Wall clock time and date at job start Sat Apr 11 2020 06:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 109.47420 * 2 1 4 4 C 1.34940 * 126.03757 * 124.99460 * 3 2 1 5 5 C 1.35317 * 107.74438 * 179.77616 * 4 3 2 6 6 C 1.39872 * 107.92021 * 0.23195 * 5 4 3 7 7 C 1.50701 * 125.89724 * 179.97438 * 6 5 4 8 8 N 1.46898 * 109.47287 * 95.00139 * 7 6 5 9 9 C 1.46896 * 111.00255 * 180.02562 * 8 7 6 10 10 H 1.09000 * 109.47260 * 34.99566 * 9 8 7 11 11 C 1.53001 * 109.46962 * 274.99892 * 9 8 7 12 12 C 1.53002 * 109.47351 * 154.99776 * 9 8 7 13 13 N 1.46499 * 109.47234 * 304.99926 * 12 9 8 14 14 C 1.46500 * 120.00044 * 270.00154 * 13 12 9 15 15 C 1.34779 * 119.99875 * 89.99445 * 13 12 9 16 16 O 1.21277 * 120.00261 * 0.02562 * 15 13 12 17 17 C 1.50700 * 119.99959 * 179.97438 * 15 13 12 18 18 S 1.80999 * 109.47281 * 180.02562 * 17 15 13 19 19 C 1.76192 * 100.00061 * 180.02562 * 18 17 15 20 20 H 1.08000 * 120.00328 * 0.02562 * 19 18 17 21 21 C 1.38798 * 120.00379 * 179.97438 * 19 18 17 22 22 N 1.31630 * 119.99499 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00581 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.46918 * 0.02562 * 23 21 19 25 25 H 1.48495 * 109.47402 * 120.00045 * 23 21 19 26 26 H 1.48501 * 109.47454 * 240.00265 * 23 21 19 27 27 N 1.30838 * 108.20312 * 359.97438 * 6 5 4 28 28 H 1.09000 * 109.47085 * 59.99765 * 1 2 3 29 29 H 1.09001 * 109.47104 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47042 * 299.99805 * 1 2 3 31 31 H 1.09005 * 109.47317 * 240.00222 * 2 1 3 32 32 H 1.08999 * 109.47532 * 120.00525 * 2 1 3 33 33 H 1.08002 * 126.13053 * 0.04913 * 4 3 2 34 34 H 1.08004 * 126.04102 * 180.24995 * 5 4 3 35 35 H 1.08998 * 109.46884 * 215.00109 * 7 6 5 36 36 H 1.09002 * 109.47503 * 335.00288 * 7 6 5 37 37 H 1.00902 * 111.00349 * 56.04107 * 8 7 6 38 38 H 1.08997 * 109.47426 * 179.97438 * 11 9 8 39 39 H 1.09000 * 109.46867 * 299.99915 * 11 9 8 40 40 H 1.08999 * 109.47179 * 59.99819 * 11 9 8 41 41 H 1.08999 * 109.46977 * 64.99734 * 12 9 8 42 42 H 1.08999 * 109.47297 * 184.99367 * 12 9 8 43 43 H 1.08997 * 109.47026 * 89.99355 * 14 13 12 44 44 H 1.09000 * 109.46999 * 209.99843 * 14 13 12 45 45 H 1.09005 * 109.46567 * 329.99892 * 14 13 12 46 46 H 1.08997 * 109.47016 * 300.00843 * 17 15 13 47 47 H 1.09004 * 109.46425 * 60.00564 * 17 15 13 48 48 H 0.97007 * 119.99795 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8731 1.9211 0.8939 5 6 3.0756 3.2122 0.5431 6 6 2.3146 3.4716 -0.6015 7 6 2.2403 4.7866 -1.3338 8 7 3.2020 4.7838 -2.4443 9 6 3.1579 6.0531 -3.1822 10 1 2.9600 6.8701 -2.4883 11 6 2.0460 5.9947 -4.2315 12 6 4.5017 6.2870 -3.8755 13 7 5.5795 6.2241 -2.8853 14 6 6.0056 7.4401 -2.1881 15 6 6.1791 5.0476 -2.6157 16 8 5.8266 4.0410 -3.1931 17 6 7.2883 4.9829 -1.5975 18 16 7.8843 3.2793 -1.4618 19 6 9.1370 3.4897 -0.2409 20 1 9.3253 4.4678 0.1767 21 6 9.8814 2.3984 0.1850 22 7 9.6517 1.2063 -0.3236 23 14 11.2091 2.6213 1.4799 24 1 11.2681 4.0480 1.8878 25 1 10.8927 1.7815 2.6630 26 1 12.5216 2.2117 0.9189 27 7 1.6785 2.3755 -0.9265 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.3193 1.4125 1.7357 34 1 3.7126 3.9176 1.0560 35 1 1.2331 4.9277 -1.7258 36 1 2.4803 5.5988 -0.6476 37 1 3.0406 4.0012 -3.0604 38 1 2.0129 6.9367 -4.7788 39 1 2.2439 5.1777 -4.9254 40 1 1.0887 5.8281 -3.7376 41 1 4.6585 5.5187 -4.6325 42 1 4.5002 7.2687 -4.3491 43 1 5.4212 7.5595 -1.2758 44 1 7.0629 7.3622 -1.9348 45 1 5.8495 8.3034 -2.8351 46 1 8.1073 5.6302 -1.9109 47 1 6.9126 5.3150 -0.6296 48 1 10.1716 0.4434 -0.0257 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676305326.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:51 Heat of formation + Delta-G solvation = 47.305526 kcal Electronic energy + Delta-G solvation = -27825.634260 eV Core-core repulsion = 24043.935850 eV Total energy + Delta-G solvation = -3781.698410 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.93769 -39.26506 -37.02232 -34.93465 -34.24874 -32.34246 -31.76908 -29.88288 -29.26927 -28.79385 -27.03925 -25.64958 -25.46989 -24.89279 -22.84637 -21.08927 -20.80156 -19.47350 -18.89507 -17.51948 -16.97485 -16.35293 -15.85824 -15.44130 -15.38277 -15.08749 -14.73470 -14.50585 -14.26983 -14.22090 -13.79461 -13.38996 -13.29784 -12.95364 -12.82677 -12.66331 -12.56015 -12.36531 -12.31911 -12.11758 -12.09662 -11.99847 -11.81687 -11.63099 -11.45998 -11.24508 -11.02425 -10.92289 -10.89925 -10.67916 -10.36657 -9.68589 -9.09159 -8.99179 -8.97313 -8.36646 -8.28036 -8.05826 -7.95279 -6.35294 -6.13324 -3.80522 2.11509 2.65564 3.01552 3.17311 3.25269 3.32528 3.37562 3.51340 3.82858 4.29650 4.39448 4.51090 4.84077 4.87914 4.95201 4.98409 5.07600 5.11689 5.18122 5.21470 5.23543 5.28787 5.32057 5.46115 5.48277 5.50995 5.61738 5.62017 5.71418 5.74073 5.79215 5.87546 5.88393 5.97421 6.02854 6.11688 6.13041 6.14715 6.32231 6.33328 6.87533 6.93721 7.21347 7.24321 7.59823 7.67837 7.91259 7.95546 8.43871 8.99344 9.32184 10.93994 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.007687 B = 0.004117 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3641.557383 B = 6799.557654 C = 9674.089931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.131 3.869 3 N -0.373 5.373 4 C 0.054 3.946 5 C -0.245 4.245 6 C 0.079 3.921 7 C 0.148 3.852 8 N -0.659 5.659 9 C 0.069 3.931 10 H 0.076 0.924 11 C -0.181 4.181 12 C 0.131 3.869 13 N -0.615 5.615 14 C 0.084 3.916 15 C 0.547 3.453 16 O -0.505 6.505 17 C -0.146 4.146 18 S -0.059 6.059 19 C -0.531 4.531 20 H 0.070 0.930 21 C 0.073 3.927 22 N -0.869 5.869 23 Si 0.915 3.085 24 H -0.272 1.272 25 H -0.281 1.281 26 H -0.281 1.281 27 N -0.295 5.295 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.058 0.942 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.171 0.829 34 H 0.145 0.855 35 H 0.036 0.964 36 H 0.084 0.916 37 H 0.351 0.649 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.055 0.945 41 H 0.080 0.920 42 H 0.072 0.928 43 H 0.049 0.951 44 H 0.071 0.929 45 H 0.061 0.939 46 H 0.081 0.919 47 H 0.084 0.916 48 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.050 8.484 -0.940 19.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.010 3.990 3 N -0.156 5.156 4 C -0.091 4.091 5 C -0.274 4.274 6 C -0.087 4.087 7 C 0.017 3.983 8 N -0.292 5.292 9 C -0.043 4.043 10 H 0.094 0.906 11 C -0.241 4.241 12 C 0.006 3.994 13 N -0.351 5.351 14 C -0.060 4.060 15 C 0.334 3.666 16 O -0.378 6.378 17 C -0.297 4.297 18 S 0.168 5.832 19 C -0.679 4.679 20 H 0.089 0.911 21 C -0.136 4.136 22 N -0.505 5.505 23 Si 0.741 3.259 24 H -0.196 1.196 25 H -0.207 1.207 26 H -0.207 1.207 27 N -0.119 5.119 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.102 0.898 32 H 0.112 0.888 33 H 0.189 0.811 34 H 0.162 0.838 35 H 0.054 0.946 36 H 0.102 0.898 37 H 0.171 0.829 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.099 0.901 42 H 0.090 0.910 43 H 0.067 0.933 44 H 0.089 0.911 45 H 0.080 0.920 46 H 0.099 0.901 47 H 0.103 0.897 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -18.832 6.269 -2.202 19.970 hybrid contribution 1.107 1.546 1.828 2.638 sum -17.725 7.815 -0.374 19.375 Atomic orbital electron populations 1.22038 0.94187 1.02508 1.03300 1.21629 0.95598 0.77954 1.03843 1.48533 1.36097 1.09707 1.21293 1.22517 0.95304 0.94903 0.96426 1.21308 1.07908 0.96818 1.01361 1.22016 0.96390 0.94546 0.95782 1.20150 0.94024 0.91261 0.92878 1.60381 1.51969 1.04011 1.12818 1.22004 0.94625 0.92946 0.94696 0.90603 1.22466 0.99177 1.02441 0.99990 1.21369 0.85473 1.01482 0.91031 1.47550 1.36734 1.08237 1.42598 1.21685 1.00713 0.86788 0.96783 1.19912 0.81931 0.82283 0.82477 1.90636 1.63396 1.33457 1.50303 1.23515 0.98775 1.07386 1.00011 1.85371 1.43809 1.00356 1.53688 1.22936 1.21518 0.97310 1.26165 0.91133 1.24956 0.97277 0.94499 0.96831 1.70045 1.39650 0.99171 1.41601 0.86179 0.80765 0.78315 0.80610 1.19643 1.20691 1.20671 1.77122 1.24702 0.96612 1.13451 0.91267 0.90974 0.92323 0.89846 0.88766 0.81148 0.83754 0.94587 0.89809 0.82947 0.92108 0.92103 0.92638 0.90116 0.90989 0.93262 0.91075 0.91981 0.90088 0.89747 0.92461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 10.10 37.16 0.38 -1.06 16 2 C 0.13 1.37 7.23 -4.04 -0.03 1.34 16 3 N -0.37 -5.40 3.68 -61.36 -0.23 -5.62 16 4 C 0.05 0.78 11.45 -17.23 -0.20 0.58 16 5 C -0.24 -3.88 10.74 -40.01 -0.43 -4.31 16 6 C 0.08 1.25 6.73 -82.40 -0.55 0.69 16 7 C 0.15 1.94 6.04 -4.98 -0.03 1.91 16 8 N -0.66 -9.41 4.51 -107.99 -0.49 -9.90 16 9 C 0.07 0.76 2.89 -67.71 -0.20 0.57 16 10 H 0.08 0.77 7.80 -51.93 -0.40 0.36 16 11 C -0.18 -1.65 9.16 37.16 0.34 -1.31 16 12 C 0.13 1.58 5.24 -4.04 -0.02 1.56 16 13 N -0.62 -8.94 2.78 -181.57 -0.50 -9.45 16 14 C 0.08 0.93 10.29 59.85 0.62 1.54 16 15 C 0.55 10.73 7.03 -10.98 -0.08 10.66 16 16 O -0.51 -11.69 14.59 5.56 0.08 -11.61 16 17 C -0.15 -3.12 4.71 36.01 0.17 -2.95 16 18 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 19 C -0.53 -15.39 9.50 30.94 0.29 -15.09 16 20 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 21 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 22 N -0.87 -26.53 13.22 55.49 0.73 -25.79 16 23 Si 0.91 21.66 29.55 -169.99 -5.02 16.64 16 24 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 27 N -0.30 -4.79 12.42 33.67 0.42 -4.37 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.09 0.75 8.07 -51.93 -0.42 0.33 16 33 H 0.17 1.97 8.06 -52.49 -0.42 1.55 16 34 H 0.14 2.20 8.06 -52.48 -0.42 1.77 16 35 H 0.04 0.43 7.44 -51.93 -0.39 0.05 16 36 H 0.08 1.01 8.05 -51.93 -0.42 0.59 16 37 H 0.35 5.65 8.47 -39.29 -0.33 5.31 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 40 H 0.05 0.50 7.45 -51.93 -0.39 0.11 16 41 H 0.08 1.15 7.42 -51.93 -0.39 0.76 16 42 H 0.07 0.66 7.89 -51.93 -0.41 0.25 16 43 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.07 0.82 6.44 -51.93 -0.33 0.49 16 45 H 0.06 0.51 7.89 -51.93 -0.41 0.10 16 46 H 0.08 1.62 7.40 -51.92 -0.38 1.23 16 47 H 0.08 1.72 8.11 -51.91 -0.42 1.30 16 48 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 410.88 15.07 6.19 6.19 Total: -1.00 -36.68 410.88 -8.91 -45.58 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -8.04 Total: 6.03 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: 0.16 Total: -3.85 kcal Atomic # 7 Polarization: -55.06 SS G_CDS: -0.07 Total: -55.13 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.08 Total: -11.61 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -36.68 -8.91 -45.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676305326.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.889 kcal (2) G-P(sol) polarization free energy of solvation -36.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds