Wall clock time and date at job start Sat Apr 11 2020 06:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34500 * 126.47519 * 2 1 4 4 N 1.30857 * 109.16355 * 180.22974 * 3 2 1 5 5 C 1.33318 * 109.68766 * 359.76856 * 4 3 2 6 6 C 1.36658 * 107.78333 * 359.97438 * 5 4 3 7 7 C 1.46765 * 126.84257 * 179.97438 * 6 5 4 8 8 O 1.21687 * 119.99961 * 187.96368 * 7 6 5 9 9 N 1.34777 * 120.00375 * 7.68701 * 7 6 5 10 10 C 1.48116 * 127.03671 * 178.63901 * 9 7 6 11 11 C 1.54595 * 103.42123 * 219.28612 * 10 9 7 12 12 H 1.09004 * 110.73066 * 81.24925 * 11 10 9 13 13 C 1.50703 * 110.83253 * 204.44506 * 11 10 9 14 14 C 1.38237 * 119.99569 * 53.29399 * 13 11 10 15 15 C 1.38236 * 119.99596 * 179.78505 * 14 13 11 16 16 C 1.38233 * 120.00380 * 0.44183 * 15 14 13 17 17 C 1.38237 * 119.99555 * 359.81268 * 16 15 14 18 18 C 1.38232 * 120.00021 * 233.56383 * 13 11 10 19 19 C 1.54612 * 102.91572 * 322.86941 * 11 10 9 20 20 H 1.08993 * 110.32863 * 262.80582 * 19 11 10 21 21 N 1.46503 * 110.32618 * 140.58834 * 19 11 10 22 22 C 1.36938 * 119.99917 * 157.92475 * 21 19 11 23 23 H 1.08004 * 120.00028 * 0.02562 * 22 21 19 24 24 C 1.38811 * 120.00029 * 180.02562 * 22 21 19 25 25 N 1.31625 * 120.00075 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 120.00100 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47377 * 89.99784 * 26 24 22 28 28 H 1.48500 * 109.46934 * 210.00084 * 26 24 22 29 29 H 1.48500 * 109.47046 * 329.99704 * 26 24 22 30 30 C 1.47491 * 127.02853 * 358.95891 * 9 7 6 31 31 H 1.08999 * 109.47220 * 274.90272 * 1 2 3 32 32 H 1.08997 * 109.46721 * 34.90442 * 1 2 3 33 33 H 1.08999 * 109.47045 * 154.90154 * 1 2 3 34 34 H 1.08002 * 125.41657 * 0.03183 * 3 2 1 35 35 H 1.07994 * 126.10523 * 179.97438 * 5 4 3 36 36 H 1.08995 * 110.66469 * 337.77267 * 10 9 7 37 37 H 1.09009 * 110.65916 * 100.89099 * 10 9 7 38 38 H 1.07994 * 120.00391 * 359.97438 * 14 13 11 39 39 H 1.07999 * 120.00158 * 180.27367 * 15 14 13 40 40 H 1.07996 * 120.00642 * 179.83589 * 16 15 14 41 41 H 1.08006 * 119.99966 * 179.97438 * 17 16 15 42 42 H 1.08001 * 120.00185 * 359.97438 * 18 13 11 43 43 H 0.96999 * 120.00358 * 337.92739 * 21 19 11 44 44 H 0.97001 * 119.99916 * 179.97438 * 25 24 22 45 45 H 1.08993 * 109.91200 * 273.87643 * 30 9 7 46 46 H 1.09002 * 109.91173 * 34.96102 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2645 1.0815 0.0000 4 7 3.5138 0.6921 -0.0050 5 6 3.5691 -0.6399 -0.0032 6 6 2.2863 -1.1109 0.0037 7 6 1.8650 -2.5167 0.0073 8 8 0.6898 -2.8001 -0.1325 9 7 2.7802 -3.4942 0.1599 10 6 2.5273 -4.9526 0.2149 11 6 3.5053 -5.4455 1.3059 12 1 3.0925 -5.2742 2.3001 13 6 3.8350 -6.9031 1.1113 14 6 4.3047 -7.3482 -0.1103 15 6 4.6114 -8.6845 -0.2875 16 6 4.4397 -9.5771 0.7539 17 6 3.9650 -9.1328 1.9738 18 6 3.6624 -7.7958 2.1525 19 6 4.7551 -4.5656 1.0729 20 1 5.4884 -5.1014 0.4703 21 7 5.3422 -4.1659 2.3543 22 6 6.6569 -3.7879 2.4168 23 1 7.2608 -3.7841 1.5215 24 6 7.2133 -3.4097 3.6310 25 7 6.4771 -3.4139 4.7221 26 14 9.0065 -2.8934 3.7162 27 1 9.1110 -1.4287 3.4951 28 1 9.5562 -3.2326 5.0534 29 1 9.7778 -3.6086 2.6680 30 6 4.2380 -3.3300 0.3128 31 1 -0.3633 0.0878 1.0239 32 1 -0.3633 0.8428 -0.5880 33 1 -0.3633 -0.9306 -0.4359 34 1 1.9289 2.1081 0.0005 35 1 4.4673 -1.2395 -0.0067 36 1 1.4960 -5.1534 0.5047 37 1 2.7565 -5.4190 -0.7434 38 1 4.4350 -6.6516 -0.9251 39 1 4.9826 -9.0316 -1.2405 40 1 4.6767 -10.6215 0.6147 41 1 3.8304 -9.8303 2.7874 42 1 3.2917 -7.4487 3.1056 43 1 4.7997 -4.1690 3.1584 44 1 6.8660 -3.1500 5.5706 45 1 4.7100 -3.2731 -0.6679 46 1 4.4520 -2.4247 0.8808 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001081141247.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:08 Heat of formation + Delta-G solvation = 90.118549 kcal Electronic energy + Delta-G solvation = -29577.440146 eV Core-core repulsion = 25662.154297 eV Total energy + Delta-G solvation = -3915.285849 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.13873 -40.00973 -38.76576 -37.21233 -34.28653 -33.83975 -32.73758 -30.93604 -30.72433 -30.23355 -28.07863 -27.59099 -26.98591 -24.76290 -23.49176 -22.63436 -22.04465 -21.44715 -20.99966 -19.75757 -19.29580 -17.45571 -17.06420 -16.67843 -16.41539 -15.97029 -15.63881 -15.34578 -14.87115 -14.73881 -14.46454 -14.11746 -13.74470 -13.66297 -13.40422 -13.30163 -13.14257 -13.01996 -12.90675 -12.78444 -12.57274 -12.42972 -12.07460 -11.67176 -11.21491 -10.96486 -10.90829 -10.79033 -10.61953 -10.45754 -10.23779 -10.10568 -9.79627 -9.71915 -9.65199 -9.08202 -8.71948 -8.64671 -8.51168 -8.33743 -7.06818 -5.83966 -3.14851 1.40214 1.55323 1.61028 2.45412 2.94672 3.27668 3.42085 3.47099 3.48260 3.48666 3.96166 4.51663 4.56900 4.61890 4.72429 4.86071 4.94779 5.08029 5.09806 5.15682 5.16709 5.23715 5.28043 5.41630 5.47596 5.51323 5.53045 5.62657 5.68146 5.70590 5.78237 5.91981 6.06748 6.08058 6.17205 6.21463 6.25463 6.33317 6.41549 6.61592 6.62653 6.68615 6.77666 6.89897 7.06965 7.20326 7.63063 7.67224 7.95290 8.24636 8.32631 9.45222 9.97527 10.32048 11.37808 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007338 B = 0.004713 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3814.647506 B = 5939.104026 C = 9029.993059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.431 5.431 3 C 0.200 3.800 4 N -0.496 5.496 5 C 0.036 3.964 6 C -0.083 4.083 7 C 0.613 3.387 8 O -0.563 6.563 9 N -0.600 5.600 10 C 0.122 3.878 11 C -0.075 4.075 12 H 0.093 0.907 13 C -0.052 4.052 14 C -0.116 4.116 15 C -0.121 4.121 16 C -0.130 4.130 17 C -0.119 4.119 18 C -0.106 4.106 19 C 0.181 3.819 20 H 0.072 0.928 21 N -0.711 5.711 22 C -0.249 4.249 23 H 0.073 0.927 24 C -0.005 4.005 25 N -0.928 5.928 26 Si 0.905 3.095 27 H -0.288 1.288 28 H -0.292 1.292 29 H -0.281 1.281 30 C 0.053 3.947 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.107 0.893 34 H 0.210 0.790 35 H 0.194 0.806 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.121 0.879 39 H 0.117 0.883 40 H 0.116 0.884 41 H 0.118 0.882 42 H 0.122 0.878 43 H 0.386 0.614 44 H 0.256 0.744 45 H 0.064 0.936 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.816 -2.421 -10.824 15.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.113 5.113 3 C -0.082 4.082 4 N -0.214 5.214 5 C -0.118 4.118 6 C -0.199 4.199 7 C 0.403 3.597 8 O -0.444 6.444 9 N -0.331 5.331 10 C -0.001 4.001 11 C -0.095 4.095 12 H 0.111 0.889 13 C -0.053 4.053 14 C -0.134 4.134 15 C -0.139 4.139 16 C -0.148 4.148 17 C -0.137 4.137 18 C -0.124 4.124 19 C 0.068 3.932 20 H 0.090 0.910 21 N -0.351 5.351 22 C -0.379 4.379 23 H 0.091 0.909 24 C -0.202 4.202 25 N -0.575 5.575 26 Si 0.736 3.264 27 H -0.215 1.215 28 H -0.218 1.218 29 H -0.206 1.206 30 C -0.073 4.073 31 H 0.096 0.904 32 H 0.103 0.897 33 H 0.126 0.874 34 H 0.227 0.773 35 H 0.211 0.789 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.139 0.861 39 H 0.135 0.865 40 H 0.134 0.866 41 H 0.136 0.864 42 H 0.140 0.860 43 H 0.220 0.780 44 H 0.066 0.934 45 H 0.082 0.918 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -10.815 -1.932 -10.904 15.478 hybrid contribution 0.213 -0.029 0.552 0.592 sum -10.602 -1.961 -10.352 14.947 Atomic orbital electron populations 1.22289 0.75686 1.05876 1.03871 1.45204 1.08066 1.05788 1.52218 1.25135 0.85819 0.93486 1.03804 1.70213 1.18779 1.12487 1.19941 1.23526 0.96183 0.91154 1.00892 1.20624 0.91538 0.88609 1.19158 1.16284 0.84273 0.82611 0.76536 1.90726 1.16934 1.83749 1.52970 1.48332 1.08411 1.06088 1.70272 1.22441 1.00138 0.78933 0.98565 1.21550 0.96943 0.91219 0.99758 0.88894 1.19559 0.97943 0.94117 0.93653 1.20978 0.99643 0.95681 0.97097 1.21049 1.00436 0.93519 0.98851 1.21063 1.00730 0.99352 0.93685 1.21094 0.99625 0.95764 0.97244 1.21082 0.99761 0.93017 0.98587 1.21184 0.91904 0.90388 0.89721 0.91008 1.42454 1.10080 1.78964 1.03589 1.19207 0.86866 1.37790 0.94084 0.90896 1.24740 0.98106 1.01790 0.95537 1.69660 1.35478 1.53683 0.98678 0.86224 0.84766 0.78504 0.76897 1.21481 1.21809 1.20628 1.24026 0.78034 1.04390 1.00813 0.90408 0.89706 0.87429 0.77339 0.78907 0.89871 0.90589 0.86119 0.86450 0.86630 0.86412 0.86042 0.77955 0.93382 0.91790 0.88090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.64 10.89 59.85 0.65 1.29 16 2 N -0.43 -5.81 3.17 -121.98 -0.39 -6.20 16 3 C 0.20 2.56 12.52 -90.57 -1.13 1.42 16 4 N -0.50 -8.11 11.20 -14.43 -0.16 -8.27 16 5 C 0.04 0.60 10.29 -17.48 -0.18 0.42 16 6 C -0.08 -1.35 6.87 -82.14 -0.56 -1.92 16 7 C 0.61 10.40 7.86 -12.81 -0.10 10.30 16 8 O -0.56 -10.25 14.99 5.20 0.08 -10.18 16 9 N -0.60 -9.48 3.29 -171.48 -0.56 -10.04 16 10 C 0.12 1.73 6.45 -2.32 -0.01 1.71 16 11 C -0.07 -1.15 2.98 -90.08 -0.27 -1.42 16 12 H 0.09 1.56 7.54 -51.93 -0.39 1.17 16 13 C -0.05 -0.76 4.93 -104.62 -0.52 -1.27 16 14 C -0.12 -1.52 8.19 -39.58 -0.32 -1.84 16 15 C -0.12 -1.45 10.05 -39.58 -0.40 -1.85 16 16 C -0.13 -1.56 10.05 -39.58 -0.40 -1.96 16 17 C -0.12 -1.53 10.05 -39.58 -0.40 -1.93 16 18 C -0.11 -1.53 9.68 -39.58 -0.38 -1.91 16 19 C 0.18 3.20 3.13 -66.56 -0.21 2.99 16 20 H 0.07 1.28 7.15 -51.93 -0.37 0.91 16 21 N -0.71 -16.28 5.08 -52.10 -0.26 -16.55 16 22 C -0.25 -6.41 9.97 -15.06 -0.15 -6.57 16 23 H 0.07 1.82 7.83 -52.48 -0.41 1.40 16 24 C 0.00 -0.13 5.50 -17.43 -0.10 -0.23 16 25 N -0.93 -27.01 13.06 55.49 0.72 -26.28 16 26 Si 0.91 21.75 29.55 -169.99 -5.02 16.73 16 27 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 28 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 29 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 30 C 0.05 0.86 5.22 -2.98 -0.02 0.84 16 31 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.11 1.26 6.13 -51.93 -0.32 0.94 16 34 H 0.21 1.66 8.06 -52.49 -0.42 1.23 16 35 H 0.19 3.15 4.81 -52.49 -0.25 2.89 16 36 H 0.08 1.20 7.86 -51.93 -0.41 0.79 16 37 H 0.08 0.95 6.71 -51.92 -0.35 0.60 16 38 H 0.12 1.41 7.25 -52.49 -0.38 1.03 16 39 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 40 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 41 H 0.12 1.27 8.06 -52.48 -0.42 0.84 16 42 H 0.12 1.70 7.98 -52.49 -0.42 1.28 16 43 H 0.39 9.65 7.54 -40.82 -0.31 9.35 16 44 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 45 H 0.06 0.91 8.10 -51.93 -0.42 0.49 16 46 H 0.10 1.86 5.02 -51.93 -0.26 1.59 16 LS Contribution 377.02 15.07 5.68 5.68 Total: -1.00 -32.81 377.02 -10.38 -43.18 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: -5.96 Total: 13.85 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: -4.50 Total: -1.92 kcal Atomic # 7 Polarization: -66.69 SS G_CDS: -0.65 Total: -67.35 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.08 Total: -10.18 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.81 -10.38 -43.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081141247.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.303 kcal (2) G-P(sol) polarization free energy of solvation -32.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds