Wall clock time and date at job start Sat Apr 11 2020 06:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46895 * 109.47048 * 2 1 4 4 C 1.46901 * 110.99926 * 305.72005 * 3 2 1 5 5 C 1.53000 * 109.47487 * 293.95908 * 4 3 2 6 6 N 1.46501 * 109.46853 * 180.02562 * 5 4 3 7 7 C 1.34778 * 119.99547 * 180.02562 * 6 5 4 8 8 O 1.21281 * 119.99952 * 359.97438 * 7 6 5 9 9 C 1.50699 * 120.00032 * 179.97438 * 7 6 5 10 10 S 1.80994 * 109.47197 * 179.97438 * 9 7 6 11 11 C 1.76200 * 99.99878 * 180.02562 * 10 9 7 12 12 H 1.07997 * 120.00320 * 359.97438 * 11 10 9 13 13 C 1.38802 * 119.99924 * 180.02562 * 11 10 9 14 14 N 1.31625 * 119.99968 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99897 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47281 * 90.00154 * 15 13 11 17 17 H 1.48509 * 109.46973 * 209.99867 * 15 13 11 18 18 H 1.48497 * 109.47023 * 329.99772 * 15 13 11 19 19 C 1.46900 * 111.00218 * 69.68004 * 3 2 1 20 20 C 1.50701 * 109.47225 * 75.54436 * 19 3 2 21 21 C 1.35317 * 126.04066 * 254.50723 * 20 19 3 22 22 N 1.34954 * 107.74114 * 179.87339 * 21 20 19 23 23 C 1.46502 * 126.03268 * 180.14633 * 22 21 20 24 24 N 1.40084 * 107.92775 * 0.39174 * 22 21 20 25 25 C 1.30835 * 108.20276 * 359.75613 * 24 22 21 26 26 C 1.50709 * 125.89537 * 179.97438 * 25 24 22 27 27 H 1.08995 * 109.47290 * 185.06777 * 1 2 3 28 28 H 1.08997 * 109.47067 * 305.06747 * 1 2 3 29 29 H 1.09004 * 109.46991 * 65.06551 * 1 2 3 30 30 H 1.08998 * 109.46908 * 239.99364 * 2 1 3 31 31 H 1.09004 * 109.46281 * 120.00014 * 2 1 3 32 32 H 1.09005 * 109.46823 * 53.95936 * 4 3 2 33 33 H 1.08998 * 109.46750 * 173.95547 * 4 3 2 34 34 H 1.08999 * 109.46720 * 299.99892 * 5 4 3 35 35 H 1.08997 * 109.46768 * 59.99678 * 5 4 3 36 36 H 0.96991 * 119.99994 * 359.97438 * 6 5 4 37 37 H 1.09002 * 109.47267 * 300.00385 * 9 7 6 38 38 H 1.09008 * 109.46777 * 59.99692 * 9 7 6 39 39 H 0.97009 * 119.99864 * 180.02562 * 14 13 11 40 40 H 1.08996 * 109.47182 * 195.54651 * 19 3 2 41 41 H 1.09000 * 109.47005 * 315.54887 * 19 3 2 42 42 H 1.07999 * 126.12663 * 0.02639 * 21 20 19 43 43 H 1.09001 * 109.46815 * 270.26380 * 23 22 21 44 44 H 1.08997 * 109.47027 * 30.26029 * 23 22 21 45 45 H 1.09000 * 109.47047 * 150.25971 * 23 22 21 46 46 H 1.09004 * 109.47038 * 270.02563 * 26 25 24 47 47 H 1.09004 * 109.47040 * 30.02118 * 26 25 24 48 48 H 1.09000 * 109.47103 * 150.02181 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.4403 2.1482 -1.1134 5 6 1.9502 1.5817 -2.4401 6 7 1.3728 2.3433 -3.5504 7 6 1.6821 2.0204 -4.8218 8 8 2.4388 1.0997 -5.0467 9 6 1.0877 2.8034 -5.9640 10 16 1.6911 2.1334 -7.5334 11 6 0.8633 3.2040 -8.6616 12 1 0.2151 3.9837 -8.2896 13 6 1.0433 3.0447 -10.0287 14 7 1.8329 2.0942 -10.4822 15 14 0.1650 4.1794 -11.2248 16 1 1.0182 5.3628 -11.5017 17 1 -0.0999 3.4527 -12.4926 18 1 -1.1213 4.6244 -10.6312 19 6 1.7462 2.0401 1.2861 20 6 2.7171 1.5366 2.3228 21 6 2.4355 0.6693 3.3226 22 7 3.5693 0.4719 4.0274 23 6 3.7168 -0.3982 5.1967 24 7 4.5789 1.2503 3.4467 25 6 4.0670 1.8879 2.4254 26 6 4.8045 2.8374 1.5166 27 1 -0.3633 -1.0236 0.0908 28 1 -0.3633 0.5904 0.8411 29 1 -0.3633 0.4333 -0.9319 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5139 0.8901 32 1 0.3534 2.0717 -1.0796 33 1 1.7337 3.1944 -1.0283 34 1 3.0370 1.6582 -2.4739 35 1 1.6568 0.5354 -2.5251 36 1 0.7674 3.0794 -3.3705 37 1 0.0009 2.7274 -5.9300 38 1 1.3816 3.8497 -5.8790 39 1 1.9590 1.9832 -11.4376 40 1 1.8593 3.1185 1.1758 41 1 0.7279 1.8118 1.6008 42 1 1.4759 0.2145 3.5196 43 1 3.5030 0.1702 6.1018 44 1 3.0200 -1.2328 5.1187 45 1 4.7370 -0.7795 5.2395 46 1 4.7315 3.8502 1.9130 47 1 5.8529 2.5446 1.4589 48 1 4.3626 2.8042 0.5207 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663359320.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:59 Heat of formation + Delta-G solvation = 44.827499 kcal Electronic energy + Delta-G solvation = -26407.515312 eV Core-core repulsion = 22625.709447 eV Total energy + Delta-G solvation = -3781.805865 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.56444 -39.32320 -38.31603 -34.66583 -34.13750 -32.40843 -31.67165 -30.84734 -30.04274 -29.33224 -27.84838 -26.10983 -25.44395 -24.74061 -23.40681 -21.08098 -20.60571 -20.24116 -19.48219 -17.78939 -16.93213 -16.56210 -16.41910 -16.08016 -15.78488 -15.33987 -14.97902 -14.78382 -14.54111 -14.44742 -14.08761 -13.82974 -13.63700 -13.49796 -13.25976 -13.01158 -12.98413 -12.65554 -12.54278 -12.40950 -12.28187 -12.25264 -12.03171 -11.74318 -11.58059 -11.38791 -11.04764 -11.00392 -10.92713 -10.74332 -10.70334 -9.79460 -9.46347 -9.37042 -9.04973 -8.81315 -8.70398 -8.47859 -8.20565 -6.47334 -6.19561 -3.89870 1.57808 2.20513 2.43324 3.04512 3.15766 3.23830 3.28931 3.32660 3.62519 4.02539 4.18932 4.22489 4.42735 4.67328 4.68801 4.71211 4.73509 4.83408 4.96353 4.96499 5.00088 5.08153 5.14163 5.15551 5.20234 5.26649 5.30154 5.35228 5.49190 5.60795 5.67040 5.69136 5.77238 5.81006 5.82651 5.85893 5.92933 5.95753 6.08921 6.16905 6.45525 6.62956 6.68373 6.82405 6.85462 7.48917 7.61524 7.75718 8.37210 8.67134 9.25693 10.87835 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.029752 B = 0.001662 C = 0.001637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.875684 B =16839.060947 C =17097.691850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.048 3.952 3 N -0.526 5.526 4 C 0.040 3.960 5 C 0.125 3.875 6 N -0.739 5.739 7 C 0.532 3.468 8 O -0.517 6.517 9 C -0.153 4.153 10 S -0.060 6.060 11 C -0.536 4.536 12 H 0.072 0.928 13 C 0.074 3.926 14 N -0.867 5.867 15 Si 0.918 3.082 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.272 1.272 19 C 0.132 3.868 20 C -0.223 4.223 21 C 0.057 3.943 22 N -0.380 5.380 23 C 0.104 3.896 24 N -0.303 5.303 25 C 0.099 3.901 26 C -0.075 4.075 27 H 0.060 0.940 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.046 0.954 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.396 0.604 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.268 0.732 40 H 0.080 0.920 41 H 0.045 0.955 42 H 0.168 0.832 43 H 0.072 0.928 44 H 0.085 0.915 45 H 0.088 0.912 46 H 0.072 0.928 47 H 0.069 0.931 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.406 -1.179 32.921 33.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.080 4.080 3 N -0.249 5.249 4 C -0.088 4.088 5 C 0.001 3.999 6 N -0.394 5.394 7 C 0.318 3.682 8 O -0.391 6.391 9 C -0.304 4.304 10 S 0.166 5.834 11 C -0.684 4.684 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.203 1.203 17 H -0.208 1.208 18 H -0.197 1.197 19 C 0.003 3.997 20 C -0.235 4.235 21 C -0.090 4.090 22 N -0.161 5.161 23 C -0.038 4.038 24 N -0.126 5.126 25 C -0.068 4.068 26 C -0.133 4.133 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.064 0.936 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.230 0.770 37 H 0.107 0.893 38 H 0.108 0.892 39 H 0.078 0.922 40 H 0.098 0.902 41 H 0.063 0.937 42 H 0.185 0.815 43 H 0.090 0.910 44 H 0.104 0.896 45 H 0.107 0.893 46 H 0.090 0.910 47 H 0.088 0.912 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.524 -3.161 33.164 33.319 hybrid contribution -3.447 2.087 -0.574 4.070 sum -2.922 -1.074 32.591 32.739 Atomic orbital electron populations 1.22429 0.98268 1.02413 1.02087 1.22181 0.92671 0.90060 1.03098 1.62050 1.58676 1.02200 1.02012 1.22331 0.97765 0.98218 0.90494 1.21171 0.99184 0.95644 0.83930 1.45921 1.50896 1.36968 1.05650 1.20270 0.80880 0.84062 0.82992 1.90708 1.34815 1.29427 1.84110 1.23528 1.03891 1.02977 0.99974 1.85411 1.62213 1.44810 0.90940 1.22875 1.32930 1.19512 0.93094 0.90937 1.24989 0.95302 0.95813 0.97468 1.70021 1.35228 1.30498 1.14520 0.86173 0.79600 0.80041 0.79705 1.20271 1.20770 1.19725 1.20283 0.94711 0.98071 0.86604 1.19766 0.95630 1.06817 1.01279 1.22288 0.92269 0.99981 0.94453 1.48319 1.06893 1.36035 1.24882 1.21815 1.04571 0.92566 0.84808 1.77349 1.12337 1.10587 1.12316 1.22234 0.93084 0.97235 0.94215 1.20220 0.99655 0.95753 0.97717 0.92066 0.92666 0.91965 0.90188 0.90865 0.93568 0.90156 0.90801 0.91750 0.77023 0.89305 0.89220 0.92201 0.90198 0.93703 0.81456 0.90960 0.89621 0.89327 0.90973 0.91167 0.89281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.36 9.10 37.16 0.34 -1.02 16 2 C 0.05 0.39 5.63 -3.82 -0.02 0.37 16 3 N -0.53 -4.35 4.63 -236.07 -1.09 -5.44 16 4 C 0.04 0.33 4.69 -3.82 -0.02 0.31 16 5 C 0.13 1.47 5.60 -4.04 -0.02 1.44 16 6 N -0.74 -9.68 5.56 -60.29 -0.33 -10.02 16 7 C 0.53 9.96 7.85 -10.99 -0.09 9.87 16 8 O -0.52 -11.92 15.86 5.56 0.09 -11.83 16 9 C -0.15 -3.08 6.16 36.01 0.22 -2.86 16 10 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 11 C -0.54 -15.31 9.50 30.94 0.29 -15.02 16 12 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 13 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 14 N -0.87 -26.25 13.22 55.49 0.73 -25.52 16 15 Si 0.92 21.43 29.55 -169.99 -5.02 16.41 16 16 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 19 C 0.13 0.95 5.01 -4.98 -0.02 0.92 16 20 C -0.22 -1.92 4.95 -105.05 -0.52 -2.44 16 21 C 0.06 0.42 10.98 -17.22 -0.19 0.23 16 22 N -0.38 -3.22 4.01 -68.16 -0.27 -3.49 16 23 C 0.10 0.44 11.47 59.85 0.69 1.13 16 24 N -0.30 -3.44 12.58 33.67 0.42 -3.01 16 25 C 0.10 1.01 7.22 -82.40 -0.59 0.42 16 26 C -0.07 -0.63 10.26 36.01 0.37 -0.26 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.34 6.28 -51.93 -0.33 0.02 16 29 H 0.06 0.49 6.51 -51.93 -0.34 0.16 16 30 H 0.08 0.76 6.75 -51.93 -0.35 0.41 16 31 H 0.07 0.60 7.09 -51.93 -0.37 0.23 16 32 H 0.05 0.35 5.98 -51.93 -0.31 0.04 16 33 H 0.08 0.58 7.83 -51.93 -0.41 0.18 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.06 0.83 6.68 -51.93 -0.35 0.49 16 36 H 0.40 3.91 8.47 -40.82 -0.35 3.57 16 37 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 38 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 39 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 40 H 0.08 0.54 7.74 -51.93 -0.40 0.13 16 41 H 0.04 0.28 6.08 -51.93 -0.32 -0.03 16 42 H 0.17 0.72 8.06 -52.49 -0.42 0.30 16 43 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 44 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 45 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 46 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.09 0.75 7.96 -51.93 -0.41 0.34 16 LS Contribution 406.04 15.07 6.12 6.12 Total: -1.00 -37.04 406.04 -8.93 -45.97 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -7.70 Total: -0.43 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: 0.34 Total: -4.89 kcal Atomic # 7 Polarization: -46.94 SS G_CDS: -0.54 Total: -47.48 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: 0.09 Total: -11.83 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -37.04 -8.93 -45.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663359320.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.798 kcal (2) G-P(sol) polarization free energy of solvation -37.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds