Wall clock time and date at job start Sat Apr 11 2020 06:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36121 * 126.31111 * 2 1 4 4 N 1.30086 * 110.04215 * 180.02562 * 3 2 1 5 5 C 1.35853 * 109.53771 * 0.02562 * 4 3 2 6 6 C 1.39722 * 133.51051 * 180.31936 * 5 4 3 7 7 C 1.37836 * 120.10775 * 180.15507 * 6 5 4 8 8 C 1.38329 * 120.72732 * 359.48961 * 7 6 5 9 9 C 1.39396 * 120.28179 * 0.25726 * 8 7 6 10 10 C 1.47525 * 120.24886 * 180.02562 * 9 8 7 11 11 O 1.21596 * 120.00131 * 130.27317 * 10 9 8 12 12 N 1.34775 * 120.00312 * 310.28056 * 10 9 8 13 13 C 1.47400 * 125.58636 * 4.97811 * 12 10 9 14 14 C 1.54855 * 104.81045 * 204.61376 * 13 12 10 15 15 C 1.55122 * 101.78025 * 322.81587 * 14 13 12 16 16 H 1.08991 * 113.46430 * 159.23980 * 15 14 13 17 17 C 1.54041 * 108.26005 * 286.09303 * 15 14 13 18 18 N 1.46706 * 106.83247 * 135.80105 * 17 15 14 19 19 C 1.36929 * 125.32371 * 161.81817 * 18 17 15 20 20 H 1.08002 * 120.00139 * 0.02562 * 19 18 17 21 21 C 1.38813 * 120.00307 * 180.02562 * 19 18 17 22 22 N 1.31622 * 119.99862 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00448 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47075 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47403 * 119.99723 * 23 21 19 26 26 H 1.48504 * 109.46718 * 240.00130 * 23 21 19 27 27 C 1.46633 * 109.35270 * 341.82319 * 18 17 15 28 28 C 1.46733 * 125.59277 * 184.68041 * 12 10 9 29 29 H 1.08995 * 111.32649 * 56.11898 * 28 12 10 30 30 C 1.37516 * 126.30981 * 180.02562 * 2 1 3 31 31 H 1.08998 * 109.46531 * 272.62142 * 1 2 3 32 32 H 1.08995 * 109.47292 * 32.62212 * 1 2 3 33 33 H 1.08997 * 109.46962 * 152.62688 * 1 2 3 34 34 H 1.08000 * 124.97960 * 0.03502 * 3 2 1 35 35 H 1.08004 * 119.94416 * 359.91949 * 6 5 4 36 36 H 1.07999 * 119.63516 * 179.76568 * 7 6 5 37 37 H 1.07991 * 119.85646 * 180.27916 * 8 7 6 38 38 H 1.09003 * 110.37341 * 323.44752 * 13 12 10 39 39 H 1.08999 * 110.37242 * 85.78257 * 13 12 10 40 40 H 1.08997 * 110.96781 * 80.94079 * 14 13 12 41 41 H 1.09002 * 110.96564 * 204.65574 * 14 13 12 42 42 H 1.08999 * 109.99338 * 255.14954 * 17 15 14 43 43 H 1.09009 * 109.98789 * 16.46279 * 17 15 14 44 44 H 0.96995 * 120.00030 * 180.02562 * 22 21 19 45 45 H 1.09004 * 109.75662 * 120.92803 * 27 18 17 46 46 H 1.09002 * 109.75413 * 241.62505 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2711 1.0969 0.0000 4 7 3.5199 0.7324 -0.0005 5 6 3.5973 -0.6239 -0.0015 6 6 4.6638 -1.5265 0.0033 7 6 4.4213 -2.8833 -0.0026 8 6 3.1264 -3.3699 -0.0027 9 6 2.0450 -2.4903 -0.0022 10 6 0.6644 -3.0101 -0.0017 11 8 -0.1442 -2.5872 0.8021 12 7 0.2991 -3.9536 -0.8920 13 6 1.1983 -4.6254 -1.8475 14 6 0.2750 -5.0899 -3.0006 15 6 -1.0055 -5.5087 -2.2317 16 1 -1.8989 -5.5303 -2.8558 17 6 -0.7247 -6.8445 -1.5177 18 7 -1.2689 -6.7234 -0.1607 19 6 -1.5473 -7.7702 0.6769 20 1 -1.3663 -8.7844 0.3525 21 6 -2.0623 -7.5281 1.9430 22 7 -2.2834 -6.2922 2.3382 23 14 -2.4414 -8.9561 3.0860 24 1 -2.1069 -10.2346 2.4087 25 1 -1.6340 -8.8260 4.3255 26 1 -3.8855 -8.9430 3.4322 27 6 -1.4681 -5.3062 0.1583 28 6 -1.0576 -4.4850 -1.0651 29 1 -1.7725 -3.6880 -1.2690 30 6 2.2793 -1.1081 -0.0005 31 1 -0.3632 0.0470 1.0266 32 1 -0.3633 0.8655 -0.5540 33 1 -0.3633 -0.9126 -0.4725 34 1 1.9247 2.1198 0.0005 35 1 5.6799 -1.1604 0.0077 36 1 5.2514 -3.5742 -0.0027 37 1 2.9526 -4.4358 -0.0028 38 1 1.9474 -3.9263 -2.2194 39 1 1.6790 -5.4832 -1.3773 40 1 0.0667 -4.2700 -3.6879 41 1 0.7084 -5.9389 -3.5293 42 1 -1.2183 -7.6603 -2.0458 43 1 0.3495 -7.0247 -1.4736 44 1 -2.6429 -6.1230 3.2231 45 1 -2.5175 -5.1249 0.3911 46 1 -0.8485 -5.0299 1.0114 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075967040.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:33 Heat of formation + Delta-G solvation = 90.490579 kcal Electronic energy + Delta-G solvation = -30592.826968 eV Core-core repulsion = 26677.557251 eV Total energy + Delta-G solvation = -3915.269716 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.27983 -40.26258 -38.05887 -37.07889 -34.81801 -34.11128 -32.29014 -30.93386 -30.72816 -29.56899 -28.66284 -27.04716 -26.40217 -24.73104 -24.13444 -22.63558 -22.24776 -21.49876 -20.44835 -19.60963 -18.63906 -17.58472 -17.03980 -16.84823 -16.55642 -16.02548 -15.81680 -15.30541 -15.04518 -14.53993 -14.44153 -13.86281 -13.78447 -13.76495 -13.35572 -13.25802 -12.98291 -12.85333 -12.56909 -12.16686 -12.05831 -11.87703 -11.86099 -11.61368 -11.42889 -11.09925 -11.03403 -10.75672 -10.53484 -10.39333 -10.32581 -10.26061 -10.15020 -9.88446 -9.70914 -9.44591 -8.59045 -8.46582 -8.26315 -8.10547 -6.81402 -5.67841 -3.03846 0.66820 1.42717 2.52171 2.59416 3.05917 3.25064 3.40596 3.45414 3.48658 3.78857 4.14418 4.40986 4.49263 4.59392 4.71913 4.74562 4.92541 4.97424 5.10299 5.19692 5.22777 5.32058 5.38002 5.45993 5.48322 5.59445 5.60900 5.64489 5.71890 5.73596 5.83953 5.98230 6.01131 6.17519 6.20000 6.29780 6.34593 6.40270 6.44510 6.52208 6.60728 6.70989 6.83181 7.01691 7.53099 7.65466 7.73419 7.85178 7.91180 8.28989 8.44381 9.23585 9.84746 10.47715 11.42039 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014682 B = 0.003542 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.582487 B = 7903.345257 C = 8223.942811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.484 5.484 3 C 0.256 3.744 4 N -0.497 5.497 5 C 0.037 3.963 6 C -0.048 4.048 7 C -0.134 4.134 8 C -0.067 4.067 9 C -0.109 4.109 10 C 0.569 3.431 11 O -0.524 6.524 12 N -0.594 5.594 13 C 0.099 3.901 14 C -0.124 4.124 15 C -0.110 4.110 16 H 0.098 0.902 17 C 0.142 3.858 18 N -0.603 5.603 19 C -0.234 4.234 20 H 0.078 0.922 21 C -0.006 4.006 22 N -0.915 5.915 23 Si 0.910 3.090 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.290 1.290 27 C 0.176 3.824 28 C 0.116 3.884 29 H 0.076 0.924 30 C 0.088 3.912 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.214 0.786 35 H 0.131 0.869 36 H 0.135 0.865 37 H 0.137 0.863 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.083 0.917 42 H 0.035 0.965 43 H 0.018 0.982 44 H 0.252 0.748 45 H 0.052 0.948 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.807 11.425 -11.421 18.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.172 5.172 3 C -0.030 4.030 4 N -0.216 5.216 5 C -0.081 4.081 6 C -0.068 4.068 7 C -0.154 4.154 8 C -0.087 4.087 9 C -0.115 4.115 10 C 0.357 3.643 11 O -0.402 6.402 12 N -0.327 5.327 13 C -0.024 4.024 14 C -0.163 4.163 15 C -0.130 4.130 16 H 0.117 0.883 17 C 0.016 3.984 18 N -0.329 5.329 19 C -0.362 4.362 20 H 0.096 0.904 21 C -0.202 4.202 22 N -0.562 5.562 23 Si 0.741 3.259 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.217 1.217 27 C 0.050 3.950 28 C 0.013 3.987 29 H 0.094 0.906 30 C -0.024 4.024 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.110 0.890 34 H 0.230 0.770 35 H 0.149 0.851 36 H 0.153 0.847 37 H 0.155 0.845 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.102 0.898 42 H 0.053 0.947 43 H 0.036 0.964 44 H 0.063 0.937 45 H 0.070 0.930 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.836 12.218 -10.710 18.993 hybrid contribution -1.024 -1.210 0.783 1.768 sum 8.812 11.008 -9.927 17.244 Atomic orbital electron populations 1.22213 0.74998 1.04471 1.04526 1.45238 1.07981 1.05193 1.58830 1.25348 0.85184 0.93440 0.98977 1.70488 1.18288 1.10556 1.22260 1.18987 0.91740 0.90342 1.07075 1.20375 0.97358 0.91394 0.97649 1.20820 0.96659 0.94709 1.03210 1.21201 0.91239 0.99445 0.96847 1.18806 0.94144 0.89768 1.08749 1.17754 0.87071 0.79075 0.80400 1.90839 1.52897 1.59477 1.36960 1.48335 1.10537 1.38069 1.35781 1.22433 0.93306 0.96967 0.89709 1.22762 0.95816 1.01155 0.96545 1.23158 0.97786 0.96595 0.95473 0.88349 1.21305 0.96370 0.93677 0.87094 1.44230 1.75209 1.02501 1.10981 1.19045 1.36620 0.86280 0.94249 0.90388 1.24834 1.01283 0.96529 0.97594 1.69998 1.49804 1.17073 1.19282 0.86077 0.77678 0.81262 0.80918 1.20504 1.21773 1.21740 1.21137 1.00374 0.81870 0.91590 1.22531 0.82518 0.95532 0.98164 0.90556 1.18566 0.91279 0.88068 1.04490 0.89833 0.90099 0.88984 0.76958 0.85072 0.84681 0.84548 0.90886 0.90858 0.91148 0.89811 0.94719 0.96405 0.93724 0.92998 0.92545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.93 9.73 59.85 0.58 1.51 16 2 N -0.48 -6.42 3.19 -122.94 -0.39 -6.81 16 3 C 0.26 2.91 12.50 -89.73 -1.12 1.79 16 4 N -0.50 -6.95 11.28 -12.05 -0.14 -7.09 16 5 C 0.04 0.53 7.22 -84.71 -0.61 -0.08 16 6 C -0.05 -0.59 10.09 -39.17 -0.40 -0.98 16 7 C -0.13 -1.50 9.99 -39.70 -0.40 -1.90 16 8 C -0.07 -0.90 8.15 -39.12 -0.32 -1.22 16 9 C -0.11 -1.72 5.16 -104.95 -0.54 -2.27 16 10 C 0.57 10.45 5.77 -12.47 -0.07 10.38 16 11 O -0.52 -11.34 14.05 5.28 0.07 -11.26 16 12 N -0.59 -10.17 2.99 -163.94 -0.49 -10.66 16 13 C 0.10 1.32 4.98 -2.57 -0.01 1.31 16 14 C -0.12 -1.49 6.35 -24.63 -0.16 -1.64 16 15 C -0.11 -1.74 4.35 -87.73 -0.38 -2.12 16 16 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 17 C 0.14 2.76 6.45 -3.39 -0.02 2.74 16 18 N -0.60 -15.21 3.38 -172.35 -0.58 -15.80 16 19 C -0.23 -6.51 10.25 -15.06 -0.15 -6.67 16 20 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 21 C -0.01 -0.16 5.48 -17.43 -0.10 -0.25 16 22 N -0.91 -27.70 10.24 55.49 0.57 -27.13 16 23 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 26 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 27 C 0.18 4.36 4.87 -4.00 -0.02 4.34 16 28 C 0.12 2.18 3.58 -66.61 -0.24 1.94 16 29 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 30 C 0.09 1.35 6.76 -83.76 -0.57 0.78 16 31 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.09 1.30 5.54 -51.93 -0.29 1.01 16 34 H 0.21 1.34 8.06 -52.49 -0.42 0.92 16 35 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 36 H 0.14 1.10 8.06 -52.49 -0.42 0.67 16 37 H 0.14 1.76 6.82 -52.49 -0.36 1.40 16 38 H 0.07 0.85 7.05 -51.93 -0.37 0.48 16 39 H 0.07 1.02 6.64 -51.93 -0.34 0.68 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.08 0.85 8.08 -51.93 -0.42 0.43 16 42 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.02 0.35 6.52 -51.92 -0.34 0.01 16 44 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 45 H 0.05 1.46 7.32 -51.93 -0.38 1.08 16 46 H 0.06 1.64 6.52 -51.93 -0.34 1.30 16 LS Contribution 361.34 15.07 5.45 5.45 Total: -1.00 -35.88 361.34 -11.24 -47.12 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -6.18 Total: 1.16 kcal Atomic # 6 Polarization: 12.18 SS G_CDS: -4.52 Total: 7.66 kcal Atomic # 7 Polarization: -66.45 SS G_CDS: -1.03 Total: -67.48 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.07 Total: -11.26 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.88 -11.24 -47.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075967040.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.608 kcal (2) G-P(sol) polarization free energy of solvation -35.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds