Wall clock time and date at job start Sat Apr 11 2020 06:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.46982 * 2 1 4 4 N 1.46496 * 109.47058 * 120.00048 * 2 1 3 5 5 C 1.36934 * 120.00259 * 275.27483 * 4 2 1 6 6 H 1.08005 * 119.99925 * 359.72380 * 5 4 2 7 7 C 1.38811 * 120.00002 * 179.72646 * 5 4 2 8 8 N 1.31621 * 119.99842 * 180.02562 * 7 5 4 9 9 Si 1.86792 * 120.00145 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.47049 * 90.00309 * 9 7 5 11 11 H 1.48497 * 109.47280 * 209.99951 * 9 7 5 12 12 H 1.48495 * 109.47384 * 330.00280 * 9 7 5 13 13 C 1.53003 * 109.46812 * 240.00193 * 2 1 3 14 14 H 1.09000 * 110.88346 * 300.37168 * 13 2 1 15 15 C 1.55152 * 111.00168 * 176.45282 * 13 2 1 16 16 C 1.54329 * 102.94219 * 206.42351 * 15 13 2 17 17 N 1.47023 * 107.26708 * 22.18943 * 16 15 13 18 18 C 1.34780 * 125.64722 * 181.02153 * 17 16 15 19 19 O 1.21548 * 120.00498 * 185.29134 * 18 17 16 20 20 C 1.47866 * 119.99468 * 5.29689 * 18 17 16 21 21 C 1.40624 * 119.75366 * 171.47887 * 20 18 17 22 22 C 1.35728 * 120.83805 * 179.73243 * 21 20 18 23 23 C 1.40708 * 120.08076 * 0.50807 * 22 21 20 24 24 N 1.33792 * 120.85787 * 179.70404 * 23 22 21 25 25 C 1.31340 * 119.76196 * 180.02562 * 24 23 22 26 26 C 1.39757 * 120.70958 * 0.02562 * 25 24 23 27 27 N 1.31281 * 120.67549 * 0.02562 * 26 25 24 28 28 C 1.33832 * 119.73398 * 359.97438 * 27 26 25 29 29 C 1.38406 * 119.75858 * 351.74231 * 20 18 17 30 30 C 1.47419 * 108.70630 * 1.06518 * 17 16 15 31 31 H 1.09001 * 109.47700 * 182.45007 * 1 2 3 32 32 H 1.09006 * 109.46683 * 302.44952 * 1 2 3 33 33 H 1.09002 * 109.47427 * 62.44769 * 1 2 3 34 34 H 0.97005 * 120.00205 * 94.99534 * 4 2 1 35 35 H 0.97002 * 119.99751 * 180.02562 * 8 7 5 36 36 H 1.09004 * 110.72177 * 324.78318 * 15 13 2 37 37 H 1.08999 * 110.72470 * 88.06248 * 15 13 2 38 38 H 1.09000 * 109.87783 * 262.77542 * 16 15 13 39 39 H 1.08996 * 109.88331 * 141.61128 * 16 15 13 40 40 H 1.08004 * 119.57906 * 359.96837 * 21 20 18 41 41 H 1.08004 * 119.96247 * 180.25485 * 22 21 20 42 42 H 1.07995 * 119.64514 * 180.02562 * 25 24 23 43 43 H 1.08003 * 119.66270 * 180.02562 * 26 25 24 44 44 H 1.07999 * 120.25378 * 359.97438 * 29 20 18 45 45 H 1.09002 * 110.36600 * 217.03539 * 30 17 16 46 46 H 1.08996 * 110.46379 * 94.75784 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1438 -0.0089 2.3771 6 1 1.8870 1.0390 2.4257 7 6 2.6011 -0.6648 3.5118 8 7 2.7212 -0.0096 4.6471 9 14 3.0447 -2.4773 3.4281 10 1 4.4789 -2.6199 3.0705 11 1 2.7989 -3.1087 4.7495 12 1 2.2090 -3.1444 2.3976 13 6 2.0400 -0.7212 -1.2493 14 1 1.6840 -1.7511 -1.2759 15 6 3.5883 -0.6648 -1.3309 16 6 3.8590 -0.7795 -2.8459 17 7 2.6353 -0.3547 -3.5413 18 6 2.4595 -0.3297 -4.8773 19 8 1.4379 0.1316 -5.3474 20 6 3.5094 -0.8635 -5.7712 21 6 3.2511 -1.0015 -7.1466 22 6 4.2007 -1.4840 -7.9879 23 6 5.4595 -1.8640 -7.4869 24 7 6.4048 -2.3470 -8.3013 25 6 7.5721 -2.6956 -7.8105 26 6 7.8390 -2.5682 -6.4446 27 7 6.9275 -2.0979 -5.6251 28 6 5.7303 -1.7359 -6.1012 29 6 4.7373 -1.2289 -5.2472 30 6 1.6328 0.0405 -2.5353 31 1 -0.3634 -1.0267 0.0439 32 1 -0.3633 0.5514 0.8673 33 1 -0.3634 0.4754 -0.9111 34 1 2.2490 -1.6318 1.1526 35 1 3.0411 -0.4678 5.4400 36 1 3.9607 0.2835 -0.9433 37 1 4.0336 -1.5031 -0.7951 38 1 4.0922 -1.8127 -3.1036 39 1 4.6885 -0.1296 -3.1245 40 1 2.2862 -0.7164 -7.5391 41 1 3.9885 -1.5802 -9.0425 42 1 8.3340 -3.0849 -8.4696 43 1 8.8049 -2.8597 -6.0593 44 1 4.9302 -1.1249 -4.1897 45 1 0.6353 -0.2611 -2.8549 46 1 1.6668 1.1166 -2.3656 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672247379.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:36 Heat of formation + Delta-G solvation = 77.378913 kcal Electronic energy + Delta-G solvation = -28700.904576 eV Core-core repulsion = 24785.066296 eV Total energy + Delta-G solvation = -3915.838281 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.89996 -40.48152 -38.28454 -37.24031 -35.65156 -35.17737 -32.70468 -31.53504 -31.22629 -30.61820 -29.69933 -27.77570 -26.33060 -25.14406 -24.26392 -23.43188 -22.51815 -21.46643 -20.59538 -19.92356 -19.09931 -18.32459 -17.59941 -17.37893 -16.83989 -16.25816 -15.81595 -15.47292 -15.14210 -14.95990 -14.62949 -14.28144 -14.16481 -13.89773 -13.76452 -13.40693 -13.21616 -12.86103 -12.56089 -12.50478 -12.34725 -12.19661 -12.18262 -12.13062 -12.11289 -11.81171 -11.41415 -11.02868 -10.88210 -10.65640 -10.50923 -10.29597 -10.22263 -9.97372 -9.61644 -9.52980 -9.45493 -9.05915 -8.97707 -8.82880 -7.31810 -5.80109 -3.15964 -0.39529 -0.00395 1.37193 1.96135 2.68263 2.91705 3.33715 3.35964 3.42579 3.49934 3.58727 3.63581 3.77892 4.09900 4.29590 4.43217 4.53340 4.55495 4.61028 4.68167 4.75595 4.85396 4.91419 5.07028 5.19009 5.25782 5.30943 5.41070 5.49706 5.56481 5.58114 5.67875 5.71735 5.76844 5.78738 5.87369 6.02889 6.05159 6.14645 6.16668 6.28556 6.37155 6.44161 6.74638 6.76971 6.96772 7.23260 7.26102 7.87451 7.95727 8.38745 9.16930 9.89309 10.08795 11.38242 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015113 B = 0.002596 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.310673 B =10782.083085 C =12309.697087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.191 3.809 3 H 0.059 0.941 4 N -0.746 5.746 5 C -0.241 4.241 6 H 0.090 0.910 7 C 0.005 3.995 8 N -0.934 5.934 9 Si 0.883 3.117 10 H -0.284 1.284 11 H -0.292 1.292 12 H -0.277 1.277 13 C -0.107 4.107 14 H 0.082 0.918 15 C -0.121 4.121 16 C 0.082 3.918 17 N -0.607 5.607 18 C 0.570 3.430 19 O -0.533 6.533 20 C -0.104 4.104 21 C -0.050 4.050 22 C -0.091 4.091 23 C 0.092 3.908 24 N -0.429 5.429 25 C 0.084 3.916 26 C 0.073 3.927 27 N -0.416 5.416 28 C 0.069 3.931 29 C -0.081 4.081 30 C 0.115 3.885 31 H 0.046 0.954 32 H 0.058 0.942 33 H 0.041 0.959 34 H 0.360 0.640 35 H 0.259 0.741 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.149 0.851 41 H 0.146 0.854 42 H 0.177 0.823 43 H 0.178 0.822 44 H 0.182 0.818 45 H 0.081 0.919 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.453 -5.253 -26.415 28.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.081 3.919 3 H 0.077 0.923 4 N -0.389 5.389 5 C -0.371 4.371 6 H 0.108 0.892 7 C -0.191 4.191 8 N -0.582 5.582 9 Si 0.713 3.287 10 H -0.211 1.211 11 H -0.219 1.219 12 H -0.204 1.204 13 C -0.127 4.127 14 H 0.100 0.900 15 C -0.159 4.159 16 C -0.040 4.040 17 N -0.340 5.340 18 C 0.359 3.641 19 O -0.411 6.411 20 C -0.109 4.109 21 C -0.071 4.071 22 C -0.111 4.111 23 C -0.032 4.032 24 N -0.143 5.143 25 C -0.092 4.092 26 C -0.103 4.103 27 N -0.130 5.130 28 C -0.054 4.054 29 C -0.100 4.100 30 C -0.007 4.007 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.060 0.940 34 H 0.193 0.807 35 H 0.069 0.931 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.167 0.833 41 H 0.164 0.836 42 H 0.194 0.806 43 H 0.195 0.805 44 H 0.199 0.801 45 H 0.099 0.901 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 7.666 -4.722 -26.504 27.991 hybrid contribution 0.569 -1.485 0.075 1.592 sum 8.235 -6.207 -26.429 28.369 Atomic orbital electron populations 1.22472 0.98691 1.01185 1.00519 1.20099 0.92007 0.95468 0.84336 0.92264 1.42736 1.79872 1.09365 1.06914 1.19043 1.37006 0.95510 0.85519 0.89199 1.24662 1.01527 0.97380 0.95537 1.69699 1.52728 1.35593 1.00139 0.86578 0.78387 0.86866 0.76840 1.21078 1.21851 1.20371 1.22734 0.95183 1.00376 0.94442 0.89991 1.22693 0.96415 1.04618 0.92128 1.22702 0.87231 0.99825 0.94228 1.48435 1.16341 1.64466 1.04724 1.17756 0.86425 0.79226 0.80659 1.90794 1.29115 1.46399 1.74770 1.20023 0.94281 1.01944 0.94651 1.21014 1.00147 0.94679 0.91228 1.20705 0.90391 0.98952 1.01028 1.19738 0.95080 0.97709 0.90714 1.68741 1.00873 1.07493 1.37193 1.24177 0.94748 0.95018 0.95276 1.24134 0.99544 0.95153 0.91428 1.68697 1.00066 1.06565 1.37636 1.19491 0.93276 1.00418 0.92258 1.22948 0.90569 0.93538 1.02921 1.22368 0.92074 0.99780 0.86446 0.93489 0.92257 0.94005 0.80702 0.93064 0.89410 0.89508 0.90359 0.90177 0.83308 0.83618 0.80606 0.80497 0.80139 0.90060 0.90572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.77 9.35 37.16 0.35 -2.42 16 2 C 0.19 3.28 2.40 -67.93 -0.16 3.12 16 3 H 0.06 1.06 8.07 -51.93 -0.42 0.64 16 4 N -0.75 -16.18 4.68 -53.43 -0.25 -16.43 16 5 C -0.24 -6.42 10.41 -15.06 -0.16 -6.58 16 6 H 0.09 2.59 8.06 -52.48 -0.42 2.17 16 7 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 8 N -0.93 -28.60 13.97 55.49 0.78 -27.83 16 9 Si 0.88 21.29 27.73 -169.99 -4.71 16.58 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 12 H -0.28 -6.29 6.52 56.52 0.37 -5.92 16 13 C -0.11 -1.47 2.63 -88.47 -0.23 -1.70 16 14 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 15 C -0.12 -1.50 6.18 -24.90 -0.15 -1.66 16 16 C 0.08 0.86 4.87 -3.06 -0.01 0.84 16 17 N -0.61 -7.46 3.33 -177.31 -0.59 -8.05 16 18 C 0.57 7.56 7.80 -12.32 -0.10 7.46 16 19 O -0.53 -8.54 16.64 5.32 0.09 -8.45 16 20 C -0.10 -1.16 5.87 -105.00 -0.62 -1.78 16 21 C -0.05 -0.49 9.49 -39.58 -0.38 -0.87 16 22 C -0.09 -0.84 9.95 -39.55 -0.39 -1.23 16 23 C 0.09 0.95 6.59 -84.73 -0.56 0.40 16 24 N -0.43 -4.05 10.46 -10.74 -0.11 -4.17 16 25 C 0.08 0.53 11.22 -17.19 -0.19 0.34 16 26 C 0.07 0.49 11.22 -17.22 -0.19 0.29 16 27 N -0.42 -4.15 10.46 -10.81 -0.11 -4.26 16 28 C 0.07 0.75 6.58 -84.81 -0.56 0.19 16 29 C -0.08 -0.85 8.57 -38.69 -0.33 -1.18 16 30 C 0.12 1.48 5.43 -2.53 -0.01 1.47 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.04 0.58 7.25 -51.93 -0.38 0.20 16 34 H 0.36 7.72 5.66 -40.82 -0.23 7.49 16 35 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 36 H 0.09 1.16 8.04 -51.93 -0.42 0.74 16 37 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.08 0.74 6.69 -51.93 -0.35 0.39 16 39 H 0.08 0.74 6.78 -51.93 -0.35 0.38 16 40 H 0.15 1.34 7.64 -52.48 -0.40 0.94 16 41 H 0.15 1.04 8.06 -52.48 -0.42 0.61 16 42 H 0.18 0.40 8.06 -52.49 -0.42 -0.03 16 43 H 0.18 0.49 8.06 -52.48 -0.42 0.07 16 44 H 0.18 1.73 2.71 -59.82 -0.16 1.57 16 45 H 0.08 1.07 7.95 -51.93 -0.41 0.65 16 46 H 0.08 0.97 8.03 -51.93 -0.42 0.55 16 LS Contribution 373.98 15.07 5.64 5.64 Total: -1.00 -34.20 373.98 -9.17 -43.37 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -6.09 Total: 6.89 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: -3.80 Total: -3.28 kcal Atomic # 7 Polarization: -60.45 SS G_CDS: -0.29 Total: -60.74 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: 0.09 Total: -8.45 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.71 Total: 16.58 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.20 -9.17 -43.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672247379.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.746 kcal (2) G-P(sol) polarization free energy of solvation -34.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds