Wall clock time and date at job start Sat Apr 11 2020 06:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35973 * 126.06850 * 2 1 4 4 C 1.35710 * 107.55234 * 180.28686 * 3 2 1 5 5 N 1.40796 * 126.06835 * 179.71687 * 4 3 2 6 6 C 1.47844 * 110.99980 * 146.65093 * 5 4 3 7 7 C 1.54906 * 104.79797 * 213.63652 * 6 5 4 8 8 C 1.55137 * 101.65230 * 37.07258 * 7 6 5 9 9 H 1.09000 * 110.70873 * 82.72683 * 8 7 6 10 10 N 1.46498 * 110.70942 * 205.96312 * 8 7 6 11 11 C 1.34769 * 120.00112 * 268.59985 * 10 8 7 12 12 O 1.21607 * 120.00202 * 359.97438 * 11 10 8 13 13 C 1.47437 * 120.00106 * 179.97438 * 11 10 8 14 14 C 1.39229 * 120.28197 * 6.27296 * 13 11 10 15 15 C 1.38220 * 120.09295 * 179.97438 * 14 13 11 16 16 C 1.38826 * 120.67190 * 0.02593 * 15 14 13 17 17 C 1.37597 * 120.57476 * 359.96821 * 16 15 14 18 18 C 1.40698 * 119.87990 * 359.75358 * 17 16 15 19 19 C 1.40893 * 120.32978 * 180.24988 * 18 17 16 20 20 H 1.08003 * 120.00277 * 216.30071 * 19 18 17 21 21 C 1.40274 * 119.99887 * 36.29449 * 19 18 17 22 22 N 1.30632 * 120.00036 * 356.07415 * 21 19 18 23 23 Si 1.86801 * 120.00003 * 176.07700 * 21 19 18 24 24 H 1.48504 * 109.47226 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47242 * 120.00098 * 23 21 19 26 26 H 1.48504 * 109.46853 * 240.00159 * 23 21 19 27 27 C 1.47444 * 110.99841 * 25.80967 * 5 4 3 28 28 C 1.40221 * 107.86310 * 359.58762 * 4 3 2 29 29 N 1.30870 * 108.36274 * 0.42259 * 28 4 3 30 30 H 1.08993 * 109.47301 * 89.99701 * 1 2 3 31 31 H 1.09003 * 109.46831 * 209.99312 * 1 2 3 32 32 H 1.08996 * 109.47123 * 329.99165 * 1 2 3 33 33 H 1.08000 * 126.22328 * 0.02732 * 3 2 1 34 34 H 1.09004 * 110.37417 * 332.47125 * 6 5 4 35 35 H 1.08997 * 110.37317 * 94.80582 * 6 5 4 36 36 H 1.09001 * 110.99093 * 278.98186 * 7 6 5 37 37 H 1.09002 * 111.02283 * 155.17683 * 7 6 5 38 38 H 0.97008 * 119.99792 * 88.59413 * 10 8 7 39 39 H 1.08000 * 119.94811 * 359.97438 * 14 13 11 40 40 H 1.07994 * 119.66061 * 179.97438 * 15 14 13 41 41 H 1.08005 * 119.71159 * 179.97438 * 16 15 14 42 42 H 1.07994 * 120.05806 * 179.97438 * 17 16 15 43 43 H 0.97000 * 119.99747 * 179.97438 * 22 21 19 44 44 H 1.08995 * 109.89024 * 242.66267 * 27 5 4 45 45 H 1.09002 * 109.88699 * 3.69165 * 27 5 4 46 46 H 1.08001 * 125.81627 * 180.12612 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2655 1.0991 0.0000 4 6 3.5524 0.6681 -0.0065 5 7 4.6998 1.4840 -0.0143 6 6 5.8040 0.8528 0.7393 7 6 6.5701 2.0351 1.3834 8 6 5.4101 2.9987 1.7477 9 1 4.9553 2.7132 2.6962 10 7 5.8833 4.3844 1.7950 11 6 6.3267 4.9058 2.9559 12 8 6.3336 4.2263 3.9644 13 6 6.8034 6.3002 3.0034 14 6 6.6778 7.1235 1.8876 15 6 7.1255 8.4302 1.9366 16 6 7.7041 8.9377 3.0920 17 6 7.8419 8.1485 4.2107 18 6 7.3889 6.8166 4.1889 19 6 7.5205 6.0016 5.3307 20 1 7.7465 4.9511 5.2213 21 6 7.3581 6.5545 6.6095 22 7 7.1610 7.8387 6.7457 23 14 7.4236 5.4546 8.1179 24 1 7.6559 4.0497 7.6964 25 1 8.5304 5.8954 9.0044 26 1 6.1358 5.5441 8.8521 27 6 4.4156 2.8012 0.5843 28 6 3.5364 -0.7340 -0.0009 29 7 2.2898 -1.1321 -0.0007 30 1 -0.3633 0.0001 -1.0276 31 1 -0.3633 -0.8901 0.5137 32 1 -0.3633 0.8899 0.5139 33 1 1.9370 2.1279 0.0004 34 1 5.4079 0.1920 1.5105 35 1 6.4572 0.3003 0.0640 36 1 7.2503 2.4960 0.6672 37 1 7.1058 1.7137 2.2766 38 1 5.8775 4.9266 0.9906 39 1 6.2298 6.7404 0.9827 40 1 7.0250 9.0625 1.0670 41 1 8.0490 9.9610 3.1130 42 1 8.2936 8.5517 5.1049 43 1 7.0484 8.2210 7.6300 44 1 4.5555 3.5848 -0.1602 45 1 3.3925 2.8249 0.9597 46 1 4.4050 -1.3759 -0.0020 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647329204.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:50 Heat of formation + Delta-G solvation = 62.097701 kcal Electronic energy + Delta-G solvation = -28671.058237 eV Core-core repulsion = 24754.557313 eV Total energy + Delta-G solvation = -3916.500924 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.30680 -40.89085 -39.57116 -38.35316 -35.78036 -35.22236 -33.86561 -32.47541 -31.73053 -31.25097 -29.50139 -29.31978 -27.33716 -26.79127 -24.27241 -23.25463 -22.93732 -22.37959 -21.18839 -21.16567 -20.76670 -19.35067 -18.64948 -17.92274 -17.44868 -17.01825 -16.36357 -16.25262 -15.93331 -15.76409 -15.56025 -15.35393 -15.21976 -14.90959 -14.56118 -14.47953 -14.15684 -14.05027 -13.87418 -13.48684 -13.42609 -13.34161 -12.98065 -12.91496 -12.84565 -12.60586 -12.49953 -12.40962 -12.29011 -11.90878 -11.80730 -11.73532 -11.49400 -11.17104 -10.68982 -10.34032 -10.22894 -9.91448 -9.36506 -9.16990 -8.59947 -8.51230 -6.35766 0.53247 0.86086 1.03731 1.32713 1.45150 1.51483 1.60989 1.74659 2.21922 2.37231 2.41838 2.81848 3.02811 3.54137 3.60080 3.74773 3.87612 3.96184 4.06193 4.23717 4.28848 4.32762 4.38360 4.44011 4.45476 4.59307 4.62437 4.64738 4.70477 4.76415 4.81903 4.88426 4.97141 5.05854 5.12237 5.18850 5.29009 5.36315 5.38251 5.65991 5.72401 5.81999 5.85151 6.03255 6.12445 6.14306 6.31253 6.36553 6.67864 6.69110 6.83896 6.96030 7.03338 7.69135 8.33153 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013785 B = 0.002632 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.712642 B =10636.368289 C =11577.281708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.380 5.380 3 C 0.016 3.984 4 C -0.062 4.062 5 N -0.443 5.443 6 C 0.052 3.948 7 C -0.137 4.137 8 C 0.129 3.871 9 H 0.065 0.935 10 N -0.715 5.715 11 C 0.563 3.437 12 O -0.577 6.577 13 C -0.273 4.273 14 C -0.056 4.056 15 C -0.232 4.232 16 C -0.095 4.095 17 C -0.178 4.178 18 C 0.108 3.892 19 C -0.451 4.451 20 H 0.076 0.924 21 C 0.028 3.972 22 N -0.829 5.829 23 Si 0.979 3.021 24 H -0.272 1.272 25 H -0.256 1.256 26 H -0.268 1.268 27 C 0.044 3.956 28 C 0.028 3.972 29 N -0.316 5.316 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.109 0.891 33 H 0.198 0.802 34 H 0.053 0.947 35 H 0.105 0.895 36 H 0.085 0.915 37 H 0.062 0.938 38 H 0.408 0.592 39 H 0.136 0.864 40 H 0.133 0.867 41 H 0.118 0.882 42 H 0.109 0.891 43 H 0.286 0.714 44 H 0.104 0.896 45 H 0.075 0.925 46 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.788 -9.873 -14.317 19.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.165 5.165 3 C -0.132 4.132 4 C -0.169 4.169 5 N -0.161 5.161 6 C -0.075 4.075 7 C -0.177 4.177 8 C 0.022 3.978 9 H 0.083 0.917 10 N -0.369 5.369 11 C 0.356 3.644 12 O -0.458 6.458 13 C -0.278 4.278 14 C -0.074 4.074 15 C -0.251 4.251 16 C -0.114 4.114 17 C -0.197 4.197 18 C 0.104 3.896 19 C -0.481 4.481 20 H 0.094 0.906 21 C -0.185 4.185 22 N -0.456 5.456 23 Si 0.801 3.199 24 H -0.197 1.197 25 H -0.180 1.180 26 H -0.193 1.193 27 C -0.084 4.084 28 C -0.159 4.159 29 N -0.139 5.139 30 H 0.105 0.895 31 H 0.109 0.891 32 H 0.128 0.872 33 H 0.215 0.785 34 H 0.071 0.929 35 H 0.123 0.877 36 H 0.104 0.896 37 H 0.081 0.919 38 H 0.246 0.754 39 H 0.154 0.846 40 H 0.151 0.849 41 H 0.136 0.864 42 H 0.127 0.873 43 H 0.097 0.903 44 H 0.122 0.878 45 H 0.093 0.907 46 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -10.609 -11.101 -13.944 20.742 hybrid contribution 0.433 0.600 1.476 1.651 sum -10.176 -10.502 -12.468 19.217 Atomic orbital electron populations 1.22151 0.71809 1.05748 1.04579 1.48728 1.07659 1.02855 1.57295 1.22644 0.89913 0.94361 1.06264 1.19413 0.90721 0.92432 1.14301 1.61281 1.03906 1.01911 1.49038 1.23113 0.92216 0.95944 0.96199 1.23070 0.97844 0.96018 1.00731 1.21996 0.94942 0.81992 0.98834 0.91690 1.45675 1.66861 1.13182 1.11206 1.18430 0.76250 0.87129 0.82639 1.90672 1.56769 1.62895 1.35469 1.19879 1.14627 0.94813 0.98463 1.21088 0.96660 0.93723 0.95962 1.20844 1.09164 0.96381 0.98736 1.21234 0.97975 0.98775 0.93422 1.21533 1.04520 0.95460 0.98212 1.17919 0.87187 0.92758 0.91732 1.20033 1.40140 0.97015 0.90871 0.90552 1.26747 0.92117 0.96495 1.03143 1.69735 1.36543 1.12965 1.26377 0.85203 0.79024 0.78798 0.76903 1.19662 1.18008 1.19265 1.23251 0.98231 0.92022 0.94848 1.23978 0.95723 0.93906 1.02265 1.77199 1.01897 1.10128 1.24686 0.89458 0.89123 0.87238 0.78491 0.92855 0.87705 0.89604 0.91898 0.75376 0.84600 0.84908 0.86410 0.87329 0.90290 0.87809 0.90696 0.78637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.95 11.48 127.77 1.47 2.41 16 2 N -0.38 -7.16 4.04 -368.39 -1.49 -8.65 16 3 C 0.02 0.29 10.16 83.47 0.85 1.13 16 4 C -0.06 -1.32 5.86 37.60 0.22 -1.10 16 5 N -0.44 -9.19 5.30 -685.75 -3.64 -12.83 16 6 C 0.05 1.06 6.07 86.77 0.53 1.59 16 7 C -0.14 -3.50 6.76 31.98 0.22 -3.28 16 8 C 0.13 3.62 3.31 46.17 0.15 3.77 16 9 H 0.06 2.23 7.55 -2.39 -0.02 2.22 16 10 N -0.72 -22.85 5.12 -440.20 -2.26 -25.11 16 11 C 0.56 25.24 7.71 86.67 0.67 25.91 16 12 O -0.58 -30.78 13.28 -4.05 -0.05 -30.83 16 13 C -0.27 -12.94 5.92 -19.70 -0.12 -13.06 16 14 C -0.06 -2.13 9.51 22.50 0.21 -1.92 16 15 C -0.23 -8.78 10.03 22.41 0.22 -8.55 16 16 C -0.10 -4.09 10.01 22.26 0.22 -3.87 16 17 C -0.18 -9.16 8.65 22.72 0.20 -8.96 16 18 C 0.11 5.90 5.55 -21.11 -0.12 5.78 16 19 C -0.45 -26.00 7.60 23.42 0.18 -25.82 16 20 H 0.08 4.64 6.03 -2.91 -0.02 4.62 16 21 C 0.03 1.52 5.42 85.37 0.46 1.99 16 22 N -0.83 -44.45 10.72 21.88 0.23 -44.22 16 23 Si 0.98 42.64 29.56 68.60 2.03 44.67 16 24 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 25 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 26 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 27 C 0.04 0.91 6.38 86.65 0.55 1.46 16 28 C 0.03 0.61 10.79 85.32 0.92 1.53 16 29 N -0.32 -7.44 12.57 -56.77 -0.71 -8.15 16 30 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.20 2.52 7.04 -2.91 -0.02 2.50 16 34 H 0.05 1.13 7.35 -2.38 -0.02 1.12 16 35 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.41 10.41 6.44 -92.70 -0.60 9.81 16 39 H 0.14 3.86 6.44 -2.91 -0.02 3.84 16 40 H 0.13 3.96 8.06 -2.91 -0.02 3.94 16 41 H 0.12 4.33 8.06 -2.91 -0.02 4.31 16 42 H 0.11 5.92 6.29 -2.91 -0.02 5.90 16 43 H 0.29 13.89 8.29 -92.71 -0.77 13.12 16 44 H 0.10 1.81 7.72 -2.39 -0.02 1.80 16 45 H 0.07 1.43 5.76 -2.39 -0.01 1.42 16 46 H 0.20 3.32 7.89 -2.91 -0.02 3.29 16 Total: -1.00 -73.69 374.91 1.38 -72.32 By element: Atomic # 1 Polarization: 33.36 SS G_CDS: 0.43 Total: 33.79 kcal Atomic # 6 Polarization: -27.83 SS G_CDS: 6.84 Total: -20.99 kcal Atomic # 7 Polarization: -91.10 SS G_CDS: -7.86 Total: -98.96 kcal Atomic # 8 Polarization: -30.78 SS G_CDS: -0.05 Total: -30.83 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -73.69 1.38 -72.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647329204.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.413 kcal (2) G-P(sol) polarization free energy of solvation -73.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds