Wall clock time and date at job start Sat Apr 11 2020 06:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47353 * 2 1 4 4 C 1.53003 * 109.46994 * 120.00478 * 2 1 3 5 5 C 1.53004 * 109.46807 * 184.99940 * 4 2 1 6 6 H 1.08995 * 109.47216 * 304.99653 * 5 4 2 7 7 C 1.52999 * 109.47083 * 184.99648 * 5 4 2 8 8 N 1.46498 * 109.47065 * 64.99542 * 5 4 2 9 9 C 1.34777 * 119.99828 * 204.72115 * 8 5 4 10 10 O 1.21283 * 120.00222 * 0.28168 * 9 8 5 11 11 C 1.50703 * 120.00290 * 180.27728 * 9 8 5 12 12 S 1.81000 * 109.47389 * 180.02562 * 11 9 8 13 13 C 1.76198 * 99.99715 * 179.97438 * 12 11 9 14 14 H 1.08001 * 120.00516 * 0.02562 * 13 12 11 15 15 C 1.38803 * 119.99710 * 179.97438 * 13 12 11 16 16 N 1.31626 * 120.00053 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 120.00174 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47356 * 89.99148 * 17 15 13 19 19 H 1.48497 * 109.47342 * 209.99750 * 17 15 13 20 20 H 1.48505 * 109.46847 * 329.99403 * 17 15 13 21 21 N 1.46905 * 109.47024 * 239.99744 * 2 1 3 22 22 C 1.46905 * 110.99633 * 84.99804 * 21 2 1 23 23 C 1.50700 * 109.47042 * 180.02562 * 22 21 2 24 24 C 1.39871 * 126.03646 * 269.69728 * 23 22 21 25 25 N 1.30840 * 108.20212 * 179.81791 * 24 23 22 26 26 N 1.40089 * 108.20007 * 0.43803 * 25 24 23 27 27 C 1.46504 * 126.03511 * 179.69866 * 26 25 24 28 28 C 1.34941 * 107.92773 * 359.71661 * 26 25 24 29 29 H 1.08998 * 109.47353 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47051 * 299.99753 * 1 2 3 31 31 H 1.08994 * 109.47045 * 59.99719 * 1 2 3 32 32 H 1.08993 * 109.47316 * 65.00032 * 4 2 1 33 33 H 1.08998 * 109.46869 * 304.99501 * 4 2 1 34 34 H 1.08996 * 109.47245 * 179.97438 * 7 5 4 35 35 H 1.08995 * 109.47098 * 300.00077 * 7 5 4 36 36 H 1.09003 * 109.47054 * 59.99725 * 7 5 4 37 37 H 0.97001 * 120.00384 * 25.00562 * 8 5 4 38 38 H 1.08998 * 109.46954 * 300.00581 * 11 9 8 39 39 H 1.09002 * 109.46946 * 59.99717 * 11 9 8 40 40 H 0.97000 * 120.00636 * 180.02562 * 16 15 13 41 41 H 1.00900 * 110.99847 * 321.05011 * 21 2 1 42 42 H 1.09002 * 109.47347 * 300.00387 * 22 21 2 43 43 H 1.09009 * 109.46604 * 60.00336 * 22 21 2 44 44 H 1.08005 * 125.90336 * 359.97438 * 24 23 22 45 45 H 1.08996 * 109.46962 * 270.02639 * 27 26 25 46 46 H 1.09005 * 109.47242 * 30.02419 * 27 26 25 47 47 H 1.09000 * 109.47078 * 150.02194 * 27 26 25 48 48 H 1.08003 * 126.12904 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5648 -0.6134 1.3136 6 1 3.9954 -0.9923 0.3868 7 6 4.0852 -1.4384 2.4924 8 7 3.9479 0.7893 1.4924 9 6 5.1633 1.2122 1.0917 10 8 5.9379 0.4327 0.5785 11 6 5.5599 2.6537 1.2812 12 16 7.2360 2.9068 0.6467 13 6 7.4351 4.6245 0.9853 14 1 6.6354 5.1788 1.4541 15 6 8.6201 5.2650 0.6505 16 7 8.7691 6.5480 0.9039 17 14 10.0035 4.3062 -0.1596 18 1 9.8463 4.3618 -1.6352 19 1 11.3088 4.9026 0.2220 20 1 9.9551 2.8918 0.2904 21 7 2.0197 -0.6926 -1.1994 22 6 2.0824 0.2226 -2.3469 23 6 2.5872 -0.5219 -3.5561 24 6 3.9249 -0.6505 -3.9439 25 7 3.9662 -1.3675 -5.0376 26 7 2.6532 -1.7097 -5.3863 27 6 2.2494 -2.5033 -6.5497 28 6 1.8261 -1.1790 -4.4615 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.7516 -1.7716 1.2055 33 1 1.6054 -0.2618 2.1369 34 1 5.1715 -1.3619 2.5380 35 1 3.6546 -1.0595 3.4192 36 1 3.8001 -2.4821 2.3594 37 1 3.3285 1.4128 1.9028 38 1 4.8656 3.2957 0.7391 39 1 5.5312 2.9019 2.3422 40 1 9.5970 6.9958 0.6697 41 1 1.4495 -1.4980 -1.4100 42 1 1.0870 0.6163 -2.5525 43 1 2.7588 1.0462 -2.1182 44 1 4.7769 -0.2326 -3.4282 45 1 2.0746 -1.8414 -7.3979 46 1 3.0398 -3.2116 -6.7985 47 1 1.3337 -3.0473 -6.3184 48 1 0.7495 -1.2632 -4.4470 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133735607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:57 Heat of formation + Delta-G solvation = 5.750767 kcal Electronic energy + Delta-G solvation = -27128.951424 eV Core-core repulsion = 23345.451065 eV Total energy + Delta-G solvation = -3783.500359 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.09725 -40.72790 -38.60805 -36.30490 -34.66236 -34.33110 -33.12702 -32.19983 -30.25489 -29.85995 -27.83949 -27.83078 -27.58050 -25.04788 -22.80701 -22.05862 -21.71179 -21.29187 -21.05987 -19.86015 -17.94937 -17.75491 -17.26202 -17.02165 -16.55224 -16.35166 -16.04215 -15.88657 -15.55011 -15.37773 -15.15914 -14.93956 -14.67445 -14.35855 -14.28179 -13.82245 -13.75787 -13.57387 -13.46460 -13.33978 -13.19509 -13.17966 -13.04698 -12.99480 -12.79910 -12.56397 -12.38325 -11.98104 -11.85513 -11.65210 -11.58186 -11.47440 -11.16347 -10.81622 -10.49507 -10.36181 -9.94558 -9.42471 -9.05436 -8.96553 -8.50838 -6.20207 0.96548 1.02121 1.31415 1.48184 1.58841 1.72334 1.72614 1.80166 2.25294 2.39434 2.76934 2.87497 3.48782 3.72244 3.79306 3.98050 4.00946 4.16119 4.24478 4.28104 4.33642 4.38203 4.44117 4.48495 4.50648 4.57340 4.62939 4.68332 4.69355 4.83395 4.87477 4.89967 4.93005 5.01465 5.10283 5.18483 5.27534 5.35295 5.38962 5.46723 5.66146 5.71832 5.72294 6.12293 6.18185 6.27541 6.64664 6.70217 6.74862 6.94943 7.38142 8.61638 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.009055 B = 0.003020 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3091.581733 B = 9270.147383 C =11296.181892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.081 3.919 3 H 0.066 0.934 4 C -0.102 4.102 5 C 0.149 3.851 6 H 0.072 0.928 7 C -0.160 4.160 8 N -0.704 5.704 9 C 0.535 3.465 10 O -0.562 6.562 11 C -0.110 4.110 12 S -0.177 6.177 13 C -0.526 4.526 14 H 0.062 0.938 15 C 0.046 3.954 16 N -0.918 5.918 17 Si 0.912 3.088 18 H -0.264 1.264 19 H -0.259 1.259 20 H -0.238 1.238 21 N -0.685 5.685 22 C 0.150 3.850 23 C -0.245 4.245 24 C 0.047 3.953 25 N -0.343 5.343 26 N -0.381 5.381 27 C 0.093 3.907 28 C 0.072 3.928 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.053 0.947 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.026 0.974 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.411 0.589 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.276 0.724 41 H 0.345 0.655 42 H 0.051 0.949 43 H 0.052 0.948 44 H 0.165 0.835 45 H 0.084 0.916 46 H 0.084 0.916 47 H 0.120 0.880 48 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.162 -19.949 -6.111 33.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.029 4.029 3 H 0.085 0.915 4 C -0.140 4.140 5 C 0.045 3.955 6 H 0.090 0.910 7 C -0.219 4.219 8 N -0.357 5.357 9 C 0.321 3.679 10 O -0.440 6.440 11 C -0.261 4.261 12 S 0.049 5.951 13 C -0.674 4.674 14 H 0.080 0.920 15 C -0.159 4.159 16 N -0.556 5.556 17 Si 0.735 3.265 18 H -0.188 1.188 19 H -0.183 1.183 20 H -0.162 1.162 21 N -0.317 5.317 22 C 0.020 3.980 23 C -0.257 4.257 24 C -0.138 4.138 25 N -0.165 5.165 26 N -0.163 5.163 27 C -0.047 4.047 28 C -0.076 4.076 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.045 0.955 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.247 0.753 38 H 0.127 0.873 39 H 0.128 0.872 40 H 0.086 0.914 41 H 0.164 0.836 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.182 0.818 45 H 0.103 0.897 46 H 0.103 0.897 47 H 0.138 0.862 48 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -23.426 -21.632 -7.839 32.836 hybrid contribution -1.257 2.077 0.841 2.569 sum -24.683 -19.555 -6.998 32.259 Atomic orbital electron populations 1.22409 0.95474 1.02747 1.02588 1.21590 0.93441 0.97664 0.90159 0.91526 1.21835 0.91764 1.02722 0.97690 1.20954 0.96238 0.79739 0.98614 0.91021 1.22161 1.00076 1.00842 0.98785 1.45841 1.15238 1.12142 1.62488 1.19852 0.82402 0.88382 0.77310 1.90689 1.52197 1.56803 1.44326 1.23278 0.99576 0.97272 1.06012 1.84757 1.17413 1.11155 1.81742 1.22473 1.05057 0.93639 1.46201 0.91952 1.25535 1.00097 0.95343 0.94963 1.70010 1.28055 1.10273 1.47234 0.85893 0.79482 0.81196 0.79974 1.18841 1.18288 1.16182 1.60496 1.58032 1.09780 1.03404 1.19954 0.98671 0.93073 0.86271 1.20118 0.92178 1.11291 1.02088 1.23861 0.98778 0.97332 0.93857 1.77338 1.00320 1.20932 1.17934 1.48844 1.03608 1.41589 1.22257 1.22188 1.02766 0.95109 0.84599 1.22854 0.98688 0.96392 0.89705 0.91465 0.91264 0.92823 0.89156 0.89228 0.95454 0.91172 0.90366 0.75253 0.87263 0.87206 0.91408 0.83584 0.93078 0.92904 0.81761 0.89744 0.89739 0.86154 0.77072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.47 9.16 71.98 0.66 -0.81 16 2 C 0.08 1.07 2.53 44.92 0.11 1.19 16 3 H 0.07 1.10 7.28 -2.39 -0.02 1.08 16 4 C -0.10 -1.28 4.43 30.60 0.14 -1.14 16 5 C 0.15 3.16 2.52 44.99 0.11 3.27 16 6 H 0.07 2.07 7.06 -2.39 -0.02 2.06 16 7 C -0.16 -3.32 9.48 71.98 0.68 -2.63 16 8 N -0.70 -16.80 4.45 -442.53 -1.97 -18.77 16 9 C 0.54 18.95 7.81 87.66 0.68 19.63 16 10 O -0.56 -25.01 15.53 -3.04 -0.05 -25.06 16 11 C -0.11 -4.27 6.16 71.24 0.44 -3.84 16 12 S -0.18 -9.22 18.55 -56.49 -1.05 -10.27 16 13 C -0.53 -31.23 10.04 67.96 0.68 -30.55 16 14 H 0.06 3.89 8.03 -2.91 -0.02 3.86 16 15 C 0.05 2.75 5.50 84.86 0.47 3.22 16 16 N -0.92 -56.80 13.97 21.65 0.30 -56.50 16 17 Si 0.91 46.33 27.74 68.60 1.90 48.23 16 18 H -0.26 -13.12 7.11 99.48 0.71 -12.42 16 19 H -0.26 -12.28 7.11 99.48 0.71 -11.57 16 20 H -0.24 -12.12 6.74 99.48 0.67 -11.45 16 21 N -0.69 -11.15 5.61 -495.54 -2.78 -13.93 16 22 C 0.15 2.77 5.96 85.56 0.51 3.28 16 23 C -0.24 -5.21 5.61 -20.14 -0.11 -5.33 16 24 C 0.05 1.34 11.96 85.24 1.02 2.36 16 25 N -0.34 -9.77 12.58 -57.02 -0.72 -10.49 16 26 N -0.38 -7.29 4.01 -369.56 -1.48 -8.77 16 27 C 0.09 0.85 11.47 127.77 1.47 2.32 16 28 C 0.07 1.11 11.40 83.54 0.95 2.07 16 29 H 0.07 0.45 8.13 -2.39 -0.02 0.43 16 30 H 0.07 0.51 8.14 -2.38 -0.02 0.49 16 31 H 0.05 0.48 7.45 -2.39 -0.02 0.46 16 32 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.41 7.09 8.60 -92.71 -0.80 6.30 16 38 H 0.11 3.90 8.14 -2.40 -0.02 3.88 16 39 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 40 H 0.28 15.83 8.31 -92.71 -0.77 15.06 16 41 H 0.35 4.51 8.46 -89.69 -0.76 3.75 16 42 H 0.05 0.73 7.44 -2.39 -0.02 0.71 16 43 H 0.05 1.27 8.06 -2.38 -0.02 1.25 16 44 H 0.17 5.10 8.06 -2.91 -0.02 5.08 16 45 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 46 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 47 H 0.12 0.24 8.14 -2.39 -0.02 0.22 16 48 H 0.21 1.23 8.06 -2.91 -0.02 1.21 16 Total: -1.00 -83.23 411.91 1.34 -81.89 By element: Atomic # 1 Polarization: 21.26 SS G_CDS: -0.64 Total: 20.63 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: 7.81 Total: -6.97 kcal Atomic # 7 Polarization: -101.81 SS G_CDS: -6.65 Total: -108.45 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: -0.05 Total: -25.06 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 1.90 Total: 48.23 kcal Atomic # 16 Polarization: -9.22 SS G_CDS: -1.05 Total: -10.27 kcal Total: -83.23 1.34 -81.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133735607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.639 kcal (2) G-P(sol) polarization free energy of solvation -83.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds