Wall clock time and date at job start Sat Apr 11 2020 06:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46769 * 2 1 4 4 N 1.46506 * 109.47115 * 119.99463 * 2 1 3 5 5 C 1.36929 * 120.00089 * 275.00509 * 4 2 1 6 6 H 1.08005 * 120.00197 * 359.97438 * 5 4 2 7 7 C 1.38819 * 119.99944 * 180.02562 * 5 4 2 8 8 N 1.31615 * 119.99857 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99901 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47038 * 90.00373 * 9 7 5 11 11 H 1.48503 * 109.47416 * 209.99950 * 9 7 5 12 12 H 1.48498 * 109.47480 * 329.99982 * 9 7 5 13 13 C 1.52994 * 109.47304 * 239.99998 * 2 1 3 14 14 H 1.09003 * 110.91309 * 299.72447 * 13 2 1 15 15 C 1.55159 * 111.00276 * 175.83001 * 13 2 1 16 16 C 1.54324 * 102.93813 * 206.41996 * 15 13 2 17 17 N 1.47023 * 107.40501 * 22.11488 * 16 15 13 18 18 C 1.34776 * 125.65263 * 181.10015 * 17 16 15 19 19 O 1.21586 * 120.00330 * 184.87383 * 18 17 16 20 20 C 1.47512 * 119.99430 * 4.87303 * 18 17 16 21 21 C 1.38673 * 120.34250 * 313.08724 * 20 18 17 22 22 C 1.38992 * 120.62829 * 179.72161 * 21 20 18 23 23 C 1.36214 * 121.14479 * 0.56272 * 22 21 20 24 24 C 1.40692 * 120.17086 * 359.72340 * 23 22 21 25 25 N 1.33756 * 120.98281 * 179.97438 * 24 23 22 26 26 C 1.31322 * 119.73558 * 180.02562 * 25 24 23 27 27 C 1.39651 * 120.68501 * 359.97438 * 26 25 24 28 28 N 1.31443 * 120.63700 * 0.02562 * 27 26 25 29 29 C 1.33491 * 119.72718 * 359.97438 * 28 27 26 30 30 C 1.47750 * 108.52669 * 1.18169 * 17 16 15 31 31 H 1.09008 * 109.46766 * 174.87854 * 1 2 3 32 32 H 1.09000 * 109.47414 * 294.87538 * 1 2 3 33 33 H 1.08997 * 109.47286 * 54.88519 * 1 2 3 34 34 H 0.97006 * 119.99743 * 95.00194 * 4 2 1 35 35 H 0.97004 * 120.00040 * 179.97438 * 8 7 5 36 36 H 1.09003 * 110.72113 * 88.06016 * 15 13 2 37 37 H 1.08996 * 110.72184 * 324.77855 * 15 13 2 38 38 H 1.08999 * 109.87972 * 141.60799 * 16 15 13 39 39 H 1.09003 * 109.88566 * 262.61849 * 16 15 13 40 40 H 1.07994 * 119.68327 * 0.02562 * 21 20 18 41 41 H 1.08000 * 119.42330 * 180.26555 * 22 21 20 42 42 H 1.08003 * 119.91605 * 179.70090 * 23 22 21 43 43 H 1.08002 * 119.66041 * 179.97438 * 26 25 24 44 44 H 1.07999 * 119.68104 * 179.97438 * 27 26 25 45 45 H 1.09006 * 110.28659 * 216.94675 * 30 17 16 46 46 H 1.08994 * 110.53069 * 94.67723 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 1.1963 5 6 2.1490 -0.0074 2.3758 6 1 1.8925 1.0407 2.4241 7 6 2.6123 -0.6616 3.5091 8 7 2.9254 -1.9386 3.4501 9 14 2.7912 0.2706 5.1180 10 1 1.5238 0.1793 5.8866 11 1 3.8962 -0.3224 5.9135 12 1 3.0959 1.6958 4.8332 13 6 2.0400 -0.7212 -1.2492 14 1 1.6938 -1.7546 -1.2705 15 6 3.5875 -0.6513 -1.3388 16 6 3.8514 -0.7693 -2.8547 17 7 2.6214 -0.3603 -3.5485 18 6 2.4408 -0.3448 -4.8840 19 8 1.4097 0.0971 -5.3530 20 6 3.4941 -0.8640 -5.7766 21 6 4.8168 -0.4915 -5.5901 22 6 5.8149 -0.9816 -6.4241 23 6 5.5227 -1.8284 -7.4502 24 6 4.1936 -2.2284 -7.6803 25 7 3.8882 -3.0588 -8.6835 26 6 2.6393 -3.4158 -8.8763 27 6 1.6248 -2.9378 -8.0441 28 7 1.9014 -2.1209 -7.0521 29 6 3.1639 -1.7443 -6.8371 30 6 1.6196 0.0320 -2.5358 31 1 -0.3633 -1.0237 -0.0917 32 1 -0.3634 0.4323 0.9323 33 1 -0.3634 0.5911 -0.8406 34 1 2.2491 -1.6317 1.1528 35 1 3.2494 -2.3956 4.2419 36 1 4.0428 -1.4837 -0.8022 37 1 3.9533 0.3017 -0.9567 38 1 4.6736 -0.1130 -3.1400 39 1 4.0952 -1.8007 -3.1095 40 1 5.0745 0.1819 -4.7861 41 1 6.8392 -0.6821 -6.2585 42 1 6.3133 -2.1935 -8.0891 43 1 2.3941 -4.0860 -9.6869 44 1 0.6031 -3.2416 -8.2176 45 1 0.6232 -0.2796 -2.8494 46 1 1.6449 1.1090 -2.3703 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672234879.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:09 Heat of formation + Delta-G solvation = 55.446454 kcal Electronic energy + Delta-G solvation = -28820.372935 eV Core-core repulsion = 24903.583591 eV Total energy + Delta-G solvation = -3916.789344 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.82064 -40.02093 -37.97533 -37.40152 -35.21305 -35.02464 -32.55204 -31.34485 -31.23966 -30.27513 -29.20441 -27.44731 -25.90672 -24.91712 -24.51766 -23.74171 -22.37578 -21.45556 -19.80192 -19.64658 -19.23493 -18.24736 -17.35239 -17.12953 -16.71323 -16.06813 -15.60797 -15.41616 -15.26945 -14.88146 -14.52780 -14.29368 -14.03700 -13.70210 -13.48147 -13.18953 -12.97270 -12.70523 -12.48201 -12.34206 -12.26972 -12.17847 -12.04185 -11.96675 -11.87040 -11.69886 -11.21915 -10.90102 -10.71852 -10.59267 -10.37338 -10.22742 -10.11093 -9.87057 -9.65391 -9.39127 -9.34877 -8.96639 -8.92660 -8.58606 -6.98074 -5.78624 -3.06928 -0.32100 0.16595 1.38404 2.28667 2.69364 2.98279 3.41871 3.47567 3.48629 3.62273 3.66402 3.76500 3.89420 4.27316 4.32729 4.53020 4.56366 4.65263 4.77300 4.80074 4.84151 4.96688 5.10739 5.25351 5.30867 5.37220 5.48632 5.52644 5.57603 5.68010 5.75202 5.78988 5.87952 5.90979 5.97465 6.06334 6.17534 6.21134 6.23980 6.37216 6.45087 6.57850 6.64445 6.86655 6.90799 7.09791 7.37585 7.50013 7.68731 8.12361 8.39917 9.51423 10.08591 10.43660 11.44021 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021153 B = 0.002311 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.386453 B =12113.423112 C =12626.717996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.186 3.814 3 H 0.050 0.950 4 N -0.722 5.722 5 C -0.235 4.235 6 H 0.070 0.930 7 C -0.014 4.014 8 N -0.933 5.933 9 Si 0.905 3.095 10 H -0.291 1.291 11 H -0.292 1.292 12 H -0.282 1.282 13 C -0.102 4.102 14 H 0.081 0.919 15 C -0.115 4.115 16 C 0.093 3.907 17 N -0.613 5.613 18 C 0.578 3.422 19 O -0.515 6.515 20 C -0.085 4.085 21 C -0.067 4.067 22 C -0.102 4.102 23 C -0.066 4.066 24 C 0.074 3.926 25 N -0.425 5.425 26 C 0.076 3.924 27 C 0.079 3.921 28 N -0.405 5.405 29 C 0.111 3.889 30 C 0.117 3.883 31 H 0.045 0.955 32 H 0.055 0.945 33 H 0.038 0.962 34 H 0.383 0.617 35 H 0.254 0.746 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.146 0.854 41 H 0.144 0.856 42 H 0.144 0.856 43 H 0.177 0.823 44 H 0.177 0.823 45 H 0.077 0.923 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.983 -1.301 -24.765 25.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.075 3.925 3 H 0.068 0.932 4 N -0.363 5.363 5 C -0.366 4.366 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.582 5.582 9 Si 0.736 3.264 10 H -0.218 1.218 11 H -0.219 1.219 12 H -0.208 1.208 13 C -0.122 4.122 14 H 0.099 0.901 15 C -0.153 4.153 16 C -0.029 4.029 17 N -0.347 5.347 18 C 0.365 3.635 19 O -0.391 6.391 20 C -0.090 4.090 21 C -0.087 4.087 22 C -0.121 4.121 23 C -0.085 4.085 24 C -0.050 4.050 25 N -0.139 5.139 26 C -0.100 4.100 27 C -0.096 4.096 28 N -0.119 5.119 29 C -0.014 4.014 30 C -0.005 4.005 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.057 0.943 34 H 0.217 0.783 35 H 0.064 0.936 36 H 0.106 0.894 37 H 0.099 0.901 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.164 0.836 41 H 0.162 0.838 42 H 0.162 0.838 43 H 0.194 0.806 44 H 0.194 0.806 45 H 0.096 0.904 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.586 -0.803 -24.825 25.258 hybrid contribution 0.107 -0.034 0.898 0.905 sum 4.693 -0.838 -23.928 24.398 Atomic orbital electron populations 1.22497 0.99227 1.00659 1.00464 1.20127 0.91809 0.95140 0.85383 0.93235 1.42369 1.78160 1.10665 1.05116 1.19214 1.36300 0.93847 0.87288 0.91226 1.24716 1.02286 0.95961 0.97979 1.69655 1.51016 1.08664 1.28835 0.86226 0.77282 0.78803 0.84090 1.21804 1.21850 1.20805 1.22677 0.95167 1.00306 0.94067 0.90099 1.22585 0.96477 1.04210 0.92035 1.22342 0.86732 0.99760 0.94107 1.48532 1.16148 1.65519 1.04475 1.17447 0.86370 0.79121 0.80573 1.90810 1.27811 1.45634 1.74809 1.19786 0.94210 0.98857 0.96113 1.21705 0.90814 0.97607 0.98618 1.20961 1.00228 0.96629 0.94326 1.20969 0.94066 0.96103 0.97385 1.19503 0.95070 0.96876 0.93599 1.68696 1.20569 1.08884 1.15710 1.24101 0.88853 0.97832 0.99174 1.24214 1.01808 0.92706 0.90883 1.68797 1.18517 1.08009 1.16543 1.19221 0.89947 0.96962 0.95274 1.22376 0.92150 0.99408 0.86562 0.93585 0.92543 0.94346 0.78309 0.93565 0.89383 0.90076 0.91498 0.91615 0.83619 0.83778 0.83831 0.80609 0.80613 0.90445 0.91054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.98 9.23 37.16 0.34 -2.63 16 2 C 0.19 3.45 2.40 -67.93 -0.16 3.28 16 3 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 4 N -0.72 -16.97 4.89 -53.42 -0.26 -17.24 16 5 C -0.24 -6.25 9.93 -15.06 -0.15 -6.40 16 6 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 7 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 8 N -0.93 -27.35 13.06 55.49 0.72 -26.62 16 9 Si 0.90 21.91 29.55 -169.99 -5.02 16.89 16 10 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 C -0.10 -1.58 2.63 -88.48 -0.23 -1.82 16 14 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 15 C -0.12 -1.61 6.20 -24.90 -0.15 -1.77 16 16 C 0.09 1.09 5.61 -3.06 -0.02 1.07 16 17 N -0.61 -8.57 3.34 -171.49 -0.57 -9.14 16 18 C 0.58 8.90 7.16 -12.48 -0.09 8.81 16 19 O -0.52 -9.72 16.76 5.29 0.09 -9.63 16 20 C -0.09 -1.09 5.46 -104.63 -0.57 -1.66 16 21 C -0.07 -0.62 8.51 -39.14 -0.33 -0.95 16 22 C -0.10 -0.72 9.93 -40.03 -0.40 -1.12 16 23 C -0.07 -0.55 9.97 -39.38 -0.39 -0.94 16 24 C 0.07 0.83 6.59 -84.81 -0.56 0.27 16 25 N -0.42 -4.41 10.46 -10.82 -0.11 -4.52 16 26 C 0.08 0.60 11.21 -17.24 -0.19 0.41 16 27 C 0.08 0.73 11.22 -17.19 -0.19 0.54 16 28 N -0.41 -5.54 9.45 -10.59 -0.10 -5.64 16 29 C 0.11 1.47 6.57 -84.53 -0.56 0.92 16 30 C 0.12 1.71 5.51 -2.35 -0.01 1.70 16 31 H 0.04 0.81 8.14 -51.92 -0.42 0.39 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.04 0.58 7.59 -51.93 -0.39 0.19 16 34 H 0.38 9.64 7.80 -40.82 -0.32 9.32 16 35 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 36 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 37 H 0.08 1.17 8.04 -51.93 -0.42 0.76 16 38 H 0.07 0.62 5.97 -51.93 -0.31 0.31 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.15 1.07 5.86 -52.49 -0.31 0.77 16 41 H 0.14 0.55 8.06 -52.49 -0.42 0.12 16 42 H 0.14 0.89 8.06 -52.48 -0.42 0.46 16 43 H 0.18 0.63 8.06 -52.49 -0.42 0.21 16 44 H 0.18 0.98 8.06 -52.49 -0.42 0.55 16 45 H 0.08 1.19 8.09 -51.93 -0.42 0.77 16 46 H 0.07 1.01 8.03 -51.93 -0.42 0.60 16 LS Contribution 380.98 15.07 5.74 5.74 Total: -1.00 -34.92 380.98 -9.64 -44.56 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -6.36 Total: 6.38 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: -3.77 Total: -0.77 kcal Atomic # 7 Polarization: -62.84 SS G_CDS: -0.32 Total: -63.16 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.09 Total: -9.63 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.92 -9.64 -44.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672234879.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.002 kcal (2) G-P(sol) polarization free energy of solvation -34.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds