Wall clock time and date at job start Sat Apr 11 2020 06:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46922 * 2 1 4 4 C 1.52997 * 109.47232 * 239.99850 * 2 1 3 5 5 N 1.46900 * 109.47045 * 185.00150 * 4 2 1 6 6 C 1.46903 * 110.99793 * 179.97438 * 5 4 2 7 7 C 1.52998 * 109.46991 * 179.97438 * 6 5 4 8 8 C 1.50703 * 109.46817 * 179.97438 * 7 6 5 9 9 C 1.39875 * 126.03789 * 90.03023 * 8 7 6 10 10 N 1.30832 * 108.20022 * 179.97438 * 9 8 7 11 11 N 1.40084 * 108.20916 * 359.97438 * 10 9 8 12 12 C 1.46502 * 126.03732 * 180.02562 * 11 10 9 13 13 C 1.34942 * 107.92103 * 359.76007 * 11 10 9 14 14 N 1.46506 * 109.46940 * 119.99690 * 2 1 3 15 15 C 1.46499 * 119.99936 * 60.00125 * 14 2 1 16 16 C 1.34773 * 119.99969 * 239.72090 * 14 2 1 17 17 O 1.21281 * 120.00220 * 0.02562 * 16 14 2 18 18 C 1.50706 * 120.00080 * 180.02562 * 16 14 2 19 19 S 1.80989 * 109.47203 * 180.02562 * 18 16 14 20 20 C 1.76206 * 100.00010 * 180.02562 * 19 18 16 21 21 H 1.08001 * 119.99621 * 359.97438 * 20 19 18 22 22 C 1.38794 * 119.99924 * 180.02562 * 20 19 18 23 23 N 1.31633 * 120.00085 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 120.00415 * 359.97438 * 22 20 19 25 25 H 1.48508 * 109.47144 * 90.00296 * 24 22 20 26 26 H 1.48502 * 109.47646 * 210.00409 * 24 22 20 27 27 H 1.48502 * 109.47363 * 330.00583 * 24 22 20 28 28 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47140 * 300.00300 * 1 2 3 30 30 H 1.09001 * 109.47230 * 59.99444 * 1 2 3 31 31 H 1.08998 * 109.46934 * 305.00116 * 4 2 1 32 32 H 1.09000 * 109.46875 * 64.99867 * 4 2 1 33 33 H 1.00894 * 111.00007 * 303.95013 * 5 4 2 34 34 H 1.09001 * 109.47244 * 299.99947 * 6 5 4 35 35 H 1.09001 * 109.47140 * 59.99722 * 6 5 4 36 36 H 1.08992 * 109.47455 * 299.99608 * 7 6 5 37 37 H 1.09001 * 109.47136 * 60.00371 * 7 6 5 38 38 H 1.08001 * 125.89763 * 359.97438 * 9 8 7 39 39 H 1.08997 * 109.47228 * 89.97994 * 12 11 10 40 40 H 1.09003 * 109.46875 * 209.97971 * 12 11 10 41 41 H 1.09005 * 109.47107 * 329.97526 * 12 11 10 42 42 H 1.08005 * 126.12389 * 180.23433 * 13 11 10 43 43 H 1.09003 * 109.47269 * 89.99349 * 15 14 2 44 44 H 1.08994 * 109.47173 * 210.00167 * 15 14 2 45 45 H 1.09005 * 109.47077 * 330.00338 * 15 14 2 46 46 H 1.09004 * 109.46762 * 300.00389 * 18 16 14 47 47 H 1.08998 * 109.46924 * 59.99727 * 18 16 14 48 48 H 0.96996 * 120.00680 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5040 -0.8267 -1.1903 6 6 4.0303 -1.5160 -2.3760 7 6 5.5545 -1.6058 -2.2791 8 6 6.0943 -2.3134 -3.4953 9 6 6.4821 -1.7081 -4.6951 10 7 6.8957 -2.6443 -5.5101 11 7 6.7846 -3.8767 -4.8535 12 6 7.1419 -5.1845 -5.4089 13 6 6.2959 -3.6459 -3.6171 14 7 2.0183 -0.6906 1.1963 15 6 1.6643 -2.0931 1.4281 16 6 2.7977 -0.0372 2.0805 17 8 3.0946 1.1226 1.8863 18 6 3.3005 -0.7477 3.3108 19 16 4.3120 0.3877 4.2923 20 6 4.7548 -0.6732 5.6276 21 1 4.4008 -1.6934 5.6470 22 6 5.5577 -0.1975 6.6550 23 7 5.8889 -0.9902 7.6523 24 14 6.1694 1.5671 6.6219 25 1 5.1911 2.4433 7.3152 26 1 7.4824 1.6490 7.3109 27 1 6.3210 2.0122 5.2133 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.6054 -1.7198 -1.2951 32 1 1.7516 -0.1583 -2.1369 33 1 3.9279 0.0825 -1.0823 34 1 3.6094 -2.5200 -2.4293 35 1 3.7557 -0.9590 -3.2718 36 1 5.9751 -0.6017 -2.2262 37 1 5.8295 -2.1626 -1.3833 38 1 6.4463 -0.6506 -4.9114 39 1 8.1862 -5.4016 -5.1843 40 1 6.5078 -5.9527 -4.9663 41 1 6.9976 -5.1722 -6.4893 42 1 6.0981 -4.3915 -2.8612 43 1 2.4156 -2.7377 0.9718 44 1 1.6236 -2.2851 2.5003 45 1 0.6903 -2.3002 0.9847 46 1 2.4529 -1.0864 3.9067 47 1 3.9021 -1.6068 3.0139 48 1 6.4503 -0.6580 8.3702 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666853749.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:02 Heat of formation + Delta-G solvation = 43.644137 kcal Electronic energy + Delta-G solvation = -26681.186809 eV Core-core repulsion = 22899.329629 eV Total energy + Delta-G solvation = -3781.857179 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.45044 -39.67625 -37.14172 -35.51304 -33.80614 -32.57048 -32.38243 -31.35623 -28.91260 -28.63202 -26.85559 -26.63785 -25.55794 -24.73098 -22.36791 -21.52581 -21.36762 -20.30214 -18.98873 -17.63368 -17.10321 -16.91708 -16.09274 -15.75763 -15.49963 -15.36063 -14.97783 -14.86944 -14.60658 -14.38349 -14.06039 -13.62420 -13.42461 -13.21851 -13.17288 -12.99742 -12.93836 -12.73571 -12.72215 -12.42820 -12.27945 -12.11115 -11.99776 -11.84665 -11.48193 -11.23369 -11.19633 -10.96491 -10.92209 -10.69553 -10.49883 -9.80272 -9.70217 -9.30808 -8.95071 -8.63924 -8.50787 -8.41140 -8.35035 -6.83903 -6.23841 -3.94148 1.60948 2.23408 2.52861 2.82738 3.12592 3.30005 3.37348 3.55202 3.68085 3.99892 4.23525 4.38153 4.56406 4.65280 4.73887 4.80718 4.82526 4.94972 4.99497 5.00642 5.12014 5.15294 5.16174 5.18352 5.26474 5.33779 5.34513 5.44704 5.46658 5.54611 5.57730 5.58956 5.61913 5.86010 5.89869 5.96218 6.00307 6.07524 6.09815 6.13974 6.40473 6.71331 6.73342 6.93924 7.28920 7.41520 7.64538 7.99396 8.46978 8.62648 9.22816 10.85478 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.009851 B = 0.002463 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2841.664276 B =11365.888898 C =13156.755008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.138 3.862 3 H 0.099 0.901 4 C 0.053 3.947 5 N -0.684 5.684 6 C 0.070 3.930 7 C -0.040 4.040 8 C -0.231 4.231 9 C 0.052 3.948 10 N -0.302 5.302 11 N -0.380 5.380 12 C 0.102 3.898 13 C 0.058 3.942 14 N -0.600 5.600 15 C 0.082 3.918 16 C 0.539 3.461 17 O -0.527 6.527 18 C -0.118 4.118 19 S -0.145 6.145 20 C -0.518 4.518 21 H 0.087 0.913 22 C 0.094 3.906 23 N -0.882 5.882 24 Si 0.857 3.143 25 H -0.268 1.268 26 H -0.275 1.275 27 H -0.235 1.235 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.035 0.965 33 H 0.346 0.654 34 H 0.067 0.933 35 H 0.025 0.975 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.181 0.819 39 H 0.074 0.926 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.174 0.826 43 H 0.058 0.942 44 H 0.071 0.929 45 H 0.064 0.936 46 H 0.092 0.908 47 H 0.096 0.904 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.397 -7.598 -25.855 27.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.033 3.967 3 H 0.117 0.883 4 C -0.078 4.078 5 N -0.315 5.315 6 C -0.060 4.060 7 C -0.079 4.079 8 C -0.242 4.242 9 C -0.134 4.134 10 N -0.123 5.123 11 N -0.162 5.162 12 C -0.039 4.039 13 C -0.088 4.088 14 N -0.335 5.335 15 C -0.061 4.061 16 C 0.327 3.673 17 O -0.402 6.402 18 C -0.268 4.268 19 S 0.081 5.919 20 C -0.666 4.666 21 H 0.105 0.895 22 C -0.114 4.114 23 N -0.519 5.519 24 Si 0.682 3.318 25 H -0.193 1.193 26 H -0.201 1.201 27 H -0.159 1.159 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.053 0.947 33 H 0.164 0.836 34 H 0.085 0.915 35 H 0.043 0.957 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.198 0.802 39 H 0.092 0.908 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.191 0.809 43 H 0.076 0.924 44 H 0.090 0.910 45 H 0.082 0.918 46 H 0.111 0.889 47 H 0.115 0.885 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.361 -6.916 -26.816 28.207 hybrid contribution -0.422 -0.150 0.591 0.742 sum -5.783 -7.067 -26.225 27.769 Atomic orbital electron populations 1.22101 0.94912 1.02271 1.02576 1.21005 0.93504 0.98052 0.84130 0.88264 1.22302 0.88774 1.00529 0.96145 1.60328 1.04706 1.26416 1.40075 1.21913 0.94737 0.98829 0.90481 1.19824 0.93733 1.00188 0.94127 1.20073 1.13065 0.92741 0.98369 1.23825 0.98324 0.99310 0.91963 1.77336 1.24521 0.88956 1.21474 1.48456 1.50292 1.06652 1.10805 1.21846 1.01680 0.79451 1.00963 1.22389 0.99759 0.97906 0.88771 1.47542 1.51427 1.12251 1.22276 1.21695 1.00304 0.82010 1.02097 1.20150 0.77033 0.86585 0.83530 1.90657 1.56675 1.16873 1.76013 1.23281 1.03337 1.03333 0.96870 1.84747 1.62892 1.19406 1.24812 1.22326 1.37075 1.00441 1.06719 0.89482 1.24714 0.94534 0.98076 0.94062 1.69941 1.35815 1.36027 1.10144 0.86732 0.79042 0.84740 0.81318 1.19299 1.20069 1.15859 0.92242 0.91775 0.91687 0.90975 0.94657 0.83588 0.91492 0.95687 0.91149 0.90290 0.80194 0.90764 0.89461 0.89403 0.80893 0.92351 0.91048 0.91761 0.88944 0.88542 0.92033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 9.17 37.16 0.34 -1.07 16 2 C 0.14 1.53 2.88 -67.93 -0.20 1.33 16 3 H 0.10 1.33 6.90 -51.93 -0.36 0.97 16 4 C 0.05 0.49 4.98 -3.83 -0.02 0.47 16 5 N -0.68 -7.20 6.23 -113.78 -0.71 -7.91 16 6 C 0.07 0.63 5.67 -3.82 -0.02 0.60 16 7 C -0.04 -0.37 5.96 -27.88 -0.17 -0.53 16 8 C -0.23 -2.19 5.35 -105.05 -0.56 -2.75 16 9 C 0.05 0.52 11.96 -17.37 -0.21 0.31 16 10 N -0.30 -3.39 12.57 30.62 0.39 -3.01 16 11 N -0.38 -3.43 4.01 -68.16 -0.27 -3.71 16 12 C 0.10 0.49 11.47 59.85 0.69 1.18 16 13 C 0.06 0.49 11.40 -17.23 -0.20 0.30 16 14 N -0.60 -7.97 2.49 -173.93 -0.43 -8.40 16 15 C 0.08 0.86 9.40 59.85 0.56 1.43 16 16 C 0.54 9.73 7.69 -10.98 -0.08 9.65 16 17 O -0.53 -11.26 15.19 5.56 0.08 -11.17 16 18 C -0.12 -2.33 4.71 36.01 0.17 -2.16 16 19 S -0.14 -3.71 18.55 -107.50 -1.99 -5.71 16 20 C -0.52 -15.02 10.04 30.94 0.31 -14.71 16 21 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 22 C 0.09 2.78 5.50 -17.43 -0.10 2.69 16 23 N -0.88 -26.79 13.97 55.49 0.78 -26.02 16 24 Si 0.86 21.99 27.74 -169.99 -4.71 17.28 16 25 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 27 H -0.23 -6.01 6.74 56.52 0.38 -5.63 16 28 H 0.06 0.45 6.66 -51.93 -0.35 0.11 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.63 7.84 -51.93 -0.41 0.22 16 32 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.35 4.01 8.73 -39.29 -0.34 3.67 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.18 1.38 8.06 -52.49 -0.42 0.96 16 39 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 41 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.17 1.02 8.06 -52.48 -0.42 0.60 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.07 0.77 6.45 -51.93 -0.33 0.44 16 45 H 0.06 0.52 6.43 -51.93 -0.33 0.19 16 46 H 0.09 1.72 7.41 -51.91 -0.38 1.34 16 47 H 0.10 1.83 8.10 -51.92 -0.42 1.41 16 48 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 408.42 15.07 6.15 6.15 Total: -1.00 -36.06 408.42 -8.20 -44.26 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -8.00 Total: 1.50 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: 0.52 Total: -3.27 kcal Atomic # 7 Polarization: -48.79 SS G_CDS: -0.25 Total: -49.04 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: 0.08 Total: -11.17 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.71 Total: 17.28 kcal Atomic # 16 Polarization: -3.71 SS G_CDS: -1.99 Total: -5.71 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -36.06 -8.20 -44.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666853749.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.905 kcal (2) G-P(sol) polarization free energy of solvation -36.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds