Wall clock time and date at job start Sat Apr 11 2020 06:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47353 * 2 1 4 4 C 1.53003 * 109.46994 * 120.00478 * 2 1 3 5 5 C 1.53004 * 109.46807 * 184.99940 * 4 2 1 6 6 H 1.08995 * 109.47216 * 304.99653 * 5 4 2 7 7 C 1.52999 * 109.47083 * 184.99648 * 5 4 2 8 8 N 1.46498 * 109.47065 * 64.99542 * 5 4 2 9 9 C 1.34777 * 119.99828 * 204.72115 * 8 5 4 10 10 O 1.21283 * 120.00222 * 0.28168 * 9 8 5 11 11 C 1.50703 * 120.00290 * 180.27728 * 9 8 5 12 12 S 1.81000 * 109.47389 * 180.02562 * 11 9 8 13 13 C 1.76198 * 99.99715 * 179.97438 * 12 11 9 14 14 H 1.08001 * 120.00516 * 0.02562 * 13 12 11 15 15 C 1.38803 * 119.99710 * 179.97438 * 13 12 11 16 16 N 1.31626 * 120.00053 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 120.00174 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47356 * 89.99148 * 17 15 13 19 19 H 1.48497 * 109.47342 * 209.99750 * 17 15 13 20 20 H 1.48505 * 109.46847 * 329.99403 * 17 15 13 21 21 N 1.46905 * 109.47024 * 239.99744 * 2 1 3 22 22 C 1.46905 * 110.99633 * 84.99804 * 21 2 1 23 23 C 1.50700 * 109.47042 * 180.02562 * 22 21 2 24 24 C 1.39871 * 126.03646 * 269.69728 * 23 22 21 25 25 N 1.30840 * 108.20212 * 179.81791 * 24 23 22 26 26 N 1.40089 * 108.20007 * 0.43803 * 25 24 23 27 27 C 1.46504 * 126.03511 * 179.69866 * 26 25 24 28 28 C 1.34941 * 107.92773 * 359.71661 * 26 25 24 29 29 H 1.08998 * 109.47353 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47051 * 299.99753 * 1 2 3 31 31 H 1.08994 * 109.47045 * 59.99719 * 1 2 3 32 32 H 1.08993 * 109.47316 * 65.00032 * 4 2 1 33 33 H 1.08998 * 109.46869 * 304.99501 * 4 2 1 34 34 H 1.08996 * 109.47245 * 179.97438 * 7 5 4 35 35 H 1.08995 * 109.47098 * 300.00077 * 7 5 4 36 36 H 1.09003 * 109.47054 * 59.99725 * 7 5 4 37 37 H 0.97001 * 120.00384 * 25.00562 * 8 5 4 38 38 H 1.08998 * 109.46954 * 300.00581 * 11 9 8 39 39 H 1.09002 * 109.46946 * 59.99717 * 11 9 8 40 40 H 0.97000 * 120.00636 * 180.02562 * 16 15 13 41 41 H 1.00900 * 110.99847 * 321.05011 * 21 2 1 42 42 H 1.09002 * 109.47347 * 300.00387 * 22 21 2 43 43 H 1.09009 * 109.46604 * 60.00336 * 22 21 2 44 44 H 1.08005 * 125.90336 * 359.97438 * 24 23 22 45 45 H 1.08996 * 109.46962 * 270.02639 * 27 26 25 46 46 H 1.09005 * 109.47242 * 30.02419 * 27 26 25 47 47 H 1.09000 * 109.47078 * 150.02194 * 27 26 25 48 48 H 1.08003 * 126.12904 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5648 -0.6134 1.3136 6 1 3.9954 -0.9923 0.3868 7 6 4.0852 -1.4384 2.4924 8 7 3.9479 0.7893 1.4924 9 6 5.1633 1.2122 1.0917 10 8 5.9379 0.4327 0.5785 11 6 5.5599 2.6537 1.2812 12 16 7.2360 2.9068 0.6467 13 6 7.4351 4.6245 0.9853 14 1 6.6354 5.1788 1.4541 15 6 8.6201 5.2650 0.6505 16 7 8.7691 6.5480 0.9039 17 14 10.0035 4.3062 -0.1596 18 1 9.8463 4.3618 -1.6352 19 1 11.3088 4.9026 0.2220 20 1 9.9551 2.8918 0.2904 21 7 2.0197 -0.6926 -1.1994 22 6 2.0824 0.2226 -2.3469 23 6 2.5872 -0.5219 -3.5561 24 6 3.9249 -0.6505 -3.9439 25 7 3.9662 -1.3675 -5.0376 26 7 2.6532 -1.7097 -5.3863 27 6 2.2494 -2.5033 -6.5497 28 6 1.8261 -1.1790 -4.4615 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.7516 -1.7716 1.2055 33 1 1.6054 -0.2618 2.1369 34 1 5.1715 -1.3619 2.5380 35 1 3.6546 -1.0595 3.4192 36 1 3.8001 -2.4821 2.3594 37 1 3.3285 1.4128 1.9028 38 1 4.8656 3.2957 0.7391 39 1 5.5312 2.9019 2.3422 40 1 9.5970 6.9958 0.6697 41 1 1.4495 -1.4980 -1.4100 42 1 1.0870 0.6163 -2.5525 43 1 2.7588 1.0462 -2.1182 44 1 4.7769 -0.2326 -3.4282 45 1 2.0746 -1.8414 -7.3979 46 1 3.0398 -3.2116 -6.7985 47 1 1.3337 -3.0473 -6.3184 48 1 0.7495 -1.2632 -4.4470 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133735607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:58 Heat of formation + Delta-G solvation = 32.354097 kcal Electronic energy + Delta-G solvation = -27127.797817 eV Core-core repulsion = 23345.451065 eV Total energy + Delta-G solvation = -3782.346752 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.29655 -39.45910 -37.74700 -35.27146 -33.59275 -32.38905 -32.17023 -31.14806 -29.47769 -28.51724 -27.23827 -26.90354 -25.55447 -24.30269 -21.80044 -21.24517 -20.88413 -20.28500 -20.13607 -17.80325 -17.11881 -16.44962 -16.07196 -15.79793 -15.34276 -15.05752 -14.95210 -14.81508 -14.60791 -14.38729 -13.90055 -13.57810 -13.57089 -13.22463 -13.10056 -12.91858 -12.87157 -12.73703 -12.63995 -12.57555 -12.33900 -12.10771 -11.90311 -11.60490 -11.23660 -11.19073 -10.99407 -10.95459 -10.74993 -10.64517 -10.50057 -9.79876 -9.53491 -9.31066 -8.95266 -8.75307 -8.68608 -8.41970 -8.38394 -6.84272 -6.23974 -3.94506 1.72709 2.36849 2.69067 2.88054 3.16933 3.37648 3.44318 3.56103 3.79338 4.14584 4.33378 4.38539 4.49337 4.57393 4.78351 4.81687 4.83898 4.94235 4.98802 5.05075 5.08305 5.15306 5.18776 5.25749 5.30334 5.38814 5.46861 5.52546 5.62550 5.66992 5.68518 5.73398 5.76608 5.85697 5.86542 5.91155 6.03521 6.10323 6.27093 6.40378 6.57197 6.80191 6.82848 6.93744 7.28124 7.60338 7.82552 7.99223 8.46626 8.70449 9.22685 10.85327 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.009055 B = 0.003020 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3091.581733 B = 9270.147383 C =11296.181892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.081 3.919 3 H 0.082 0.918 4 C -0.112 4.112 5 C 0.148 3.852 6 H 0.104 0.896 7 C -0.165 4.165 8 N -0.730 5.730 9 C 0.531 3.469 10 O -0.517 6.517 11 C -0.124 4.124 12 S -0.141 6.141 13 C -0.520 4.520 14 H 0.087 0.913 15 C 0.095 3.905 16 N -0.882 5.882 17 Si 0.856 3.144 18 H -0.267 1.267 19 H -0.275 1.275 20 H -0.235 1.235 21 N -0.674 5.674 22 C 0.140 3.860 23 C -0.229 4.229 24 C 0.075 3.925 25 N -0.300 5.300 26 N -0.381 5.381 27 C 0.103 3.897 28 C 0.053 3.947 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.051 0.949 36 H 0.059 0.941 37 H 0.393 0.607 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.270 0.730 41 H 0.336 0.664 42 H 0.031 0.969 43 H 0.082 0.918 44 H 0.187 0.813 45 H 0.072 0.928 46 H 0.088 0.912 47 H 0.084 0.916 48 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.799 -18.163 -6.216 29.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.029 4.029 3 H 0.101 0.899 4 C -0.151 4.151 5 C 0.044 3.956 6 H 0.122 0.878 7 C -0.223 4.223 8 N -0.384 5.384 9 C 0.317 3.683 10 O -0.391 6.391 11 C -0.275 4.275 12 S 0.085 5.915 13 C -0.668 4.668 14 H 0.105 0.895 15 C -0.114 4.114 16 N -0.519 5.519 17 Si 0.681 3.319 18 H -0.192 1.192 19 H -0.201 1.201 20 H -0.159 1.159 21 N -0.304 5.304 22 C 0.010 3.990 23 C -0.241 4.241 24 C -0.112 4.112 25 N -0.120 5.120 26 N -0.163 5.163 27 C -0.038 4.038 28 C -0.094 4.094 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.227 0.773 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.080 0.920 41 H 0.154 0.846 42 H 0.049 0.951 43 H 0.100 0.900 44 H 0.204 0.796 45 H 0.091 0.909 46 H 0.107 0.893 47 H 0.102 0.898 48 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -20.015 -19.848 -7.966 29.291 hybrid contribution -2.123 1.585 0.871 2.789 sum -22.137 -18.263 -7.095 29.562 Atomic orbital electron populations 1.22513 0.97493 1.01909 1.02208 1.21607 0.91943 0.98712 0.90667 0.89950 1.21869 0.95053 1.01437 0.96735 1.20860 0.93670 0.81222 0.99867 0.87813 1.22203 1.02343 0.99566 0.98196 1.46052 1.16998 1.10930 1.64412 1.20164 0.81224 0.89624 0.77287 1.90695 1.50451 1.56100 1.41881 1.23288 1.03579 0.95338 1.05303 1.84788 1.12034 1.13764 1.80869 1.22338 1.05655 0.91926 1.46846 0.89493 1.24715 0.97812 0.94468 0.94361 1.69939 1.26965 1.08953 1.46051 0.86737 0.81633 0.82643 0.80870 1.19208 1.20051 1.15853 1.60566 1.57175 1.09408 1.03291 1.20135 0.98598 0.93893 0.86362 1.19957 0.93120 1.10149 1.00885 1.23952 0.97829 0.96268 0.93165 1.77448 0.97606 1.19696 1.17297 1.48469 1.04622 1.41936 1.21318 1.21803 1.01441 0.95062 0.85513 1.22252 0.97102 0.98581 0.91422 0.92577 0.92015 0.92793 0.90664 0.91488 0.91969 0.93038 0.92206 0.77338 0.88837 0.88801 0.92013 0.84569 0.95064 0.89980 0.79626 0.90941 0.89349 0.89757 0.81515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.11 9.16 37.16 0.34 -0.77 16 2 C 0.08 0.63 2.53 -67.71 -0.17 0.46 16 3 H 0.08 0.75 7.28 -51.93 -0.38 0.37 16 4 C -0.11 -0.88 4.43 -26.73 -0.12 -1.00 16 5 C 0.15 1.68 2.52 -67.93 -0.17 1.51 16 6 H 0.10 1.49 7.06 -51.93 -0.37 1.12 16 7 C -0.16 -1.83 9.48 37.16 0.35 -1.48 16 8 N -0.73 -9.15 4.45 -53.81 -0.24 -9.39 16 9 C 0.53 9.39 7.81 -10.98 -0.09 9.30 16 10 O -0.52 -11.16 15.53 5.55 0.09 -11.08 16 11 C -0.12 -2.42 6.16 36.01 0.22 -2.19 16 12 S -0.14 -3.60 18.55 -107.50 -1.99 -5.60 16 13 C -0.52 -15.12 10.04 30.94 0.31 -14.80 16 14 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 15 C 0.09 2.81 5.50 -17.43 -0.10 2.71 16 16 N -0.88 -26.91 13.97 55.49 0.78 -26.13 16 17 Si 0.86 22.12 27.74 -169.99 -4.72 17.41 16 18 H -0.27 -6.83 7.11 56.52 0.40 -6.42 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.23 -6.06 6.74 56.52 0.38 -5.68 16 21 N -0.67 -5.95 5.61 -107.98 -0.61 -6.56 16 22 C 0.14 1.33 5.96 -4.97 -0.03 1.30 16 23 C -0.23 -2.47 5.61 -105.05 -0.59 -3.06 16 24 C 0.07 0.99 11.96 -17.36 -0.21 0.78 16 25 N -0.30 -4.11 12.58 30.63 0.39 -3.73 16 26 N -0.38 -3.89 4.01 -68.16 -0.27 -4.16 16 27 C 0.10 0.59 11.47 59.85 0.69 1.27 16 28 C 0.05 0.48 11.40 -17.23 -0.20 0.28 16 29 H 0.06 0.31 8.13 -51.93 -0.42 -0.11 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.34 7.45 -51.93 -0.39 -0.05 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.39 3.87 8.60 -40.82 -0.35 3.52 16 38 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 39 H 0.09 1.72 8.14 -51.92 -0.42 1.29 16 40 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 41 H 0.34 2.61 8.46 -39.29 -0.33 2.28 16 42 H 0.03 0.26 7.44 -51.93 -0.39 -0.13 16 43 H 0.08 0.94 8.06 -51.92 -0.42 0.52 16 44 H 0.19 2.50 8.06 -52.48 -0.42 2.08 16 45 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 47 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 48 H 0.17 0.88 8.06 -52.48 -0.42 0.46 16 LS Contribution 411.91 15.07 6.21 6.21 Total: -1.00 -36.30 411.91 -8.24 -44.54 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -8.11 Total: 4.17 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: 0.25 Total: -5.68 kcal Atomic # 7 Polarization: -50.02 SS G_CDS: 0.04 Total: -49.97 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.09 Total: -11.08 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.72 Total: 17.41 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -1.99 Total: -5.60 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -36.30 -8.24 -44.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133735607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.896 kcal (2) G-P(sol) polarization free energy of solvation -36.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds