Wall clock time and date at job start Sat Apr 11 2020 06:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.28447 * 125.19029 * 2 1 4 4 C 1.30862 * 110.92549 * 180.26411 * 3 2 1 5 5 C 1.39667 * 107.86385 * 359.97438 * 4 3 2 6 6 C 1.36595 * 125.19006 * 180.29922 * 2 1 3 7 7 C 1.47159 * 126.88626 * 359.76056 * 6 2 1 8 8 O 1.21630 * 119.99951 * 6.46160 * 7 6 2 9 9 N 1.34774 * 120.00422 * 186.46647 * 7 6 2 10 10 C 1.48117 * 127.03530 * 185.50844 * 9 7 6 11 11 C 1.54596 * 103.42167 * 219.27973 * 10 9 7 12 12 H 1.09002 * 110.72893 * 81.24418 * 11 10 9 13 13 C 1.50700 * 110.83370 * 204.44633 * 11 10 9 14 14 C 1.38236 * 120.00185 * 53.29042 * 13 11 10 15 15 C 1.38237 * 119.99859 * 179.80803 * 14 13 11 16 16 C 1.38234 * 120.00191 * 0.42597 * 15 14 13 17 17 C 1.38241 * 119.99868 * 359.80418 * 16 15 14 18 18 C 1.38236 * 120.00098 * 0.02562 * 17 16 15 19 19 C 1.54616 * 102.91223 * 322.86868 * 11 10 9 20 20 H 1.09002 * 110.32494 * 262.80464 * 19 11 10 21 21 N 1.46504 * 110.32563 * 140.59088 * 19 11 10 22 22 C 1.36933 * 119.99871 * 157.92396 * 21 19 11 23 23 H 1.08005 * 120.00335 * 0.02562 * 22 21 19 24 24 C 1.38818 * 119.99733 * 179.97438 * 22 21 19 25 25 N 1.31608 * 120.00242 * 359.97438 * 24 22 21 26 26 Si 1.86809 * 119.99662 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47001 * 60.00180 * 26 24 22 28 28 H 1.48498 * 109.46785 * 179.97438 * 26 24 22 29 29 H 1.48496 * 109.47002 * 299.99967 * 26 24 22 30 30 C 1.47484 * 127.03360 * 5.81592 * 9 7 6 31 31 H 1.08998 * 109.47268 * 264.52850 * 1 2 3 32 32 H 1.08998 * 109.47065 * 24.52879 * 1 2 3 33 33 H 1.08996 * 109.46748 * 144.52443 * 1 2 3 34 34 H 1.07999 * 126.06501 * 179.97438 * 4 3 2 35 35 H 1.08002 * 127.32016 * 179.97438 * 5 4 3 36 36 H 1.08995 * 110.66293 * 337.76520 * 10 9 7 37 37 H 1.08999 * 110.66364 * 100.88501 * 10 9 7 38 38 H 1.07997 * 119.99470 * 359.97438 * 14 13 11 39 39 H 1.08002 * 119.99414 * 180.20254 * 15 14 13 40 40 H 1.08000 * 120.00275 * 179.78942 * 16 15 14 41 41 H 1.07995 * 119.99801 * 179.97438 * 17 16 15 42 42 H 1.07999 * 119.99788 * 179.97438 * 18 17 16 43 43 H 0.97000 * 119.99707 * 337.92320 * 21 19 11 44 44 H 0.96998 * 120.00369 * 179.97438 * 25 24 22 45 45 H 1.08999 * 109.91503 * 273.88381 * 30 9 7 46 46 H 1.09005 * 109.90844 * 35.16396 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2053 1.0497 0.0000 4 6 3.4735 0.7273 -0.0056 5 6 3.5612 -0.6666 -0.0091 6 6 2.2522 -1.1163 -0.0058 7 6 1.7994 -2.5165 -0.0082 8 8 0.6159 -2.7727 -0.1234 9 7 2.6958 -3.5150 0.1174 10 6 2.4307 -4.9691 0.0221 11 6 3.3277 -5.5706 1.1283 12 1 2.8480 -5.4845 2.1033 13 6 3.6611 -7.0086 0.8251 14 6 4.2116 -7.3477 -0.3968 15 6 4.5212 -8.6662 -0.6734 16 6 4.2721 -9.6469 0.2685 17 6 3.7172 -9.3085 1.4885 18 6 3.4109 -7.9895 1.7665 19 6 4.5960 -4.6888 1.0623 20 1 5.3660 -5.1771 0.4650 21 7 5.0953 -4.4136 2.4118 22 6 6.4048 -4.0592 2.5983 23 1 7.0694 -3.9820 1.7504 24 6 6.8778 -3.7979 3.8770 25 7 6.0676 -3.8904 4.9100 26 14 8.6640 -3.3137 4.1312 27 1 8.9498 -2.0645 3.3808 28 1 8.9151 -3.0901 5.5776 29 1 9.5467 -4.4009 3.6373 30 6 4.1404 -3.3835 0.3839 31 1 -0.3634 -0.0980 1.0230 32 1 -0.3633 0.9349 -0.4266 33 1 -0.3633 -0.8369 -0.5964 34 1 4.3048 1.4167 -0.0073 35 1 4.4595 -1.2662 -0.0143 36 1 1.3806 -5.1825 0.2212 37 1 2.7229 -5.3501 -0.9564 38 1 4.4023 -6.5820 -1.1342 39 1 4.9543 -8.9306 -1.6268 40 1 4.5108 -10.6775 0.0511 41 1 3.5222 -10.0747 2.2242 42 1 2.9770 -7.7252 2.7195 43 1 4.4983 -4.4825 3.1732 44 1 6.3982 -3.7083 5.8035 45 1 4.6797 -3.2442 -0.5530 46 1 4.3198 -2.5378 1.0479 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001081097031.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:57 Heat of formation + Delta-G solvation = 85.045074 kcal Electronic energy + Delta-G solvation = -29559.379453 eV Core-core repulsion = 25643.873602 eV Total energy + Delta-G solvation = -3915.505851 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.54824 -41.28945 -39.95432 -38.52123 -35.86564 -34.52988 -33.87667 -32.69756 -31.98845 -31.69005 -29.60579 -28.87887 -28.05236 -26.25971 -25.09850 -23.74866 -23.21785 -22.44494 -22.35499 -21.07173 -20.54650 -19.13733 -18.36183 -17.92086 -17.59553 -17.28209 -16.83897 -16.48200 -16.29943 -15.92379 -15.75049 -15.27256 -15.17871 -14.97461 -14.90783 -14.47293 -14.32967 -14.06008 -13.81431 -13.79399 -13.61879 -13.36471 -13.31229 -13.20530 -12.78948 -12.56635 -12.54044 -12.21497 -11.97832 -11.88334 -11.76903 -11.71069 -11.59206 -11.22312 -10.94448 -10.31854 -10.02926 -9.84518 -9.69598 -9.52232 -8.94511 -7.89776 -5.18917 0.15711 0.53331 0.60724 1.28409 1.52772 1.54126 1.59634 1.59864 2.01197 2.08910 2.59908 2.93009 3.27635 3.40406 3.58802 3.64853 3.77026 3.86911 4.09782 4.13294 4.18224 4.23497 4.26328 4.28895 4.35720 4.38519 4.40030 4.55194 4.60542 4.61056 4.68989 4.72281 4.79888 4.82340 4.90695 4.99183 5.05225 5.20471 5.27196 5.37428 5.49255 5.58740 5.67649 5.69888 5.71437 5.82088 6.22178 6.28730 6.33203 6.83432 7.02578 7.37700 8.09147 8.32556 9.33227 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007328 B = 0.004653 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3819.796440 B = 6015.964621 C = 9057.189812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.268 5.268 3 N -0.293 5.293 4 C -0.008 4.008 5 C -0.188 4.188 6 C -0.056 4.056 7 C 0.606 3.394 8 O -0.575 6.575 9 N -0.597 5.597 10 C 0.125 3.875 11 C -0.062 4.062 12 H 0.068 0.932 13 C -0.070 4.070 14 C -0.122 4.122 15 C -0.121 4.121 16 C -0.131 4.131 17 C -0.128 4.128 18 C -0.131 4.131 19 C 0.177 3.823 20 H 0.079 0.921 21 N -0.723 5.723 22 C -0.234 4.234 23 H 0.085 0.915 24 C -0.070 4.070 25 N -0.970 5.970 26 Si 0.964 3.036 27 H -0.274 1.274 28 H -0.304 1.304 29 H -0.279 1.279 30 C 0.070 3.930 31 H 0.086 0.914 32 H 0.117 0.883 33 H 0.102 0.898 34 H 0.216 0.784 35 H 0.180 0.820 36 H 0.080 0.920 37 H 0.103 0.897 38 H 0.137 0.863 39 H 0.147 0.853 40 H 0.143 0.857 41 H 0.134 0.866 42 H 0.110 0.890 43 H 0.371 0.629 44 H 0.248 0.752 45 H 0.093 0.907 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.519 -2.980 -14.607 16.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.057 5.057 3 N -0.127 5.127 4 C -0.183 4.183 5 C -0.217 4.217 6 C -0.184 4.184 7 C 0.395 3.605 8 O -0.456 6.456 9 N -0.328 5.328 10 C 0.004 3.996 11 C -0.082 4.082 12 H 0.087 0.913 13 C -0.070 4.070 14 C -0.140 4.140 15 C -0.139 4.139 16 C -0.149 4.149 17 C -0.146 4.146 18 C -0.149 4.149 19 C 0.067 3.933 20 H 0.097 0.903 21 N -0.361 5.361 22 C -0.366 4.366 23 H 0.103 0.897 24 C -0.262 4.262 25 N -0.620 5.620 26 Si 0.794 3.206 27 H -0.200 1.200 28 H -0.231 1.231 29 H -0.205 1.205 30 C -0.055 4.055 31 H 0.105 0.895 32 H 0.135 0.865 33 H 0.120 0.880 34 H 0.233 0.767 35 H 0.197 0.803 36 H 0.099 0.901 37 H 0.121 0.879 38 H 0.155 0.845 39 H 0.164 0.836 40 H 0.161 0.839 41 H 0.151 0.849 42 H 0.128 0.872 43 H 0.203 0.797 44 H 0.057 0.943 45 H 0.111 0.889 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.906 -2.090 -14.699 16.821 hybrid contribution 1.176 -0.256 1.345 1.805 sum -6.730 -2.345 -13.354 15.136 Atomic orbital electron populations 1.22461 0.71410 1.06514 1.05204 1.45859 1.08700 1.01404 1.49721 1.73161 1.05127 1.13839 1.20546 1.24142 0.93785 0.95437 1.04938 1.23026 0.96255 0.96246 1.06168 1.21347 0.92364 0.89382 1.15345 1.16582 0.84372 0.83013 0.76578 1.90724 1.16503 1.84687 1.53705 1.48368 1.09641 1.06334 1.68482 1.22550 1.00268 0.77601 0.99230 1.21332 0.96283 0.91905 0.98704 0.91328 1.19543 0.99268 0.93232 0.94989 1.21197 0.99030 0.97470 0.96272 1.21437 0.99479 0.92532 1.00416 1.21454 0.99143 1.00627 0.93628 1.21354 0.99299 0.95885 0.98029 1.21195 1.01049 0.93765 0.98930 1.21393 0.93568 0.91403 0.86971 0.90302 1.42601 1.08895 1.81794 1.02857 1.19587 0.87720 1.36577 0.92700 0.89683 1.25460 1.01351 1.03689 0.95699 1.69806 1.36145 1.57707 0.98351 0.85346 0.80847 0.78518 0.75881 1.19976 1.23132 1.20513 1.23670 0.78759 1.01986 1.01040 0.89543 0.86486 0.87953 0.76730 0.80317 0.90103 0.87873 0.84475 0.83568 0.83887 0.84850 0.87185 0.79723 0.94327 0.88938 0.90323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.87 10.74 127.77 1.37 3.24 16 2 N -0.27 -7.91 3.75 -356.02 -1.33 -9.25 16 3 N -0.29 -8.59 11.90 -57.14 -0.68 -9.27 16 4 C -0.01 -0.21 12.03 85.18 1.02 0.81 16 5 C -0.19 -5.42 9.34 22.66 0.21 -5.21 16 6 C -0.06 -1.78 6.90 40.79 0.28 -1.50 16 7 C 0.61 20.05 7.86 86.59 0.68 20.73 16 8 O -0.57 -20.63 14.98 -4.13 -0.06 -20.69 16 9 N -0.60 -18.02 3.29 -814.27 -2.68 -20.70 16 10 C 0.13 3.36 6.47 86.61 0.56 3.92 16 11 C -0.06 -1.89 2.98 -10.45 -0.03 -1.92 16 12 H 0.07 2.41 7.54 -2.39 -0.02 2.39 16 13 C -0.07 -1.96 4.93 -19.86 -0.10 -2.05 16 14 C -0.12 -2.85 8.19 22.27 0.18 -2.66 16 15 C -0.12 -2.47 10.05 22.27 0.22 -2.25 16 16 C -0.13 -2.73 10.05 22.27 0.22 -2.50 16 17 C -0.13 -3.09 10.05 22.27 0.22 -2.87 16 18 C -0.13 -3.77 9.68 22.27 0.22 -3.56 16 19 C 0.18 6.03 3.13 45.88 0.14 6.17 16 20 H 0.08 2.60 7.15 -2.39 -0.02 2.59 16 21 N -0.72 -33.00 5.07 -318.73 -1.62 -34.62 16 22 C -0.23 -11.80 9.97 84.04 0.84 -10.97 16 23 H 0.09 3.99 7.83 -2.91 -0.02 3.97 16 24 C -0.07 -3.78 5.50 84.87 0.47 -3.31 16 25 N -0.97 -57.45 13.06 21.65 0.28 -57.17 16 26 Si 0.96 43.98 29.55 68.60 2.03 46.01 16 27 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 28 H -0.30 -14.42 7.11 99.48 0.71 -13.72 16 29 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 30 C 0.07 2.14 5.03 86.53 0.44 2.57 16 31 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.10 2.40 6.50 -2.39 -0.02 2.38 16 34 H 0.22 4.12 8.06 -2.91 -0.02 4.10 16 35 H 0.18 4.76 5.10 -2.91 -0.01 4.75 16 36 H 0.08 2.26 7.81 -2.39 -0.02 2.24 16 37 H 0.10 2.25 6.71 -2.39 -0.02 2.23 16 38 H 0.14 2.66 7.25 -2.91 -0.02 2.64 16 39 H 0.15 2.13 8.06 -2.91 -0.02 2.10 16 40 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 41 H 0.13 2.68 8.06 -2.91 -0.02 2.66 16 42 H 0.11 3.27 7.98 -2.91 -0.02 3.25 16 43 H 0.37 19.07 7.54 -92.71 -0.70 18.37 16 44 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 45 H 0.09 2.28 7.87 -2.39 -0.02 2.27 16 46 H 0.08 2.77 5.66 -2.38 -0.01 2.76 16 Total: -1.00 -68.34 377.58 3.21 -65.14 By element: Atomic # 1 Polarization: 41.59 SS G_CDS: 0.32 Total: 41.91 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: 6.95 Total: -1.35 kcal Atomic # 7 Polarization: -124.98 SS G_CDS: -6.03 Total: -131.01 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -0.06 Total: -20.69 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -68.34 3.21 -65.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081097031.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.181 kcal (2) G-P(sol) polarization free energy of solvation -68.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds