5.309 3 N -0.203 5.203 4 C -0.034 4.034 5 C 0.619 3.381 6 O -0.576 6.576 7 N -0.628 5.628 8 C 0.127 3.873 9 C -0.096 4.096 10 C 0.142 3.858 11 C -0.102 4.102 12 C 0.160 3.840 13 N -0.626 5.626 14 C -0.234 4.234 15 H 0.086 0.914 16 C -0.071 4.071 17 N -0.952 5.952 18 Si 0.980 3.020 19 H -0.279 1.279 20 H -0.297 1.297 21 H -0.275 1.275 22 C 0.151 3.849 23 C -0.139 4.139 24 C -0.079 4.079 25 C -0.130 4.130 26 C -0.082 4.082 27 C -0.109 4.109 28 C 0.050 3.950 29 H 0.100 0.900 30 H 0.103 0.897 31 H 0.122 0.878 32 H 0.070 0.930 33 H 0.105 0.895 34 H 0.110 0.890 35 H 0.094 0.906 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.072 0.928 39 H -0.016 1.016 40 H 0.246 0.754 41 H 0.035 0.965 42 H 0.046 0.954 43 H 0.116 0.884 44 H 0.153 0.847 45 H 0.171 0.829 46 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.708 -26.504 9.053 30.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.104 5.104 3 N -0.035 5.035 4 C -0.202 4.202 5 C 0.409 3.591 6 O -0.454 6.454 7 N -0.362 5.362 8 C 0.005 3.995 9 C -0.098 4.098 10 C 0.021 3.979 11 C -0.141 4.141 12 C 0.035 3.965 13 N -0.352 5.352 14 C -0.362 4.362 15 H 0.104 0.896 16 C -0.263 4.263 17 N -0.602 5.602 18 Si 0.809 3.191 19 H -0.205 1.205 20 H -0.224 1.224 21 H -0.200 1.200 22 C 0.025 3.975 23 C -0.146 4.146 24 C -0.099 4.099 25 C -0.149 4.149 26 C -0.103 4.103 27 C -0.130 4.130 28 C -0.062 4.062 29 H 0.118 0.882 30 H 0.121 0.879 31 H 0.140 0.860 32 H 0.088 0.912 33 H 0.123 0.877 34 H 0.128 0.872 35 H 0.112 0.888 36 H 0.091 0.909 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.002 0.998 40 H 0.055 0.945 41 H 0.053 0.947 42 H 0.064 0.936 43 H 0.135 0.865 44 H 0.171 0.829 45 H 0.189 0.811 46 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -11.967 -25.831 8.940 29.839 hybrid contribution 1.081 0.904 -0.323 1.446 sum -10.886 -24.927 8.617 28.533 Atomic orbital electron populations 1.22579 0.70053 1.07179 1.05982 1.45710 1.08698 1.00293 1.55666 1.72863 1.03421 1.14758 1.12418 1.22429 0.90363 0.92541 1.14870 1.16566 0.86390 0.80214 0.75978 1.90738 1.22330 1.78606 1.53759 1.49963 1.12189 1.02862 1.71147 1.23149 0.95096 0.79750 1.01460 1.22342 0.96439 0.94298 0.96676 1.23127 0.88131 0.84695 1.01996 1.22463 1.01154 0.97363 0.93095 1.21687 0.93429 0.87652 0.93747 1.44868 1.75283 1.02367 1.12663 1.19447 1.35390 0.82087 0.99325 0.89646 1.25644 1.01848 1.02583 0.96220 1.70054 1.50770 1.34599 1.04803 0.85121 0.78048 0.79701 0.76274 1.20541 1.22361 1.20047 1.21144 0.98474 0.87344 0.90498 1.19737 0.94995 0.91406 1.08506 1.20450 0.97924 0.93137 0.98377 1.21209 0.98669 0.94313 1.00753 1.21227 0.91128 1.01370 0.96546 1.20264 1.02289 0.86804 1.03667 1.19515 0.89531 0.91369 1.05763 0.88200 0.87867 0.85976 0.91171 0.87711 0.87237 0.88764 0.90852 0.91810 0.91046 0.99806 0.94479 0.94730 0.93629 0.86544 0.82914 0.81138 0.81712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.64 11.24 127.77 1.44 2.08 16 2 N -0.31 -6.08 3.74 -361.13 -1.35 -7.43 16 3 N -0.20 -5.32 10.29 -44.87 -0.46 -5.78 16 4 C -0.03 -1.08 7.27 43.86 0.32 -0.76 16 5 C 0.62 22.14 8.04 86.65 0.70 22.84 16 6 O -0.58 -23.85 17.13 -4.05 -0.07 -23.92 16 7 N -0.63 -20.29 3.62 -863.70 -3.12 -23.41 16 8 C 0.13 4.16 8.08 85.98 0.69 4.86 16 9 C -0.10 -3.23 0.98 -52.07 -0.05 -3.28 16 10 C 0.14 3.91 7.21 85.98 0.62 4.53 16 11 C -0.10 -3.95 6.42 31.64 0.20 -3.75 16 12 C 0.16 8.02 5.90 86.92 0.51 8.53 16 13 N -0.63 -31.78 3.41 -692.84 -2.36 -34.14 16 14 C -0.23 -12.92 10.28 84.03 0.86 -12.05 16 15 H 0.09 4.45 7.83 -2.91 -0.02 4.43 16 16 C -0.07 -4.02 5.49 84.86 0.47 -3.55 16 17 N -0.95 -57.38 10.09 21.65 0.22 -57.16 16 18 Si 0.98 45.65 29.55 68.60 2.03 47.67 16 19 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 20 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 21 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 22 C 0.15 5.85 6.75 86.22 0.58 6.43 16 23 C -0.14 -3.88 6.34 -20.14 -0.13 -4.01 16 24 C -0.08 -1.96 9.87 22.14 0.22 -1.74 16 25 C -0.13 -2.11 9.98 22.07 0.22 -1.89 16 26 C -0.08 -0.93 9.96 22.06 0.22 -0.71 16 27 C -0.11 -1.38 9.94 22.12 0.22 -1.16 16 28 C 0.05 1.03 6.85 39.18 0.27 1.30 16 29 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.12 0.25 8.09 -2.39 -0.02 0.23 16 32 H 0.07 2.51 8.12 -2.39 -0.02 2.49 16 33 H 0.10 3.06 8.00 -2.39 -0.02 3.04 16 34 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 35 H 0.09 2.50 7.55 -2.39 -0.02 2.48 16 36 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 37 H 0.06 2.40 8.06 -2.38 -0.02 2.38 16 38 H 0.07 4.09 5.89 -2.39 -0.01 4.08 16 39 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 40 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 41 H 0.03 1.30 7.86 -2.39 -0.02 1.29 16 42 H 0.05 1.66 8.09 -2.39 -0.02 1.64 16 43 H 0.12 3.25 7.65 -2.91 -0.02 3.23 16 44 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 45 H 0.17 0.57 8.06 -2.91 -0.02 0.55 16 46 H 0.17 0.74 8.06 -2.91 -0.02 0.72 16 Total: -1.00 -79.11 380.08 3.23 -75.88 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: 0.99 Total: 10.62 kcal Atomic # 6 Polarization: 10.31 SS G_CDS: 7.36 Total: 17.67 kcal Atomic # 7 Polarization: -120.85 SS G_CDS: -7.08 Total: -127.93 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: -0.07 Total: -23.92 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.67 kcal Total: -79.11 3.23 -75.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073135949.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.776 kcal (2) G-P(sol) polarization free energy of solvation -79.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds