Wall clock time and date at job start Sat Apr 11 2020 06:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.35847 * 126.13851 * 2 1 4 4 N 1.30166 * 109.00565 * 179.73918 * 3 2 1 5 5 C 1.35760 * 108.86921 * 0.38512 * 4 3 2 6 6 C 1.47318 * 126.23864 * 179.88585 * 5 4 3 7 7 O 1.21632 * 120.00317 * 179.68774 * 6 5 4 8 8 N 1.34771 * 120.00289 * 359.68487 * 6 5 4 9 9 C 1.47021 * 125.65446 * 180.02562 * 8 6 5 10 10 C 1.54327 * 107.27699 * 178.90708 * 9 8 6 11 11 H 1.08994 * 110.87132 * 96.23731 * 10 9 8 12 12 C 1.50700 * 110.72205 * 219.44568 * 10 9 8 13 13 C 1.38233 * 119.99910 * 53.24084 * 12 10 9 14 14 C 1.38242 * 119.99783 * 179.80781 * 13 12 10 15 15 C 1.38241 * 119.99729 * 0.40502 * 14 13 12 16 16 C 1.38236 * 120.00029 * 359.85448 * 15 14 13 17 17 C 1.38234 * 120.00117 * 359.95282 * 16 15 14 18 18 C 1.55164 * 102.93862 * 337.80831 * 10 9 8 19 19 H 1.09005 * 110.99936 * 277.38862 * 18 10 9 20 20 N 1.46494 * 111.00019 * 153.57834 * 18 10 9 21 21 C 1.36945 * 119.99612 * 158.18009 * 20 18 10 22 22 H 1.07999 * 120.00077 * 359.97438 * 21 20 18 23 23 C 1.38812 * 119.99637 * 179.97438 * 21 20 18 24 24 N 1.31624 * 119.99539 * 180.02562 * 23 21 20 25 25 Si 1.86803 * 120.00216 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.46712 * 90.00052 * 25 23 21 27 27 H 1.48499 * 109.46916 * 209.99467 * 25 23 21 28 28 H 1.48492 * 109.46909 * 330.00070 * 25 23 21 29 29 C 1.47468 * 125.62634 * 359.92375 * 8 6 5 30 30 C 1.35381 * 126.13376 * 179.97438 * 2 1 3 31 31 H 1.08992 * 109.47323 * 270.02168 * 1 2 3 32 32 H 1.09005 * 109.47144 * 30.02711 * 1 2 3 33 33 H 1.09006 * 109.47115 * 150.02402 * 1 2 3 34 34 H 1.08006 * 125.49626 * 359.97438 * 3 2 1 35 35 H 1.09001 * 109.88450 * 59.48690 * 9 8 6 36 36 H 1.09000 * 110.01173 * 298.40042 * 9 8 6 37 37 H 1.07994 * 120.00091 * 0.02562 * 13 12 10 38 38 H 1.07994 * 120.00205 * 180.23673 * 14 13 12 39 39 H 1.07998 * 119.99918 * 179.82753 * 15 14 13 40 40 H 1.07997 * 119.99733 * 179.97438 * 16 15 14 41 41 H 1.08001 * 120.00379 * 179.97438 * 17 16 15 42 42 H 0.96995 * 120.00290 * 338.44900 * 20 18 10 43 43 H 0.97005 * 119.99727 * 180.02562 * 24 23 21 44 44 H 1.08995 * 110.35047 * 85.32154 * 29 8 6 45 45 H 1.09004 * 110.40962 * 322.98180 * 29 8 6 46 46 H 1.08003 * 126.56752 * 0.04242 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2661 1.0971 0.0000 4 7 3.5100 0.7136 0.0056 5 6 3.5511 -0.6433 0.0008 6 6 4.7652 -1.4778 0.0021 7 8 4.6698 -2.6903 0.0031 8 7 5.9817 -0.8977 0.0023 9 6 7.2694 -1.6071 0.0031 10 6 8.3818 -0.5377 -0.0251 11 1 8.7473 -0.3310 0.9807 12 6 9.5126 -0.9682 -0.9234 13 6 9.2536 -1.3473 -2.2273 14 6 10.2915 -1.7383 -3.0525 15 6 11.5872 -1.7583 -2.5712 16 6 11.8455 -1.3844 -1.2657 17 6 10.8082 -0.9895 -0.4417 18 6 7.6567 0.7025 -0.6113 19 1 7.6192 0.6550 -1.6996 20 7 8.2943 1.9434 -0.1643 21 6 8.1235 3.0977 -0.8811 22 1 7.5190 3.0931 -1.7761 23 6 8.7272 4.2736 -0.4573 24 7 8.5626 5.3831 -1.1460 25 14 9.7722 4.2816 1.0911 26 1 11.1821 3.9770 0.7383 27 1 9.7000 5.6202 1.7300 28 1 9.2652 3.2541 2.0357 29 6 6.2411 0.5540 -0.0004 30 6 2.2633 -1.0934 0.0005 31 1 -0.3633 0.0004 1.0276 32 1 -0.3634 0.8898 -0.5143 33 1 -0.3634 -0.8902 -0.5135 34 1 1.9258 2.1221 -0.0004 35 1 7.3433 -2.2422 -0.8797 36 1 7.3608 -2.2133 0.9043 37 1 8.2410 -1.3345 -2.6023 38 1 10.0897 -2.0308 -4.0723 39 1 12.3977 -2.0665 -3.2150 40 1 12.8577 -1.4004 -0.8896 41 1 11.0099 -0.6977 0.5784 42 1 8.8407 1.9465 0.6371 43 1 8.9848 6.2048 -0.8500 44 1 6.2245 0.9439 1.0173 45 1 5.5056 1.0704 -0.6173 46 1 1.9421 -2.1246 0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001081106336.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:01 Heat of formation + Delta-G solvation = 64.473705 kcal Electronic energy + Delta-G solvation = -29278.475073 eV Core-core repulsion = 25362.077180 eV Total energy + Delta-G solvation = -3916.397893 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -43.12382 -41.24891 -39.90830 -38.45993 -35.96473 -35.10068 -33.85842 -33.00723 -31.74426 -30.90748 -29.94743 -29.19446 -27.86930 -25.85348 -24.90810 -23.69443 -23.17372 -22.34220 -22.08632 -21.24784 -20.39677 -19.58201 -18.43650 -17.99361 -17.43365 -17.12296 -16.75530 -16.36909 -16.21080 -15.93921 -15.85230 -15.28333 -15.11965 -14.85059 -14.74457 -14.63911 -14.32403 -14.28398 -14.14625 -13.76631 -13.62603 -13.49477 -13.44324 -13.29785 -13.09551 -12.76436 -12.49462 -12.24834 -11.97380 -11.83642 -11.77087 -11.63539 -11.28198 -11.11817 -10.85077 -10.68859 -9.87295 -9.74079 -9.60533 -9.49963 -9.20932 -7.98094 -5.32771 0.49601 0.55659 0.57485 1.40639 1.43752 1.45481 1.50213 1.72962 2.08297 2.51375 2.51686 2.88969 3.28143 3.31605 3.49559 3.72403 3.76560 3.89654 3.95910 4.01280 4.13516 4.19640 4.20350 4.26879 4.32273 4.38146 4.44221 4.48575 4.50823 4.66762 4.68870 4.76677 4.79137 4.95018 5.05456 5.09560 5.15329 5.20838 5.24595 5.28517 5.53274 5.63519 5.67292 5.75214 5.81375 6.13995 6.18485 6.24349 6.46586 6.81465 7.08853 7.18246 7.81625 8.02776 9.23211 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008492 B = 0.004146 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3296.331828 B = 6752.346799 C = 9310.453045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.452 5.452 3 C 0.187 3.813 4 N -0.498 5.498 5 C -0.102 4.102 6 C 0.609 3.391 7 O -0.582 6.582 8 N -0.603 5.603 9 C 0.125 3.875 10 C -0.063 4.063 11 H 0.099 0.901 12 C -0.072 4.072 13 C -0.128 4.128 14 C -0.126 4.126 15 C -0.129 4.129 16 C -0.124 4.124 17 C -0.126 4.126 18 C 0.184 3.816 19 H 0.058 0.942 20 N -0.731 5.731 21 C -0.225 4.225 22 H 0.056 0.944 23 C -0.055 4.055 24 N -0.981 5.981 25 Si 0.948 3.052 26 H -0.278 1.278 27 H -0.297 1.297 28 H -0.251 1.251 29 C 0.103 3.897 30 C 0.046 3.954 31 H 0.095 0.905 32 H 0.113 0.887 33 H 0.104 0.896 34 H 0.243 0.757 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.114 0.886 38 H 0.138 0.862 39 H 0.145 0.855 40 H 0.143 0.857 41 H 0.130 0.870 42 H 0.368 0.632 43 H 0.257 0.743 44 H 0.055 0.945 45 H 0.084 0.916 46 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.837 -15.879 2.618 19.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.132 5.132 3 C -0.097 4.097 4 N -0.217 5.217 5 C -0.230 4.230 6 C 0.400 3.600 7 O -0.464 6.464 8 N -0.334 5.334 9 C 0.002 3.998 10 C -0.083 4.083 11 H 0.117 0.883 12 C -0.072 4.072 13 C -0.146 4.146 14 C -0.144 4.144 15 C -0.147 4.147 16 C -0.142 4.142 17 C -0.144 4.144 18 C 0.074 3.926 19 H 0.076 0.924 20 N -0.373 5.373 21 C -0.356 4.356 22 H 0.074 0.926 23 C -0.246 4.246 24 N -0.632 5.632 25 Si 0.775 3.225 26 H -0.205 1.205 27 H -0.224 1.224 28 H -0.176 1.176 29 C -0.023 4.023 30 C -0.095 4.095 31 H 0.114 0.886 32 H 0.131 0.869 33 H 0.123 0.877 34 H 0.259 0.741 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.132 0.868 38 H 0.156 0.844 39 H 0.163 0.837 40 H 0.161 0.839 41 H 0.148 0.852 42 H 0.202 0.798 43 H 0.066 0.934 44 H 0.073 0.927 45 H 0.102 0.898 46 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -10.476 -15.865 2.463 19.171 hybrid contribution -0.091 0.329 0.723 0.800 sum -10.567 -15.536 3.187 19.058 Atomic orbital electron populations 1.22542 0.72566 1.07015 1.05575 1.45672 1.09973 1.05541 1.52024 1.25948 0.84545 0.95199 1.03995 1.70743 1.21583 1.10502 1.18831 1.20431 0.93350 0.90982 1.18227 1.16950 0.81626 0.85912 0.75558 1.90719 1.86987 1.14184 1.54515 1.48257 1.05033 1.08783 1.71342 1.21983 0.80906 0.94188 1.02699 1.21436 0.92969 0.94348 0.99519 0.88306 1.19579 0.94195 0.98907 0.94534 1.21090 0.99662 1.00027 0.93787 1.21375 0.92994 0.99769 1.00222 1.21453 0.97108 1.00030 0.96136 1.21424 0.99634 0.98849 0.94310 1.21264 0.92178 1.00064 1.00868 1.21442 0.89944 0.84438 0.96791 0.92430 1.42447 1.59378 1.05407 1.30084 1.18934 1.24691 0.86740 1.05235 0.92581 1.25373 1.02268 0.94990 1.02005 1.69879 1.50300 1.00339 1.42648 0.85516 0.79271 0.77085 0.80596 1.20455 1.22393 1.17568 1.23104 0.99064 0.78925 1.01158 1.22793 0.89330 0.94459 1.02948 0.88611 0.86894 0.87741 0.74126 0.90915 0.90473 0.86808 0.84416 0.83732 0.83912 0.85214 0.79775 0.93403 0.92694 0.89754 0.77602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.31 11.15 127.77 1.42 1.73 16 2 N -0.45 -7.53 3.13 -551.84 -1.72 -9.26 16 3 C 0.19 4.10 12.55 180.10 2.26 6.36 16 4 N -0.50 -16.00 8.38 -188.82 -1.58 -17.58 16 5 C -0.10 -3.26 6.80 40.50 0.28 -2.98 16 6 C 0.61 22.17 7.84 86.63 0.68 22.85 16 7 O -0.58 -22.71 17.21 -4.13 -0.07 -22.79 16 8 N -0.60 -21.56 3.33 -815.69 -2.71 -24.27 16 9 C 0.12 3.96 6.33 86.73 0.55 4.51 16 10 C -0.06 -2.05 2.81 -10.35 -0.03 -2.07 16 11 H 0.10 3.02 7.80 -2.39 -0.02 3.00 16 12 C -0.07 -2.24 4.95 -19.87 -0.10 -2.34 16 13 C -0.13 -3.88 8.11 22.27 0.18 -3.70 16 14 C -0.13 -3.30 10.05 22.27 0.22 -3.08 16 15 C -0.13 -3.09 10.05 22.27 0.22 -2.87 16 16 C -0.12 -3.09 10.05 22.27 0.22 -2.87 16 17 C -0.13 -3.57 9.68 22.27 0.22 -3.35 16 18 C 0.18 7.34 3.09 46.38 0.14 7.48 16 19 H 0.06 2.49 7.19 -2.38 -0.02 2.48 16 20 N -0.73 -34.15 5.07 -316.39 -1.60 -35.75 16 21 C -0.23 -12.80 10.46 84.03 0.88 -11.92 16 22 H 0.06 3.53 8.06 -2.91 -0.02 3.51 16 23 C -0.05 -3.21 5.50 84.86 0.47 -2.75 16 24 N -0.98 -62.74 13.97 21.65 0.30 -62.44 16 25 Si 0.95 45.29 27.73 68.60 1.90 47.20 16 26 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 27 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 28 H -0.25 -10.82 6.52 99.48 0.65 -10.17 16 29 C 0.10 4.01 5.82 86.84 0.51 4.51 16 30 C 0.05 1.06 11.26 83.72 0.94 2.00 16 31 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 32 H 0.11 0.14 8.14 -2.38 -0.02 0.12 16 33 H 0.10 0.22 8.14 -2.38 -0.02 0.20 16 34 H 0.24 3.36 8.06 -2.91 -0.02 3.34 16 35 H 0.07 2.29 6.64 -2.39 -0.02 2.27 16 36 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.11 3.49 7.29 -2.91 -0.02 3.47 16 38 H 0.14 2.95 8.06 -2.91 -0.02 2.93 16 39 H 0.14 2.58 8.06 -2.91 -0.02 2.55 16 40 H 0.14 2.75 8.06 -2.91 -0.02 2.73 16 41 H 0.13 3.29 7.98 -2.91 -0.02 3.26 16 42 H 0.37 16.43 5.59 -92.71 -0.52 15.91 16 43 H 0.26 15.68 8.31 -92.70 -0.77 14.91 16 44 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 45 H 0.08 3.59 6.15 -2.39 -0.01 3.58 16 46 H 0.21 3.64 8.06 -2.91 -0.02 3.61 16 Total: -1.00 -80.96 382.06 4.00 -76.96 By element: Atomic # 1 Polarization: 35.98 SS G_CDS: 0.42 Total: 36.40 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: 9.07 Total: 11.53 kcal Atomic # 7 Polarization: -141.98 SS G_CDS: -7.32 Total: -149.30 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: -0.07 Total: -22.79 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 1.90 Total: 47.20 kcal Total: -80.96 4.00 -76.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081106336.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.436 kcal (2) G-P(sol) polarization free energy of solvation -80.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds