Wall clock time and date at job start Sat Apr 11 2020 06:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 109.47420 * 2 1 4 4 C 1.34940 * 126.03757 * 124.99460 * 3 2 1 5 5 C 1.35317 * 107.74438 * 179.77616 * 4 3 2 6 6 C 1.39872 * 107.92021 * 0.23195 * 5 4 3 7 7 C 1.50701 * 125.89724 * 179.97438 * 6 5 4 8 8 N 1.46898 * 109.47287 * 95.00139 * 7 6 5 9 9 C 1.46896 * 111.00255 * 180.02562 * 8 7 6 10 10 H 1.09000 * 109.47260 * 34.99566 * 9 8 7 11 11 C 1.53001 * 109.46962 * 274.99892 * 9 8 7 12 12 C 1.53002 * 109.47351 * 154.99776 * 9 8 7 13 13 N 1.46499 * 109.47234 * 304.99926 * 12 9 8 14 14 C 1.46500 * 120.00044 * 270.00154 * 13 12 9 15 15 C 1.34779 * 119.99875 * 89.99445 * 13 12 9 16 16 O 1.21277 * 120.00261 * 0.02562 * 15 13 12 17 17 C 1.50700 * 119.99959 * 179.97438 * 15 13 12 18 18 S 1.80999 * 109.47281 * 180.02562 * 17 15 13 19 19 C 1.76192 * 100.00061 * 180.02562 * 18 17 15 20 20 H 1.08000 * 120.00328 * 0.02562 * 19 18 17 21 21 C 1.38798 * 120.00379 * 179.97438 * 19 18 17 22 22 N 1.31630 * 119.99499 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00581 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.46918 * 0.02562 * 23 21 19 25 25 H 1.48495 * 109.47402 * 120.00045 * 23 21 19 26 26 H 1.48501 * 109.47454 * 240.00265 * 23 21 19 27 27 N 1.30838 * 108.20312 * 359.97438 * 6 5 4 28 28 H 1.09000 * 109.47085 * 59.99765 * 1 2 3 29 29 H 1.09001 * 109.47104 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47042 * 299.99805 * 1 2 3 31 31 H 1.09005 * 109.47317 * 240.00222 * 2 1 3 32 32 H 1.08999 * 109.47532 * 120.00525 * 2 1 3 33 33 H 1.08002 * 126.13053 * 0.04913 * 4 3 2 34 34 H 1.08004 * 126.04102 * 180.24995 * 5 4 3 35 35 H 1.08998 * 109.46884 * 215.00109 * 7 6 5 36 36 H 1.09002 * 109.47503 * 335.00288 * 7 6 5 37 37 H 1.00902 * 111.00349 * 56.04107 * 8 7 6 38 38 H 1.08997 * 109.47426 * 179.97438 * 11 9 8 39 39 H 1.09000 * 109.46867 * 299.99915 * 11 9 8 40 40 H 1.08999 * 109.47179 * 59.99819 * 11 9 8 41 41 H 1.08999 * 109.46977 * 64.99734 * 12 9 8 42 42 H 1.08999 * 109.47297 * 184.99367 * 12 9 8 43 43 H 1.08997 * 109.47026 * 89.99355 * 14 13 12 44 44 H 1.09000 * 109.46999 * 209.99843 * 14 13 12 45 45 H 1.09005 * 109.46567 * 329.99892 * 14 13 12 46 46 H 1.08997 * 109.47016 * 300.00843 * 17 15 13 47 47 H 1.09004 * 109.46425 * 60.00564 * 17 15 13 48 48 H 0.97007 * 119.99795 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8731 1.9211 0.8939 5 6 3.0756 3.2122 0.5431 6 6 2.3146 3.4716 -0.6015 7 6 2.2403 4.7866 -1.3338 8 7 3.2020 4.7838 -2.4443 9 6 3.1579 6.0531 -3.1822 10 1 2.9600 6.8701 -2.4883 11 6 2.0460 5.9947 -4.2315 12 6 4.5017 6.2870 -3.8755 13 7 5.5795 6.2241 -2.8853 14 6 6.0056 7.4401 -2.1881 15 6 6.1791 5.0476 -2.6157 16 8 5.8266 4.0410 -3.1931 17 6 7.2883 4.9829 -1.5975 18 16 7.8843 3.2793 -1.4618 19 6 9.1370 3.4897 -0.2409 20 1 9.3253 4.4678 0.1767 21 6 9.8814 2.3984 0.1850 22 7 9.6517 1.2063 -0.3236 23 14 11.2091 2.6213 1.4799 24 1 11.2681 4.0480 1.8878 25 1 10.8927 1.7815 2.6630 26 1 12.5216 2.2117 0.9189 27 7 1.6785 2.3755 -0.9265 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.3193 1.4125 1.7357 34 1 3.7126 3.9176 1.0560 35 1 1.2331 4.9277 -1.7258 36 1 2.4803 5.5988 -0.6476 37 1 3.0406 4.0012 -3.0604 38 1 2.0129 6.9367 -4.7788 39 1 2.2439 5.1777 -4.9254 40 1 1.0887 5.8281 -3.7376 41 1 4.6585 5.5187 -4.6325 42 1 4.5002 7.2687 -4.3491 43 1 5.4212 7.5595 -1.2758 44 1 7.0629 7.3622 -1.9348 45 1 5.8495 8.3034 -2.8351 46 1 8.1073 5.6302 -1.9109 47 1 6.9126 5.3150 -0.6296 48 1 10.1716 0.4434 -0.0257 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676305326.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:50 Heat of formation + Delta-G solvation = 22.463329 kcal Electronic energy + Delta-G solvation = -27826.711498 eV Core-core repulsion = 24043.935850 eV Total energy + Delta-G solvation = -3782.775648 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.05552 -40.60274 -38.14067 -36.13108 -35.26390 -34.54123 -32.76855 -31.11233 -30.62427 -29.84275 -28.05284 -27.62588 -26.60522 -26.09139 -23.76544 -22.13554 -21.85128 -20.65915 -20.31497 -19.40273 -18.05103 -17.76182 -17.05985 -16.84542 -16.65271 -16.47140 -16.15521 -15.81557 -15.48913 -15.35504 -15.13875 -14.55599 -14.48584 -14.31856 -14.18846 -13.79609 -13.69273 -13.36192 -13.21539 -13.15655 -13.12153 -13.05793 -13.00640 -12.92164 -12.86880 -12.72321 -12.53211 -12.32640 -12.17328 -11.83879 -11.63343 -11.50459 -11.11907 -10.54851 -10.22327 -10.15552 -9.50628 -9.43562 -9.03254 -8.57364 -8.30269 -6.05744 0.97811 1.32164 1.41873 1.50910 1.63875 1.66624 1.84442 1.97394 2.30005 2.42120 3.03281 3.35986 3.42894 3.58179 3.90257 3.95590 4.01648 4.02434 4.09791 4.25649 4.27437 4.34077 4.35702 4.42457 4.49627 4.52980 4.58267 4.64227 4.70933 4.79818 4.81024 4.86668 4.89577 4.97452 5.01176 5.03947 5.07364 5.15183 5.22414 5.29482 5.45210 5.75073 5.83763 6.19618 6.23793 6.24437 6.44746 6.59883 6.80402 7.10922 7.54057 8.79050 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.007687 B = 0.004117 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3641.557383 B = 6799.557654 C = 9674.089931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.119 3.881 3 N -0.376 5.376 4 C 0.050 3.950 5 C -0.275 4.275 6 C 0.068 3.932 7 C 0.154 3.846 8 N -0.679 5.679 9 C 0.072 3.928 10 H 0.095 0.905 11 C -0.172 4.172 12 C 0.127 3.873 13 N -0.603 5.603 14 C 0.076 3.924 15 C 0.544 3.456 16 O -0.551 6.551 17 C -0.120 4.120 18 S -0.146 6.146 19 C -0.543 4.543 20 H 0.077 0.923 21 C 0.015 3.985 22 N -0.912 5.912 23 Si 0.995 3.005 24 H -0.257 1.257 25 H -0.273 1.273 26 H -0.274 1.274 27 N -0.322 5.322 28 H 0.049 0.951 29 H 0.100 0.900 30 H 0.057 0.943 31 H 0.078 0.922 32 H 0.122 0.878 33 H 0.198 0.802 34 H 0.143 0.857 35 H 0.047 0.953 36 H 0.095 0.905 37 H 0.334 0.666 38 H 0.085 0.915 39 H 0.046 0.954 40 H 0.056 0.944 41 H 0.054 0.946 42 H 0.115 0.885 43 H 0.061 0.939 44 H 0.065 0.935 45 H 0.100 0.900 46 H 0.096 0.904 47 H 0.094 0.906 48 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.292 10.817 0.062 21.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.001 4.001 3 N -0.160 5.160 4 C -0.096 4.096 5 C -0.305 4.305 6 C -0.098 4.098 7 C 0.024 3.976 8 N -0.310 5.310 9 C -0.039 4.039 10 H 0.113 0.887 11 C -0.231 4.231 12 C 0.004 3.996 13 N -0.336 5.336 14 C -0.066 4.066 15 C 0.331 3.669 16 O -0.427 6.427 17 C -0.271 4.271 18 S 0.082 5.918 19 C -0.691 4.691 20 H 0.096 0.904 21 C -0.189 4.189 22 N -0.549 5.549 23 Si 0.817 3.183 24 H -0.181 1.181 25 H -0.198 1.198 26 H -0.200 1.200 27 N -0.146 5.146 28 H 0.068 0.932 29 H 0.118 0.882 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.140 0.860 33 H 0.214 0.786 34 H 0.161 0.839 35 H 0.065 0.935 36 H 0.113 0.887 37 H 0.152 0.848 38 H 0.104 0.896 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.133 0.867 43 H 0.080 0.920 44 H 0.083 0.917 45 H 0.119 0.881 46 H 0.114 0.886 47 H 0.112 0.888 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.107 8.667 -1.210 21.016 hybrid contribution 1.122 0.880 1.468 2.046 sum -17.985 9.547 0.258 20.364 Atomic orbital electron populations 1.21962 0.92826 1.03981 1.02214 1.22016 0.96806 0.76276 1.05007 1.48911 1.35761 1.10624 1.20662 1.22988 0.94846 0.94860 0.96918 1.21529 1.08964 0.97768 1.02244 1.22453 0.96096 0.95408 0.95888 1.20176 0.94439 0.90406 0.92626 1.60393 1.52652 1.04768 1.13180 1.22055 0.94594 0.91960 0.95260 0.88732 1.22356 0.98264 1.03203 0.99262 1.21632 0.85016 1.02900 0.90031 1.47509 1.36202 1.07595 1.42314 1.21979 1.00518 0.86205 0.97939 1.19647 0.81840 0.83399 0.81981 1.90625 1.64719 1.35476 1.51925 1.23338 0.99940 1.02406 1.01458 1.85542 1.44871 1.07093 1.54343 1.23228 1.21710 0.97880 1.26274 0.90436 1.26066 0.99800 0.93899 0.99168 1.70207 1.41079 1.00268 1.43321 0.84962 0.77060 0.79018 0.77260 1.18116 1.19829 1.19974 1.77052 1.25711 0.97305 1.14565 0.93204 0.88170 0.92433 0.90327 0.85959 0.78563 0.83924 0.93523 0.88683 0.84780 0.89625 0.93512 0.92491 0.92740 0.86728 0.92045 0.91652 0.88109 0.88619 0.88784 0.92165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 10.10 71.98 0.73 -1.86 16 2 C 0.12 2.45 7.23 86.38 0.62 3.07 16 3 N -0.38 -11.09 3.68 -348.05 -1.28 -12.37 16 4 C 0.05 1.48 11.45 83.54 0.96 2.43 16 5 C -0.28 -9.03 10.74 21.99 0.24 -8.79 16 6 C 0.07 2.19 6.73 43.10 0.29 2.48 16 7 C 0.15 4.03 6.04 85.56 0.52 4.55 16 8 N -0.68 -19.41 4.51 -495.58 -2.24 -21.65 16 9 C 0.07 1.46 2.89 44.92 0.13 1.59 16 10 H 0.09 1.59 7.80 -2.39 -0.02 1.57 16 11 C -0.17 -2.81 9.16 71.98 0.66 -2.15 16 12 C 0.13 2.82 5.24 86.38 0.45 3.28 16 13 N -0.60 -16.42 2.78 -846.76 -2.35 -18.77 16 14 C 0.08 1.42 10.29 127.77 1.31 2.73 16 15 C 0.54 21.46 7.03 87.66 0.62 22.08 16 16 O -0.55 -26.47 14.59 -3.02 -0.04 -26.51 16 17 C -0.12 -5.14 4.71 71.24 0.34 -4.80 16 18 S -0.15 -8.40 20.57 -56.49 -1.16 -9.57 16 19 C -0.54 -31.83 9.50 67.95 0.65 -31.19 16 20 H 0.08 4.27 7.80 -2.91 -0.02 4.25 16 21 C 0.02 0.88 5.49 84.86 0.47 1.34 16 22 N -0.91 -56.88 13.22 21.65 0.29 -56.59 16 23 Si 1.00 44.27 29.55 68.60 2.03 46.30 16 24 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 25 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 26 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 27 N -0.32 -10.81 12.42 -47.38 -0.59 -11.40 16 28 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 32 H 0.12 1.79 8.07 -2.39 -0.02 1.77 16 33 H 0.20 4.47 8.06 -2.91 -0.02 4.45 16 34 H 0.14 4.52 8.06 -2.91 -0.02 4.50 16 35 H 0.05 1.10 7.44 -2.39 -0.02 1.08 16 36 H 0.09 2.21 8.05 -2.39 -0.02 2.19 16 37 H 0.33 11.27 8.47 -89.69 -0.76 10.51 16 38 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.05 0.90 8.13 -2.39 -0.02 0.88 16 40 H 0.06 0.93 7.45 -2.39 -0.02 0.91 16 41 H 0.05 1.53 7.42 -2.39 -0.02 1.51 16 42 H 0.11 1.59 7.89 -2.39 -0.02 1.57 16 43 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.06 1.32 6.44 -2.39 -0.02 1.31 16 45 H 0.10 1.16 7.89 -2.38 -0.02 1.14 16 46 H 0.10 3.77 7.40 -2.40 -0.02 3.75 16 47 H 0.09 3.80 8.11 -2.39 -0.02 3.78 16 48 H 0.27 15.53 8.31 -92.70 -0.77 14.76 16 Total: -1.00 -84.05 410.88 2.81 -81.25 By element: Atomic # 1 Polarization: 34.36 SS G_CDS: 0.18 Total: 34.55 kcal Atomic # 6 Polarization: -13.21 SS G_CDS: 7.97 Total: -5.24 kcal Atomic # 7 Polarization: -114.61 SS G_CDS: -6.17 Total: -120.78 kcal Atomic # 8 Polarization: -26.47 SS G_CDS: -0.04 Total: -26.51 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Atomic # 16 Polarization: -8.40 SS G_CDS: -1.16 Total: -9.57 kcal Total: -84.05 2.81 -81.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676305326.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.711 kcal (2) G-P(sol) polarization free energy of solvation -84.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds