Wall clock time and date at job start Sat Apr 11 2020 06:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.46982 * 2 1 4 4 N 1.46496 * 109.47058 * 120.00048 * 2 1 3 5 5 C 1.36934 * 120.00259 * 275.27483 * 4 2 1 6 6 H 1.08005 * 119.99925 * 359.72380 * 5 4 2 7 7 C 1.38811 * 120.00002 * 179.72646 * 5 4 2 8 8 N 1.31621 * 119.99842 * 180.02562 * 7 5 4 9 9 Si 1.86792 * 120.00145 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.47049 * 90.00309 * 9 7 5 11 11 H 1.48497 * 109.47280 * 209.99951 * 9 7 5 12 12 H 1.48495 * 109.47384 * 330.00280 * 9 7 5 13 13 C 1.53003 * 109.46812 * 240.00193 * 2 1 3 14 14 H 1.09000 * 110.88346 * 300.37168 * 13 2 1 15 15 C 1.55152 * 111.00168 * 176.45282 * 13 2 1 16 16 C 1.54329 * 102.94219 * 206.42351 * 15 13 2 17 17 N 1.47023 * 107.26708 * 22.18943 * 16 15 13 18 18 C 1.34780 * 125.64722 * 181.02153 * 17 16 15 19 19 O 1.21548 * 120.00498 * 185.29134 * 18 17 16 20 20 C 1.47866 * 119.99468 * 5.29689 * 18 17 16 21 21 C 1.40624 * 119.75366 * 171.47887 * 20 18 17 22 22 C 1.35728 * 120.83805 * 179.73243 * 21 20 18 23 23 C 1.40708 * 120.08076 * 0.50807 * 22 21 20 24 24 N 1.33792 * 120.85787 * 179.70404 * 23 22 21 25 25 C 1.31340 * 119.76196 * 180.02562 * 24 23 22 26 26 C 1.39757 * 120.70958 * 0.02562 * 25 24 23 27 27 N 1.31281 * 120.67549 * 0.02562 * 26 25 24 28 28 C 1.33832 * 119.73398 * 359.97438 * 27 26 25 29 29 C 1.38406 * 119.75858 * 351.74231 * 20 18 17 30 30 C 1.47419 * 108.70630 * 1.06518 * 17 16 15 31 31 H 1.09001 * 109.47700 * 182.45007 * 1 2 3 32 32 H 1.09006 * 109.46683 * 302.44952 * 1 2 3 33 33 H 1.09002 * 109.47427 * 62.44769 * 1 2 3 34 34 H 0.97005 * 120.00205 * 94.99534 * 4 2 1 35 35 H 0.97002 * 119.99751 * 180.02562 * 8 7 5 36 36 H 1.09004 * 110.72177 * 324.78318 * 15 13 2 37 37 H 1.08999 * 110.72470 * 88.06248 * 15 13 2 38 38 H 1.09000 * 109.87783 * 262.77542 * 16 15 13 39 39 H 1.08996 * 109.88331 * 141.61128 * 16 15 13 40 40 H 1.08004 * 119.57906 * 359.96837 * 21 20 18 41 41 H 1.08004 * 119.96247 * 180.25485 * 22 21 20 42 42 H 1.07995 * 119.64514 * 180.02562 * 25 24 23 43 43 H 1.08003 * 119.66270 * 180.02562 * 26 25 24 44 44 H 1.07999 * 120.25378 * 359.97438 * 29 20 18 45 45 H 1.09002 * 110.36600 * 217.03539 * 30 17 16 46 46 H 1.08996 * 110.46379 * 94.75784 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1438 -0.0089 2.3771 6 1 1.8870 1.0390 2.4257 7 6 2.6011 -0.6648 3.5118 8 7 2.7212 -0.0096 4.6471 9 14 3.0447 -2.4773 3.4281 10 1 4.4789 -2.6199 3.0705 11 1 2.7989 -3.1087 4.7495 12 1 2.2090 -3.1444 2.3976 13 6 2.0400 -0.7212 -1.2493 14 1 1.6840 -1.7511 -1.2759 15 6 3.5883 -0.6648 -1.3309 16 6 3.8590 -0.7795 -2.8459 17 7 2.6353 -0.3547 -3.5413 18 6 2.4595 -0.3297 -4.8773 19 8 1.4379 0.1316 -5.3474 20 6 3.5094 -0.8635 -5.7712 21 6 3.2511 -1.0015 -7.1466 22 6 4.2007 -1.4840 -7.9879 23 6 5.4595 -1.8640 -7.4869 24 7 6.4048 -2.3470 -8.3013 25 6 7.5721 -2.6956 -7.8105 26 6 7.8390 -2.5682 -6.4446 27 7 6.9275 -2.0979 -5.6251 28 6 5.7303 -1.7359 -6.1012 29 6 4.7373 -1.2289 -5.2472 30 6 1.6328 0.0405 -2.5353 31 1 -0.3634 -1.0267 0.0439 32 1 -0.3633 0.5514 0.8673 33 1 -0.3634 0.4754 -0.9111 34 1 2.2490 -1.6318 1.1526 35 1 3.0411 -0.4678 5.4400 36 1 3.9607 0.2835 -0.9433 37 1 4.0336 -1.5031 -0.7951 38 1 4.0922 -1.8127 -3.1036 39 1 4.6885 -0.1296 -3.1245 40 1 2.2862 -0.7164 -7.5391 41 1 3.9885 -1.5802 -9.0425 42 1 8.3340 -3.0849 -8.4696 43 1 8.8049 -2.8597 -6.0593 44 1 4.9302 -1.1249 -4.1897 45 1 0.6353 -0.2611 -2.8549 46 1 1.6668 1.1166 -2.3656 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672247379.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:35 Heat of formation + Delta-G solvation = 53.902612 kcal Electronic energy + Delta-G solvation = -28701.922585 eV Core-core repulsion = 24785.066296 eV Total energy + Delta-G solvation = -3916.856290 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.56802 -41.42315 -39.35709 -38.05784 -37.06156 -35.88609 -34.37439 -32.76343 -31.92015 -31.63177 -31.15162 -28.95109 -27.12315 -26.10911 -25.46696 -24.50853 -23.57155 -22.60341 -21.56151 -21.27606 -19.88654 -19.48663 -19.00093 -18.12357 -17.69798 -17.30851 -16.76403 -16.53325 -16.16319 -15.84559 -15.75646 -15.31805 -15.21143 -15.02321 -14.81632 -14.65065 -14.29838 -14.19731 -14.02100 -13.54974 -13.49666 -13.42073 -13.06414 -12.92075 -12.84464 -12.83212 -12.74921 -12.52611 -12.34261 -12.01083 -11.90257 -11.71041 -11.64229 -11.35328 -11.24451 -10.93717 -10.15173 -10.14194 -9.80234 -9.76559 -9.27822 -7.96934 -5.29688 -1.06325 -0.64577 0.68455 1.22581 1.41389 1.44880 1.52037 1.72291 2.08618 2.53157 2.87057 2.91430 3.05701 3.15372 3.23019 3.34877 3.48438 3.50792 3.72173 3.80675 3.89830 3.96856 4.04976 4.12686 4.15716 4.29741 4.38138 4.43849 4.55215 4.56092 4.61424 4.64326 4.69352 4.83367 4.86564 4.92363 4.96996 5.02347 5.12847 5.13603 5.16173 5.27471 5.35921 5.49671 5.57849 5.83391 6.18187 6.26649 6.28833 6.64381 6.87917 7.13862 7.89627 8.09260 9.24883 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015113 B = 0.002596 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.310673 B =10782.083085 C =12309.697087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.187 3.813 3 H 0.049 0.951 4 N -0.745 5.745 5 C -0.219 4.219 6 H 0.055 0.945 7 C -0.067 4.067 8 N -0.988 5.988 9 Si 0.953 3.047 10 H -0.274 1.274 11 H -0.304 1.304 12 H -0.251 1.251 13 C -0.097 4.097 14 H 0.090 0.910 15 C -0.120 4.120 16 C 0.088 3.912 17 N -0.607 5.607 18 C 0.570 3.430 19 O -0.569 6.569 20 C -0.117 4.117 21 C -0.058 4.058 22 C -0.088 4.088 23 C 0.075 3.925 24 N -0.454 5.454 25 C 0.097 3.903 26 C 0.084 3.916 27 N -0.444 5.444 28 C 0.048 3.952 29 C -0.077 4.077 30 C 0.119 3.881 31 H 0.050 0.950 32 H 0.032 0.968 33 H 0.069 0.931 34 H 0.366 0.634 35 H 0.255 0.745 36 H 0.077 0.923 37 H 0.090 0.910 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.151 0.849 41 H 0.163 0.837 42 H 0.221 0.779 43 H 0.219 0.781 44 H 0.188 0.812 45 H 0.080 0.920 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.561 -7.595 -29.080 31.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.078 3.922 3 H 0.067 0.933 4 N -0.389 5.389 5 C -0.351 4.351 6 H 0.073 0.927 7 C -0.258 4.258 8 N -0.639 5.639 9 Si 0.781 3.219 10 H -0.200 1.200 11 H -0.231 1.231 12 H -0.176 1.176 13 C -0.117 4.117 14 H 0.108 0.892 15 C -0.158 4.158 16 C -0.033 4.033 17 N -0.339 5.339 18 C 0.360 3.640 19 O -0.449 6.449 20 C -0.122 4.122 21 C -0.078 4.078 22 C -0.107 4.107 23 C -0.048 4.048 24 N -0.168 5.168 25 C -0.079 4.079 26 C -0.093 4.093 27 N -0.158 5.158 28 C -0.074 4.074 29 C -0.096 4.096 30 C -0.003 4.003 31 H 0.069 0.931 32 H 0.051 0.949 33 H 0.088 0.912 34 H 0.199 0.801 35 H 0.064 0.936 36 H 0.096 0.904 37 H 0.108 0.892 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.169 0.831 41 H 0.180 0.820 42 H 0.238 0.762 43 H 0.236 0.764 44 H 0.204 0.796 45 H 0.098 0.902 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 9.741 -7.059 -29.223 31.602 hybrid contribution 0.061 -0.713 0.793 1.069 sum 9.802 -7.773 -28.430 31.061 Atomic orbital electron populations 1.22362 0.97766 1.01306 1.00755 1.20257 0.92521 0.95087 0.84299 0.93324 1.42689 1.80008 1.09538 1.06646 1.18972 1.34592 0.94263 0.87234 0.92696 1.25470 1.02734 1.02417 0.95154 1.69893 1.55168 1.37738 1.01085 0.85438 0.78815 0.80903 0.76779 1.20032 1.23144 1.17557 1.22521 0.96167 1.00204 0.92786 0.89208 1.22670 0.95255 1.04238 0.93619 1.22773 0.86862 1.01206 0.92469 1.48445 1.16711 1.64143 1.04551 1.18062 0.86390 0.78623 0.80876 1.90766 1.30642 1.48134 1.75378 1.19878 0.94139 1.03402 0.94816 1.21049 1.00561 0.95267 0.90947 1.20880 0.89978 0.98128 1.01701 1.19930 0.95778 0.98169 0.90916 1.68805 1.01899 1.08627 1.37446 1.24992 0.94379 0.92540 0.95991 1.24926 1.00190 0.92727 0.91459 1.68724 1.00346 1.07951 1.38764 1.19581 0.93926 1.01353 0.92527 1.22957 0.90282 0.93200 1.03188 1.22251 0.92321 0.99596 0.86173 0.93108 0.94866 0.91207 0.80093 0.93580 0.90449 0.89165 0.88707 0.88614 0.83120 0.81957 0.76245 0.76446 0.79595 0.90164 0.90686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.21 9.35 71.98 0.67 -4.54 16 2 C 0.19 6.31 2.40 44.99 0.11 6.41 16 3 H 0.05 1.76 8.07 -2.39 -0.02 1.74 16 4 N -0.75 -31.80 4.68 -322.94 -1.51 -33.31 16 5 C -0.22 -11.90 10.41 84.03 0.87 -11.03 16 6 H 0.06 3.31 8.06 -2.91 -0.02 3.29 16 7 C -0.07 -3.82 5.50 84.86 0.47 -3.35 16 8 N -0.99 -62.40 13.97 21.65 0.30 -62.09 16 9 Si 0.95 43.82 27.73 68.60 1.90 45.72 16 10 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 11 H -0.30 -14.54 7.11 99.48 0.71 -13.84 16 12 H -0.25 -10.30 6.52 99.48 0.65 -9.65 16 13 C -0.10 -2.50 2.63 -9.40 -0.02 -2.53 16 14 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 15 C -0.12 -2.78 6.18 31.78 0.20 -2.59 16 16 C 0.09 1.67 4.87 86.73 0.42 2.10 16 17 N -0.61 -14.23 3.33 -833.17 -2.77 -17.00 16 18 C 0.57 14.87 7.80 86.79 0.68 15.55 16 19 O -0.57 -18.34 16.64 -3.87 -0.06 -18.40 16 20 C -0.12 -2.57 5.87 -20.11 -0.12 -2.68 16 21 C -0.06 -1.12 9.49 22.27 0.21 -0.91 16 22 C -0.09 -1.53 9.95 22.29 0.22 -1.31 16 23 C 0.07 1.45 6.59 40.32 0.27 1.71 16 24 N -0.45 -7.44 10.46 -187.89 -1.96 -9.40 16 25 C 0.10 0.86 11.22 85.13 0.95 1.81 16 26 C 0.08 0.79 11.22 85.14 0.95 1.74 16 27 N -0.44 -7.75 10.46 -188.10 -1.97 -9.72 16 28 C 0.05 0.97 6.58 40.25 0.27 1.23 16 29 C -0.08 -1.53 8.57 22.85 0.20 -1.34 16 30 C 0.12 2.92 5.43 86.86 0.47 3.39 16 31 H 0.05 1.58 8.14 -2.39 -0.02 1.57 16 32 H 0.03 1.21 8.14 -2.38 -0.02 1.20 16 33 H 0.07 1.84 7.25 -2.39 -0.02 1.82 16 34 H 0.37 14.89 5.66 -92.70 -0.52 14.36 16 35 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 36 H 0.08 1.97 8.04 -2.39 -0.02 1.95 16 37 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.10 1.55 6.69 -2.39 -0.02 1.54 16 39 H 0.10 1.57 6.78 -2.39 -0.02 1.55 16 40 H 0.15 2.75 7.64 -2.91 -0.02 2.73 16 41 H 0.16 2.12 8.06 -2.91 -0.02 2.10 16 42 H 0.22 -0.19 8.06 -2.91 -0.02 -0.22 16 43 H 0.22 0.07 8.06 -2.91 -0.02 0.05 16 44 H 0.19 3.25 2.71 -9.80 -0.03 3.22 16 45 H 0.08 2.01 7.95 -2.39 -0.02 1.99 16 46 H 0.07 1.86 8.03 -2.39 -0.02 1.84 16 Total: -1.00 -76.90 373.98 1.16 -75.73 By element: Atomic # 1 Polarization: 24.37 SS G_CDS: 0.42 Total: 24.79 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: 6.82 Total: 3.68 kcal Atomic # 7 Polarization: -123.61 SS G_CDS: -7.91 Total: -131.52 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: -0.06 Total: -18.40 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.90 Total: 45.72 kcal Total: -76.90 1.16 -75.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672247379.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.633 kcal (2) G-P(sol) polarization free energy of solvation -76.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds