Wall clock time and date at job start Sat Apr 11 2020 06:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36121 * 126.31111 * 2 1 4 4 N 1.30086 * 110.04215 * 180.02562 * 3 2 1 5 5 C 1.35853 * 109.53771 * 0.02562 * 4 3 2 6 6 C 1.39722 * 133.51051 * 180.31936 * 5 4 3 7 7 C 1.37836 * 120.10775 * 180.15507 * 6 5 4 8 8 C 1.38329 * 120.72732 * 359.48961 * 7 6 5 9 9 C 1.39396 * 120.28179 * 0.25726 * 8 7 6 10 10 C 1.47525 * 120.24886 * 180.02562 * 9 8 7 11 11 O 1.21596 * 120.00131 * 130.27317 * 10 9 8 12 12 N 1.34775 * 120.00312 * 310.28056 * 10 9 8 13 13 C 1.47400 * 125.58636 * 4.97811 * 12 10 9 14 14 C 1.54855 * 104.81045 * 204.61376 * 13 12 10 15 15 C 1.55122 * 101.78025 * 322.81587 * 14 13 12 16 16 H 1.08991 * 113.46430 * 159.23980 * 15 14 13 17 17 C 1.54041 * 108.26005 * 286.09303 * 15 14 13 18 18 N 1.46706 * 106.83247 * 135.80105 * 17 15 14 19 19 C 1.36929 * 125.32371 * 161.81817 * 18 17 15 20 20 H 1.08002 * 120.00139 * 0.02562 * 19 18 17 21 21 C 1.38813 * 120.00307 * 180.02562 * 19 18 17 22 22 N 1.31622 * 119.99862 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00448 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47075 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47403 * 119.99723 * 23 21 19 26 26 H 1.48504 * 109.46718 * 240.00130 * 23 21 19 27 27 C 1.46633 * 109.35270 * 341.82319 * 18 17 15 28 28 C 1.46733 * 125.59277 * 184.68041 * 12 10 9 29 29 H 1.08995 * 111.32649 * 56.11898 * 28 12 10 30 30 C 1.37516 * 126.30981 * 180.02562 * 2 1 3 31 31 H 1.08998 * 109.46531 * 272.62142 * 1 2 3 32 32 H 1.08995 * 109.47292 * 32.62212 * 1 2 3 33 33 H 1.08997 * 109.46962 * 152.62688 * 1 2 3 34 34 H 1.08000 * 124.97960 * 0.03502 * 3 2 1 35 35 H 1.08004 * 119.94416 * 359.91949 * 6 5 4 36 36 H 1.07999 * 119.63516 * 179.76568 * 7 6 5 37 37 H 1.07991 * 119.85646 * 180.27916 * 8 7 6 38 38 H 1.09003 * 110.37341 * 323.44752 * 13 12 10 39 39 H 1.08999 * 110.37242 * 85.78257 * 13 12 10 40 40 H 1.08997 * 110.96781 * 80.94079 * 14 13 12 41 41 H 1.09002 * 110.96564 * 204.65574 * 14 13 12 42 42 H 1.08999 * 109.99338 * 255.14954 * 17 15 14 43 43 H 1.09009 * 109.98789 * 16.46279 * 17 15 14 44 44 H 0.96995 * 120.00030 * 180.02562 * 22 21 19 45 45 H 1.09004 * 109.75662 * 120.92803 * 27 18 17 46 46 H 1.09002 * 109.75413 * 241.62505 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2711 1.0969 0.0000 4 7 3.5199 0.7324 -0.0005 5 6 3.5973 -0.6239 -0.0015 6 6 4.6638 -1.5265 0.0033 7 6 4.4213 -2.8833 -0.0026 8 6 3.1264 -3.3699 -0.0027 9 6 2.0450 -2.4903 -0.0022 10 6 0.6644 -3.0101 -0.0017 11 8 -0.1442 -2.5872 0.8021 12 7 0.2991 -3.9536 -0.8920 13 6 1.1983 -4.6254 -1.8475 14 6 0.2750 -5.0899 -3.0006 15 6 -1.0055 -5.5087 -2.2317 16 1 -1.8989 -5.5303 -2.8558 17 6 -0.7247 -6.8445 -1.5177 18 7 -1.2689 -6.7234 -0.1607 19 6 -1.5473 -7.7702 0.6769 20 1 -1.3663 -8.7844 0.3525 21 6 -2.0623 -7.5281 1.9430 22 7 -2.2834 -6.2922 2.3382 23 14 -2.4414 -8.9561 3.0860 24 1 -2.1069 -10.2346 2.4087 25 1 -1.6340 -8.8260 4.3255 26 1 -3.8855 -8.9430 3.4322 27 6 -1.4681 -5.3062 0.1583 28 6 -1.0576 -4.4850 -1.0651 29 1 -1.7725 -3.6880 -1.2690 30 6 2.2793 -1.1081 -0.0005 31 1 -0.3632 0.0470 1.0266 32 1 -0.3633 0.8655 -0.5540 33 1 -0.3633 -0.9126 -0.4725 34 1 1.9247 2.1198 0.0005 35 1 5.6799 -1.1604 0.0077 36 1 5.2514 -3.5742 -0.0027 37 1 2.9526 -4.4358 -0.0028 38 1 1.9474 -3.9263 -2.2194 39 1 1.6790 -5.4832 -1.3773 40 1 0.0667 -4.2700 -3.6879 41 1 0.7084 -5.9389 -3.5293 42 1 -1.2183 -7.6603 -2.0458 43 1 0.3495 -7.0247 -1.4736 44 1 -2.6429 -6.1230 3.2231 45 1 -2.5175 -5.1249 0.3911 46 1 -0.8485 -5.0299 1.0114 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075967040.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:33 Heat of formation + Delta-G solvation = 67.729503 kcal Electronic energy + Delta-G solvation = -30593.813962 eV Core-core repulsion = 26677.557251 eV Total energy + Delta-G solvation = -3916.256711 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.26771 -41.64491 -39.46639 -38.15145 -36.54783 -35.12035 -33.99674 -32.53289 -31.86368 -30.69841 -30.17352 -28.17184 -27.80257 -26.61778 -25.28362 -23.75442 -23.29316 -22.85360 -21.97770 -20.93068 -19.95653 -18.98733 -18.50901 -18.04908 -17.86876 -17.17788 -16.89587 -16.81952 -16.34229 -16.01419 -15.81354 -15.55301 -14.95836 -14.71603 -14.69818 -14.56116 -14.26330 -14.16293 -13.97460 -13.51379 -13.43339 -13.08067 -13.00842 -12.90580 -12.85667 -12.71542 -12.59429 -12.43310 -12.08492 -11.87648 -11.85416 -11.63002 -11.45061 -11.44060 -11.37346 -10.83447 -10.69596 -9.68757 -9.44580 -9.14776 -8.90840 -7.85525 -5.23616 -0.35213 0.42438 1.41416 1.43001 1.44041 1.53612 1.66276 1.84736 1.96534 2.46667 2.76298 3.20488 3.31565 3.34316 3.55162 3.58608 3.76793 3.79013 3.82822 3.95744 4.00735 4.22162 4.29930 4.30785 4.32785 4.40151 4.43484 4.51856 4.56526 4.67242 4.70408 4.73411 4.83622 4.91848 5.06107 5.10362 5.15157 5.24160 5.27232 5.36927 5.39461 5.43874 5.44335 5.61920 5.76251 5.79230 6.12064 6.17625 6.50500 6.77222 7.04825 7.08529 7.77974 8.39327 9.22959 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014682 B = 0.003542 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.582487 B = 7903.345257 C = 8223.942811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.493 5.493 3 C 0.269 3.731 4 N -0.522 5.522 5 C 0.020 3.980 6 C -0.046 4.046 7 C -0.121 4.121 8 C -0.068 4.068 9 C -0.133 4.133 10 C 0.564 3.436 11 O -0.573 6.573 12 N -0.595 5.595 13 C 0.093 3.907 14 C -0.106 4.106 15 C -0.097 4.097 16 H 0.120 0.880 17 C 0.134 3.866 18 N -0.624 5.624 19 C -0.239 4.239 20 H 0.089 0.911 21 C -0.071 4.071 22 N -0.953 5.953 23 Si 0.977 3.023 24 H -0.257 1.257 25 H -0.298 1.298 26 H -0.293 1.293 27 C 0.196 3.804 28 C 0.120 3.880 29 H 0.076 0.924 30 C 0.060 3.940 31 H 0.067 0.933 32 H 0.125 0.875 33 H 0.062 0.938 34 H 0.261 0.739 35 H 0.157 0.843 36 H 0.173 0.827 37 H 0.138 0.862 38 H 0.097 0.903 39 H 0.068 0.932 40 H 0.096 0.904 41 H 0.115 0.885 42 H 0.046 0.954 43 H 0.032 0.968 44 H 0.242 0.758 45 H 0.001 0.999 46 H 0.002 0.998 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.134 11.309 -14.252 21.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.181 5.181 3 C -0.016 4.016 4 N -0.241 5.241 5 C -0.098 4.098 6 C -0.065 4.065 7 C -0.141 4.141 8 C -0.088 4.088 9 C -0.139 4.139 10 C 0.354 3.646 11 O -0.454 6.454 12 N -0.326 5.326 13 C -0.028 4.028 14 C -0.143 4.143 15 C -0.116 4.116 16 H 0.138 0.862 17 C 0.010 3.990 18 N -0.350 5.350 19 C -0.368 4.368 20 H 0.107 0.893 21 C -0.263 4.263 22 N -0.602 5.602 23 Si 0.806 3.194 24 H -0.181 1.181 25 H -0.225 1.225 26 H -0.220 1.220 27 C 0.070 3.930 28 C 0.016 3.984 29 H 0.094 0.906 30 C -0.051 4.051 31 H 0.085 0.915 32 H 0.143 0.857 33 H 0.081 0.919 34 H 0.277 0.723 35 H 0.175 0.825 36 H 0.191 0.809 37 H 0.156 0.844 38 H 0.115 0.885 39 H 0.086 0.914 40 H 0.114 0.886 41 H 0.133 0.867 42 H 0.064 0.936 43 H 0.050 0.950 44 H 0.051 0.949 45 H 0.019 0.981 46 H 0.020 0.980 Dipole moment (debyes) X Y Z Total from point charges 12.205 12.062 -13.618 21.906 hybrid contribution -1.708 -1.154 1.667 2.651 sum 10.497 10.907 -11.951 19.287 Atomic orbital electron populations 1.22162 0.74576 1.04939 1.03904 1.45449 1.08386 1.05317 1.58954 1.26304 0.84347 0.94640 0.96300 1.70508 1.19576 1.10238 1.23827 1.19427 0.91995 0.91017 1.07380 1.20788 0.98054 0.91459 0.96234 1.21168 0.96538 0.95045 1.01379 1.21354 0.91741 0.99212 0.96456 1.18728 0.92950 0.90634 1.11566 1.18301 0.87903 0.78757 0.79672 1.90799 1.54576 1.61123 1.38909 1.48390 1.10382 1.37710 1.36147 1.22698 0.93623 0.97073 0.89410 1.22798 0.92653 1.03095 0.95792 1.23156 1.01016 0.92857 0.94582 0.86233 1.21599 0.96687 0.96216 0.84508 1.44547 1.75254 1.02004 1.13230 1.19526 1.35060 0.87539 0.94677 0.89274 1.25733 1.02147 0.98891 0.99566 1.70296 1.51465 1.19434 1.18977 0.85016 0.76845 0.79093 0.78456 1.18130 1.22504 1.22038 1.20641 0.96376 0.83160 0.92838 1.22253 0.83917 0.95522 0.96739 0.90579 1.18835 0.92367 0.88395 1.05544 0.91451 0.85679 0.91874 0.72346 0.82528 0.80922 0.84435 0.88455 0.91368 0.88579 0.86656 0.93623 0.95035 0.94917 0.98054 0.97989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.05 9.73 127.77 1.24 3.29 16 2 N -0.49 -12.94 3.19 -542.87 -1.73 -14.67 16 3 C 0.27 5.65 12.50 180.04 2.25 7.90 16 4 N -0.52 -13.81 11.28 -192.02 -2.17 -15.98 16 5 C 0.02 0.55 7.22 39.41 0.28 0.83 16 6 C -0.05 -1.01 10.09 22.53 0.23 -0.79 16 7 C -0.12 -2.41 9.99 22.20 0.22 -2.19 16 8 C -0.07 -1.76 8.15 22.57 0.18 -1.58 16 9 C -0.13 -4.29 5.16 -20.08 -0.10 -4.39 16 10 C 0.56 21.83 5.77 86.69 0.50 22.33 16 11 O -0.57 -27.05 14.05 -4.02 -0.06 -27.11 16 12 N -0.59 -20.70 2.99 -790.84 -2.37 -23.06 16 13 C 0.09 2.31 4.98 86.84 0.43 2.74 16 14 C -0.11 -2.09 6.35 31.95 0.20 -1.88 16 15 C -0.10 -2.85 4.35 -8.92 -0.04 -2.89 16 16 H 0.12 3.07 8.14 -2.39 -0.02 3.05 16 17 C 0.13 5.04 6.45 86.69 0.56 5.60 16 18 N -0.62 -32.34 3.38 -699.19 -2.36 -34.70 16 19 C -0.24 -13.60 10.25 84.04 0.86 -12.74 16 20 H 0.09 4.75 7.83 -2.91 -0.02 4.72 16 21 C -0.07 -4.20 5.48 84.86 0.47 -3.73 16 22 N -0.95 -61.62 10.24 21.65 0.22 -61.39 16 23 Si 0.98 47.45 29.55 68.60 2.03 49.48 16 24 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 25 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 26 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 27 C 0.20 10.40 4.87 86.34 0.42 10.83 16 28 C 0.12 4.65 3.58 45.72 0.16 4.81 16 29 H 0.08 2.91 8.14 -2.39 -0.02 2.89 16 30 C 0.06 1.86 6.76 39.26 0.27 2.13 16 31 H 0.07 1.79 8.14 -2.39 -0.02 1.78 16 32 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.06 1.90 5.54 -2.39 -0.01 1.89 16 34 H 0.26 2.42 8.06 -2.91 -0.02 2.40 16 35 H 0.16 2.58 8.06 -2.91 -0.02 2.56 16 36 H 0.17 2.09 8.06 -2.91 -0.02 2.06 16 37 H 0.14 3.46 6.82 -2.92 -0.02 3.44 16 38 H 0.10 1.97 7.05 -2.39 -0.02 1.96 16 39 H 0.07 1.76 6.64 -2.39 -0.02 1.75 16 40 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.12 1.68 8.08 -2.39 -0.02 1.66 16 42 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.03 1.13 6.52 -2.38 -0.02 1.11 16 44 H 0.24 15.38 8.31 -92.71 -0.77 14.61 16 45 H 0.00 0.08 7.32 -2.38 -0.02 0.06 16 46 H 0.00 0.12 6.52 -2.39 -0.02 0.10 16 Total: -1.00 -87.18 361.34 2.71 -84.46 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: 1.01 Total: 12.70 kcal Atomic # 6 Polarization: 22.12 SS G_CDS: 8.14 Total: 30.26 kcal Atomic # 7 Polarization: -141.40 SS G_CDS: -8.41 Total: -149.80 kcal Atomic # 8 Polarization: -27.05 SS G_CDS: -0.06 Total: -27.11 kcal Atomic # 14 Polarization: 47.45 SS G_CDS: 2.03 Total: 49.48 kcal Total: -87.18 2.71 -84.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075967040.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.193 kcal (2) G-P(sol) polarization free energy of solvation -87.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds