Wall clock time and date at job start Sat Apr 11 2020 06:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34500 * 126.47519 * 2 1 4 4 N 1.30857 * 109.16355 * 180.22974 * 3 2 1 5 5 C 1.33318 * 109.68766 * 359.76856 * 4 3 2 6 6 C 1.36658 * 107.78333 * 359.97438 * 5 4 3 7 7 C 1.46765 * 126.84257 * 179.97438 * 6 5 4 8 8 O 1.21687 * 119.99961 * 187.96368 * 7 6 5 9 9 N 1.34777 * 120.00375 * 7.68701 * 7 6 5 10 10 C 1.48116 * 127.03671 * 178.63901 * 9 7 6 11 11 C 1.54595 * 103.42123 * 219.28612 * 10 9 7 12 12 H 1.09004 * 110.73066 * 81.24925 * 11 10 9 13 13 C 1.50703 * 110.83253 * 204.44506 * 11 10 9 14 14 C 1.38237 * 119.99569 * 53.29399 * 13 11 10 15 15 C 1.38236 * 119.99596 * 179.78505 * 14 13 11 16 16 C 1.38233 * 120.00380 * 0.44183 * 15 14 13 17 17 C 1.38237 * 119.99555 * 359.81268 * 16 15 14 18 18 C 1.38232 * 120.00021 * 233.56383 * 13 11 10 19 19 C 1.54612 * 102.91572 * 322.86941 * 11 10 9 20 20 H 1.08993 * 110.32863 * 262.80582 * 19 11 10 21 21 N 1.46503 * 110.32618 * 140.58834 * 19 11 10 22 22 C 1.36938 * 119.99917 * 157.92475 * 21 19 11 23 23 H 1.08004 * 120.00028 * 0.02562 * 22 21 19 24 24 C 1.38811 * 120.00029 * 180.02562 * 22 21 19 25 25 N 1.31625 * 120.00075 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 120.00100 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47377 * 89.99784 * 26 24 22 28 28 H 1.48500 * 109.46934 * 210.00084 * 26 24 22 29 29 H 1.48500 * 109.47046 * 329.99704 * 26 24 22 30 30 C 1.47491 * 127.02853 * 358.95891 * 9 7 6 31 31 H 1.08999 * 109.47220 * 274.90272 * 1 2 3 32 32 H 1.08997 * 109.46721 * 34.90442 * 1 2 3 33 33 H 1.08999 * 109.47045 * 154.90154 * 1 2 3 34 34 H 1.08002 * 125.41657 * 0.03183 * 3 2 1 35 35 H 1.07994 * 126.10523 * 179.97438 * 5 4 3 36 36 H 1.08995 * 110.66469 * 337.77267 * 10 9 7 37 37 H 1.09009 * 110.65916 * 100.89099 * 10 9 7 38 38 H 1.07994 * 120.00391 * 359.97438 * 14 13 11 39 39 H 1.07999 * 120.00158 * 180.27367 * 15 14 13 40 40 H 1.07996 * 120.00642 * 179.83589 * 16 15 14 41 41 H 1.08006 * 119.99966 * 179.97438 * 17 16 15 42 42 H 1.08001 * 120.00185 * 359.97438 * 18 13 11 43 43 H 0.96999 * 120.00358 * 337.92739 * 21 19 11 44 44 H 0.97001 * 119.99916 * 179.97438 * 25 24 22 45 45 H 1.08993 * 109.91200 * 273.87643 * 30 9 7 46 46 H 1.09002 * 109.91173 * 34.96102 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2645 1.0815 0.0000 4 7 3.5138 0.6921 -0.0050 5 6 3.5691 -0.6399 -0.0032 6 6 2.2863 -1.1109 0.0037 7 6 1.8650 -2.5167 0.0073 8 8 0.6898 -2.8001 -0.1325 9 7 2.7802 -3.4942 0.1599 10 6 2.5273 -4.9526 0.2149 11 6 3.5053 -5.4455 1.3059 12 1 3.0925 -5.2742 2.3001 13 6 3.8350 -6.9031 1.1113 14 6 4.3047 -7.3482 -0.1103 15 6 4.6114 -8.6845 -0.2875 16 6 4.4397 -9.5771 0.7539 17 6 3.9650 -9.1328 1.9738 18 6 3.6624 -7.7958 2.1525 19 6 4.7551 -4.5656 1.0729 20 1 5.4884 -5.1014 0.4703 21 7 5.3422 -4.1659 2.3543 22 6 6.6569 -3.7879 2.4168 23 1 7.2608 -3.7841 1.5215 24 6 7.2133 -3.4097 3.6310 25 7 6.4771 -3.4139 4.7221 26 14 9.0065 -2.8934 3.7162 27 1 9.1110 -1.4287 3.4951 28 1 9.5562 -3.2326 5.0534 29 1 9.7778 -3.6086 2.6680 30 6 4.2380 -3.3300 0.3128 31 1 -0.3633 0.0878 1.0239 32 1 -0.3633 0.8428 -0.5880 33 1 -0.3633 -0.9306 -0.4359 34 1 1.9289 2.1081 0.0005 35 1 4.4673 -1.2395 -0.0067 36 1 1.4960 -5.1534 0.5047 37 1 2.7565 -5.4190 -0.7434 38 1 4.4350 -6.6516 -0.9251 39 1 4.9826 -9.0316 -1.2405 40 1 4.6767 -10.6215 0.6147 41 1 3.8304 -9.8303 2.7874 42 1 3.2917 -7.4487 3.1056 43 1 4.7997 -4.1690 3.1584 44 1 6.8660 -3.1500 5.5706 45 1 4.7100 -3.2731 -0.6679 46 1 4.4520 -2.4247 0.8808 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001081141247.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:07 Heat of formation + Delta-G solvation = 71.370889 kcal Electronic energy + Delta-G solvation = -29578.253106 eV Core-core repulsion = 25662.154297 eV Total energy + Delta-G solvation = -3916.098808 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.25424 -41.24805 -39.91135 -38.51626 -35.89105 -35.04817 -34.01047 -32.69326 -31.72277 -31.36625 -29.48124 -28.85521 -27.95818 -26.27048 -25.07741 -23.72707 -23.14788 -22.60924 -22.24011 -21.07078 -20.48221 -19.15462 -18.32965 -17.90233 -17.63725 -17.06040 -16.81983 -16.69256 -16.26798 -15.87650 -15.76170 -15.30827 -15.22778 -15.03208 -14.83210 -14.55965 -14.38040 -14.07958 -13.86684 -13.78302 -13.65853 -13.59197 -13.36569 -13.21660 -12.82823 -12.55314 -12.41893 -12.18250 -11.96101 -11.81465 -11.75368 -11.61538 -11.42938 -11.00996 -10.94041 -10.73594 -9.93512 -9.71527 -9.65204 -9.52488 -8.95529 -7.91441 -5.20368 0.22865 0.52873 0.60235 1.36720 1.50766 1.52112 1.59101 1.80888 2.14231 2.22408 2.58605 2.92792 3.34179 3.38904 3.64018 3.69685 3.75468 3.86514 3.95009 4.05543 4.09813 4.16116 4.23265 4.28694 4.35952 4.37427 4.38501 4.41265 4.57930 4.65765 4.68023 4.70764 4.81334 4.87336 4.94872 5.02014 5.11495 5.19997 5.26624 5.36597 5.41604 5.57520 5.67172 5.70870 5.81572 6.10120 6.21660 6.28236 6.35532 6.79865 6.98330 7.36569 8.07643 8.30955 9.31689 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007338 B = 0.004713 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3814.647506 B = 5939.104026 C = 9029.993059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.433 5.433 3 C 0.219 3.781 4 N -0.535 5.535 5 C 0.025 3.975 6 C -0.107 4.107 7 C 0.609 3.391 8 O -0.580 6.580 9 N -0.600 5.600 10 C 0.127 3.873 11 C -0.061 4.061 12 H 0.070 0.930 13 C -0.070 4.070 14 C -0.122 4.122 15 C -0.121 4.121 16 C -0.130 4.130 17 C -0.127 4.127 18 C -0.131 4.131 19 C 0.178 3.822 20 H 0.078 0.922 21 N -0.722 5.722 22 C -0.234 4.234 23 H 0.084 0.916 24 C -0.069 4.069 25 N -0.968 5.968 26 Si 0.963 3.037 27 H -0.290 1.290 28 H -0.301 1.301 29 H -0.266 1.266 30 C 0.065 3.935 31 H 0.086 0.914 32 H 0.127 0.873 33 H 0.087 0.913 34 H 0.259 0.741 35 H 0.188 0.812 36 H 0.080 0.920 37 H 0.101 0.899 38 H 0.136 0.864 39 H 0.146 0.854 40 H 0.144 0.856 41 H 0.134 0.866 42 H 0.111 0.889 43 H 0.371 0.629 44 H 0.248 0.752 45 H 0.089 0.911 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.991 -2.598 -13.182 17.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.113 5.113 3 C -0.063 4.063 4 N -0.254 5.254 5 C -0.129 4.129 6 C -0.223 4.223 7 C 0.400 3.600 8 O -0.463 6.463 9 N -0.331 5.331 10 C 0.005 3.995 11 C -0.081 4.081 12 H 0.088 0.912 13 C -0.070 4.070 14 C -0.140 4.140 15 C -0.139 4.139 16 C -0.148 4.148 17 C -0.145 4.145 18 C -0.149 4.149 19 C 0.068 3.932 20 H 0.096 0.904 21 N -0.361 5.361 22 C -0.366 4.366 23 H 0.102 0.898 24 C -0.262 4.262 25 N -0.619 5.619 26 Si 0.793 3.207 27 H -0.218 1.218 28 H -0.228 1.228 29 H -0.190 1.190 30 C -0.060 4.060 31 H 0.104 0.896 32 H 0.145 0.855 33 H 0.106 0.894 34 H 0.275 0.725 35 H 0.204 0.796 36 H 0.099 0.901 37 H 0.119 0.881 38 H 0.154 0.846 39 H 0.164 0.836 40 H 0.162 0.838 41 H 0.152 0.848 42 H 0.129 0.871 43 H 0.204 0.796 44 H 0.057 0.943 45 H 0.107 0.893 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.010 -2.136 -13.326 17.418 hybrid contribution 0.178 -0.002 1.213 1.226 sum -10.833 -2.138 -12.113 16.391 Atomic orbital electron populations 1.22509 0.73562 1.06669 1.05093 1.45478 1.09350 1.05063 1.51440 1.26076 0.84718 0.95019 1.00501 1.70188 1.21038 1.12253 1.21896 1.23505 0.96319 0.91719 1.01356 1.20593 0.92054 0.88987 1.20672 1.16464 0.84110 0.83150 0.76313 1.90710 1.17453 1.84112 1.54015 1.48356 1.08071 1.06670 1.69953 1.22514 0.99651 0.78087 0.99216 1.21327 0.95834 0.91941 0.99017 0.91201 1.19536 0.99536 0.93274 0.94701 1.21192 0.99353 0.96776 0.96709 1.21433 0.99410 0.92947 1.00088 1.21454 0.99438 1.00876 0.93033 1.21360 0.99373 0.95274 0.98512 1.21194 1.01025 0.94207 0.98447 1.21368 0.92857 0.91281 0.87720 0.90382 1.42592 1.09316 1.79200 1.04977 1.19610 0.87956 1.34988 0.94009 0.89844 1.25451 1.01614 1.03503 0.95608 1.69816 1.36907 1.56252 0.98915 0.85283 0.80973 0.77863 0.76544 1.21784 1.22840 1.19048 1.23727 0.78529 1.02277 1.01443 0.89556 0.85459 0.89441 0.72488 0.79584 0.90127 0.88126 0.84636 0.83598 0.83831 0.84761 0.87101 0.79650 0.94296 0.89259 0.90239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.10 10.89 127.77 1.39 2.49 16 2 N -0.43 -11.00 3.17 -539.82 -1.71 -12.71 16 3 C 0.22 5.11 12.52 180.33 2.26 7.37 16 4 N -0.54 -17.08 11.20 -199.57 -2.24 -19.31 16 5 C 0.02 0.83 10.29 84.10 0.87 1.70 16 6 C -0.11 -3.44 6.87 40.01 0.27 -3.16 16 7 C 0.61 20.74 7.86 86.47 0.68 21.42 16 8 O -0.58 -21.19 14.99 -4.31 -0.06 -21.25 16 9 N -0.60 -18.93 3.29 -814.66 -2.68 -21.62 16 10 C 0.13 3.55 6.45 86.61 0.56 4.11 16 11 C -0.06 -1.91 2.98 -10.45 -0.03 -1.94 16 12 H 0.07 2.50 7.54 -2.38 -0.02 2.48 16 13 C -0.07 -2.01 4.93 -19.87 -0.10 -2.11 16 14 C -0.12 -2.97 8.19 22.27 0.18 -2.79 16 15 C -0.12 -2.56 10.05 22.27 0.22 -2.34 16 16 C -0.13 -2.77 10.05 22.27 0.22 -2.55 16 17 C -0.13 -3.13 10.05 22.27 0.22 -2.90 16 18 C -0.13 -3.81 9.68 22.27 0.22 -3.59 16 19 C 0.18 6.32 3.13 45.88 0.14 6.47 16 20 H 0.08 2.70 7.15 -2.39 -0.02 2.68 16 21 N -0.72 -33.92 5.08 -318.74 -1.62 -35.54 16 22 C -0.23 -12.17 9.97 84.03 0.84 -11.33 16 23 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 24 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16 25 N -0.97 -58.35 13.06 21.65 0.28 -58.07 16 26 Si 0.96 45.35 29.55 68.60 2.03 47.37 16 27 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 28 H -0.30 -14.52 7.11 99.48 0.71 -13.82 16 29 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 30 C 0.07 2.12 5.22 86.53 0.45 2.57 16 31 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.13 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.09 1.96 6.13 -2.39 -0.01 1.95 16 34 H 0.26 2.99 8.06 -2.91 -0.02 2.97 16 35 H 0.19 6.24 4.81 -2.91 -0.01 6.23 16 36 H 0.08 2.32 7.86 -2.39 -0.02 2.30 16 37 H 0.10 2.34 6.71 -2.38 -0.02 2.32 16 38 H 0.14 2.79 7.25 -2.91 -0.02 2.77 16 39 H 0.15 2.23 8.06 -2.91 -0.02 2.20 16 40 H 0.14 2.22 8.06 -2.91 -0.02 2.19 16 41 H 0.13 2.73 8.06 -2.91 -0.02 2.71 16 42 H 0.11 3.33 7.98 -2.91 -0.02 3.30 16 43 H 0.37 19.47 7.54 -92.71 -0.70 18.78 16 44 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 45 H 0.09 2.44 8.10 -2.39 -0.02 2.42 16 46 H 0.08 3.00 5.02 -2.39 -0.01 2.99 16 Total: -1.00 -73.28 377.02 3.18 -70.10 By element: Atomic # 1 Polarization: 40.71 SS G_CDS: 0.32 Total: 41.03 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: 8.87 Total: 10.00 kcal Atomic # 7 Polarization: -139.29 SS G_CDS: -7.97 Total: -147.25 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: -0.06 Total: -21.25 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.37 kcal Total: -73.28 3.18 -70.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081141247.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.472 kcal (2) G-P(sol) polarization free energy of solvation -73.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds