Wall clock time and date at job start Sat Apr 11 2020 06:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35973 * 126.06850 * 2 1 4 4 C 1.35710 * 107.55234 * 180.28686 * 3 2 1 5 5 N 1.40796 * 126.06835 * 179.71687 * 4 3 2 6 6 C 1.47844 * 110.99980 * 146.65093 * 5 4 3 7 7 C 1.54906 * 104.79797 * 213.63652 * 6 5 4 8 8 C 1.55137 * 101.65230 * 37.07258 * 7 6 5 9 9 H 1.09000 * 110.70873 * 82.72683 * 8 7 6 10 10 N 1.46498 * 110.70942 * 205.96312 * 8 7 6 11 11 C 1.34769 * 120.00112 * 268.59985 * 10 8 7 12 12 O 1.21607 * 120.00202 * 359.97438 * 11 10 8 13 13 C 1.47437 * 120.00106 * 179.97438 * 11 10 8 14 14 C 1.39229 * 120.28197 * 6.27296 * 13 11 10 15 15 C 1.38220 * 120.09295 * 179.97438 * 14 13 11 16 16 C 1.38826 * 120.67190 * 0.02593 * 15 14 13 17 17 C 1.37597 * 120.57476 * 359.96821 * 16 15 14 18 18 C 1.40698 * 119.87990 * 359.75358 * 17 16 15 19 19 C 1.40893 * 120.32978 * 180.24988 * 18 17 16 20 20 H 1.08003 * 120.00277 * 216.30071 * 19 18 17 21 21 C 1.40274 * 119.99887 * 36.29449 * 19 18 17 22 22 N 1.30632 * 120.00036 * 356.07415 * 21 19 18 23 23 Si 1.86801 * 120.00003 * 176.07700 * 21 19 18 24 24 H 1.48504 * 109.47226 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47242 * 120.00098 * 23 21 19 26 26 H 1.48504 * 109.46853 * 240.00159 * 23 21 19 27 27 C 1.47444 * 110.99841 * 25.80967 * 5 4 3 28 28 C 1.40221 * 107.86310 * 359.58762 * 4 3 2 29 29 N 1.30870 * 108.36274 * 0.42259 * 28 4 3 30 30 H 1.08993 * 109.47301 * 89.99701 * 1 2 3 31 31 H 1.09003 * 109.46831 * 209.99312 * 1 2 3 32 32 H 1.08996 * 109.47123 * 329.99165 * 1 2 3 33 33 H 1.08000 * 126.22328 * 0.02732 * 3 2 1 34 34 H 1.09004 * 110.37417 * 332.47125 * 6 5 4 35 35 H 1.08997 * 110.37317 * 94.80582 * 6 5 4 36 36 H 1.09001 * 110.99093 * 278.98186 * 7 6 5 37 37 H 1.09002 * 111.02283 * 155.17683 * 7 6 5 38 38 H 0.97008 * 119.99792 * 88.59413 * 10 8 7 39 39 H 1.08000 * 119.94811 * 359.97438 * 14 13 11 40 40 H 1.07994 * 119.66061 * 179.97438 * 15 14 13 41 41 H 1.08005 * 119.71159 * 179.97438 * 16 15 14 42 42 H 1.07994 * 120.05806 * 179.97438 * 17 16 15 43 43 H 0.97000 * 119.99747 * 179.97438 * 22 21 19 44 44 H 1.08995 * 109.89024 * 242.66267 * 27 5 4 45 45 H 1.09002 * 109.88699 * 3.69165 * 27 5 4 46 46 H 1.08001 * 125.81627 * 180.12612 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2655 1.0991 0.0000 4 6 3.5524 0.6681 -0.0065 5 7 4.6998 1.4840 -0.0143 6 6 5.8040 0.8528 0.7393 7 6 6.5701 2.0351 1.3834 8 6 5.4101 2.9987 1.7477 9 1 4.9553 2.7132 2.6962 10 7 5.8833 4.3844 1.7950 11 6 6.3267 4.9058 2.9559 12 8 6.3336 4.2263 3.9644 13 6 6.8034 6.3002 3.0034 14 6 6.6778 7.1235 1.8876 15 6 7.1255 8.4302 1.9366 16 6 7.7041 8.9377 3.0920 17 6 7.8419 8.1485 4.2107 18 6 7.3889 6.8166 4.1889 19 6 7.5205 6.0016 5.3307 20 1 7.7465 4.9511 5.2213 21 6 7.3581 6.5545 6.6095 22 7 7.1610 7.8387 6.7457 23 14 7.4236 5.4546 8.1179 24 1 7.6559 4.0497 7.6964 25 1 8.5304 5.8954 9.0044 26 1 6.1358 5.5441 8.8521 27 6 4.4156 2.8012 0.5843 28 6 3.5364 -0.7340 -0.0009 29 7 2.2898 -1.1321 -0.0007 30 1 -0.3633 0.0001 -1.0276 31 1 -0.3633 -0.8901 0.5137 32 1 -0.3633 0.8899 0.5139 33 1 1.9370 2.1279 0.0004 34 1 5.4079 0.1920 1.5105 35 1 6.4572 0.3003 0.0640 36 1 7.2503 2.4960 0.6672 37 1 7.1058 1.7137 2.2766 38 1 5.8775 4.9266 0.9906 39 1 6.2298 6.7404 0.9827 40 1 7.0250 9.0625 1.0670 41 1 8.0490 9.9610 3.1130 42 1 8.2936 8.5517 5.1049 43 1 7.0484 8.2210 7.6300 44 1 4.5555 3.5848 -0.1602 45 1 3.3925 2.8249 0.9597 46 1 4.4050 -1.3759 -0.0020 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647329204.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:52 Heat of formation + Delta-G solvation = 82.977319 kcal Electronic energy + Delta-G solvation = -28670.152829 eV Core-core repulsion = 24754.557313 eV Total energy + Delta-G solvation = -3915.595516 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.49202 -39.45500 -38.25258 -36.66833 -34.24474 -33.64621 -32.96564 -31.34415 -30.04360 -29.62325 -28.48974 -28.33148 -26.17399 -25.34568 -22.75322 -22.29525 -21.60127 -20.83407 -20.22512 -19.94424 -19.43844 -17.84698 -17.49810 -16.31497 -16.17680 -15.58332 -15.40299 -15.20401 -14.61435 -14.43533 -14.28386 -14.01479 -13.91657 -13.47932 -13.28991 -13.22601 -13.03566 -12.71574 -12.70540 -12.68147 -12.16751 -12.09660 -11.78653 -11.48548 -11.37304 -11.15830 -10.99559 -10.89228 -10.75411 -10.66767 -10.50607 -10.03509 -9.83030 -9.72072 -9.57042 -9.32925 -8.43733 -8.40578 -7.67031 -7.59851 -7.33557 -6.73935 -4.40696 1.64262 2.27669 2.32837 2.57386 2.80304 3.11129 3.18731 3.25573 3.73305 3.96998 3.99605 4.10518 4.37638 4.53652 4.65828 4.69830 4.80258 4.85393 4.96223 5.09779 5.11899 5.23014 5.33667 5.41307 5.51332 5.57199 5.61626 5.76952 5.85773 5.96570 6.00713 6.14567 6.18254 6.27535 6.31294 6.60663 6.65019 6.80409 6.97137 7.07469 7.13417 7.15168 7.25369 7.47472 7.49071 7.60892 7.91105 7.99285 8.17212 8.35732 8.67887 8.82732 8.89434 9.36665 10.17309 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013785 B = 0.002632 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.712642 B =10636.368289 C =11577.281708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.378 5.378 3 C 0.012 3.988 4 C -0.038 4.038 5 N -0.446 5.446 6 C 0.044 3.956 7 C -0.141 4.141 8 C 0.134 3.866 9 H 0.094 0.906 10 N -0.738 5.738 11 C 0.566 3.434 12 O -0.536 6.536 13 C -0.258 4.258 14 C -0.061 4.061 15 C -0.242 4.242 16 C -0.098 4.098 17 C -0.147 4.147 18 C 0.141 3.859 19 C -0.412 4.412 20 H 0.101 0.899 21 C 0.066 3.934 22 N -0.801 5.801 23 Si 0.920 3.080 24 H -0.257 1.257 25 H -0.275 1.275 26 H -0.274 1.274 27 C 0.034 3.966 28 C 0.035 3.965 29 N -0.285 5.285 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.175 0.825 34 H 0.056 0.944 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.393 0.607 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.129 0.871 43 H 0.280 0.720 44 H 0.086 0.914 45 H 0.066 0.934 46 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.410 -10.321 -11.574 17.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.164 5.164 3 C -0.135 4.135 4 C -0.145 4.145 5 N -0.164 5.164 6 C -0.083 4.083 7 C -0.180 4.180 8 C 0.027 3.973 9 H 0.112 0.888 10 N -0.393 5.393 11 C 0.360 3.640 12 O -0.413 6.413 13 C -0.263 4.263 14 C -0.080 4.080 15 C -0.262 4.262 16 C -0.117 4.117 17 C -0.166 4.166 18 C 0.137 3.863 19 C -0.441 4.441 20 H 0.119 0.881 21 C -0.151 4.151 22 N -0.427 5.427 23 Si 0.744 3.256 24 H -0.180 1.180 25 H -0.200 1.200 26 H -0.200 1.200 27 C -0.094 4.094 28 C -0.152 4.152 29 N -0.107 5.107 30 H 0.091 0.909 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.192 0.808 34 H 0.074 0.926 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.228 0.772 39 H 0.108 0.892 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.146 0.854 43 H 0.091 0.909 44 H 0.104 0.896 45 H 0.085 0.915 46 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -9.206 -11.547 -11.143 18.500 hybrid contribution 0.095 0.713 0.856 1.118 sum -9.111 -10.834 -10.288 17.499 Atomic orbital electron populations 1.21805 0.73987 1.04446 1.03190 1.48328 1.06326 1.03353 1.58359 1.22212 0.90107 0.93328 1.07829 1.19248 0.90257 0.92279 1.12720 1.61161 1.03812 1.02058 1.49376 1.23148 0.92239 0.96918 0.95995 1.23152 0.98201 0.95413 1.01266 1.21889 0.93525 0.83305 0.98619 0.88825 1.45982 1.68697 1.12161 1.12436 1.18458 0.76234 0.87524 0.81788 1.90689 1.55086 1.62073 1.33498 1.19498 1.15124 0.93463 0.98192 1.20643 0.97762 0.94044 0.95508 1.20320 1.11613 0.95985 0.98238 1.20868 0.99035 0.97851 0.93935 1.21620 1.02560 0.95065 0.97374 1.17541 0.86286 0.91863 0.90657 1.20115 1.36827 0.97960 0.89208 0.88091 1.26111 0.92516 0.95221 1.01217 1.69698 1.35241 1.12158 1.25581 0.86052 0.78331 0.81446 0.79722 1.18003 1.20043 1.19955 1.23299 0.98964 0.91227 0.95908 1.23682 0.95381 0.93496 1.02665 1.77245 1.01240 1.08788 1.23412 0.90931 0.89380 0.89498 0.80817 0.92552 0.89616 0.90164 0.89921 0.77165 0.89221 0.89114 0.89077 0.85371 0.90911 0.89567 0.91546 0.80002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.64 11.48 59.85 0.69 1.33 16 2 N -0.38 -3.93 4.04 -67.79 -0.27 -4.20 16 3 C 0.01 0.12 10.16 -16.62 -0.17 -0.05 16 4 C -0.04 -0.44 5.86 -83.90 -0.49 -0.94 16 5 N -0.45 -5.14 5.30 -168.10 -0.89 -6.03 16 6 C 0.04 0.48 6.07 -2.30 -0.01 0.46 16 7 C -0.14 -1.83 6.76 -24.60 -0.17 -2.00 16 8 C 0.13 1.93 3.31 -66.11 -0.22 1.71 16 9 H 0.09 1.57 7.55 -51.93 -0.39 1.18 16 10 N -0.74 -12.29 5.12 -53.11 -0.27 -12.56 16 11 C 0.57 12.55 7.71 -12.52 -0.10 12.46 16 12 O -0.54 -13.61 13.28 5.27 0.07 -13.54 16 13 C -0.26 -6.12 5.92 -104.36 -0.62 -6.73 16 14 C -0.06 -1.25 9.51 -39.22 -0.37 -1.63 16 15 C -0.24 -5.04 10.03 -39.37 -0.39 -5.43 16 16 C -0.10 -2.18 10.01 -39.60 -0.40 -2.58 16 17 C -0.15 -3.70 8.65 -38.89 -0.34 -4.03 16 18 C 0.14 3.72 5.55 -106.54 -0.59 3.13 16 19 C -0.41 -11.20 7.60 -37.81 -0.29 -11.49 16 20 H 0.10 2.84 6.03 -52.48 -0.32 2.53 16 21 C 0.07 1.70 5.42 -17.30 -0.09 1.60 16 22 N -0.80 -20.59 10.72 55.56 0.60 -19.99 16 23 Si 0.92 19.84 29.56 -169.99 -5.03 14.82 16 24 H -0.26 -5.67 7.11 56.52 0.40 -5.26 16 25 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 26 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 27 C 0.03 0.39 6.38 -2.83 -0.02 0.37 16 28 C 0.04 0.40 10.79 -17.22 -0.19 0.22 16 29 N -0.28 -3.51 12.57 30.70 0.39 -3.12 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.17 1.41 7.04 -52.49 -0.37 1.04 16 34 H 0.06 0.62 7.35 -51.93 -0.38 0.24 16 35 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.39 5.65 6.44 -40.82 -0.26 5.39 16 39 H 0.09 1.51 6.44 -52.49 -0.34 1.17 16 40 H 0.09 1.63 8.06 -52.49 -0.42 1.21 16 41 H 0.09 1.79 8.06 -52.48 -0.42 1.37 16 42 H 0.13 3.33 6.29 -52.49 -0.33 3.00 16 43 H 0.28 6.55 8.29 -40.82 -0.34 6.21 16 44 H 0.09 0.93 7.72 -51.93 -0.40 0.53 16 45 H 0.07 0.73 5.76 -51.93 -0.30 0.43 16 46 H 0.18 1.64 7.89 -52.49 -0.41 1.23 16 LS Contribution 374.91 15.07 5.65 5.65 Total: -1.00 -31.84 374.91 -9.55 -41.39 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -6.02 Total: 11.20 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: -3.76 Total: -13.60 kcal Atomic # 7 Polarization: -45.46 SS G_CDS: -0.46 Total: -45.91 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: 0.07 Total: -13.54 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.03 Total: 14.82 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.84 -9.55 -41.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647329204.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.369 kcal (2) G-P(sol) polarization free energy of solvation -31.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds