Wall clock time and date at job start Sat Apr 11 2020 06:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46902 * 110.99573 * 2 1 4 4 C 1.53000 * 109.47107 * 66.05001 * 3 2 1 5 5 C 1.50709 * 109.46977 * 179.97438 * 4 3 2 6 6 C 1.39872 * 126.03868 * 90.02008 * 5 4 3 7 7 N 1.30830 * 108.19782 * 179.97438 * 6 5 4 8 8 N 1.40079 * 108.20975 * 0.02562 * 7 6 5 9 9 C 1.46504 * 126.03860 * 179.97438 * 8 7 6 10 10 C 1.34949 * 107.92777 * 359.75600 * 8 7 6 11 11 C 1.46898 * 110.99888 * 236.04634 * 2 1 3 12 12 C 1.53000 * 109.47048 * 293.95182 * 11 2 1 13 13 N 1.46502 * 109.46834 * 180.02562 * 12 11 2 14 14 C 1.46500 * 120.00134 * 90.00006 * 13 12 11 15 15 C 1.34771 * 119.99922 * 270.00119 * 13 12 11 16 16 O 1.21286 * 119.99983 * 359.97438 * 15 13 12 17 17 C 1.50699 * 120.00051 * 180.02562 * 15 13 12 18 18 S 1.81005 * 109.47208 * 179.97438 * 17 15 13 19 19 C 1.76201 * 99.99956 * 179.97438 * 18 17 15 20 20 H 1.08007 * 119.99990 * 359.97438 * 19 18 17 21 21 C 1.38795 * 120.00065 * 179.97438 * 19 18 17 22 22 N 1.31635 * 120.00131 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 119.99837 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.47139 * 90.00253 * 23 21 19 25 25 H 1.48507 * 109.47281 * 210.00027 * 23 21 19 26 26 H 1.48502 * 109.47367 * 330.00124 * 23 21 19 27 27 H 1.09001 * 109.46544 * 183.95424 * 1 2 3 28 28 H 1.09001 * 109.47272 * 303.95030 * 1 2 3 29 29 H 1.09000 * 109.47033 * 63.95479 * 1 2 3 30 30 H 1.09001 * 109.46557 * 186.04354 * 3 2 1 31 31 H 1.08994 * 109.47575 * 306.04356 * 3 2 1 32 32 H 1.09001 * 109.46884 * 299.99153 * 4 3 2 33 33 H 1.09001 * 109.47688 * 59.99882 * 4 3 2 34 34 H 1.08001 * 125.89850 * 359.97438 * 6 5 4 35 35 H 1.08998 * 109.47110 * 89.97656 * 9 8 7 36 36 H 1.08993 * 109.47243 * 209.97416 * 9 8 7 37 37 H 1.08996 * 109.47280 * 329.97567 * 9 8 7 38 38 H 1.07996 * 126.13178 * 180.23829 * 10 8 7 39 39 H 1.08992 * 109.47062 * 53.95734 * 11 2 1 40 40 H 1.09003 * 109.46753 * 173.95421 * 11 2 1 41 41 H 1.09001 * 109.47085 * 300.00035 * 12 11 2 42 42 H 1.08993 * 109.47201 * 60.00475 * 12 11 2 43 43 H 1.09000 * 109.47194 * 89.99337 * 14 13 12 44 44 H 1.08997 * 109.47376 * 209.99740 * 14 13 12 45 45 H 1.09003 * 109.47171 * 329.99916 * 14 13 12 46 46 H 1.09006 * 109.47020 * 299.99726 * 17 15 13 47 47 H 1.09001 * 109.47494 * 59.99278 * 17 15 13 48 48 H 0.96998 * 119.99586 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0574 1.3183 5 6 2.1720 3.4642 1.3185 6 6 1.5022 4.6032 0.8597 7 7 2.2906 5.6344 1.0231 8 7 3.4890 5.1835 1.5912 9 6 4.6448 6.0144 1.9380 10 6 3.3891 3.8493 1.7673 11 6 1.9955 -0.7660 -1.1376 12 6 1.6315 -2.2426 -0.9703 13 7 2.1570 -3.0066 -2.1045 14 6 3.5020 -3.5836 -2.0388 15 6 1.4032 -3.1785 -3.2084 16 8 0.2895 -2.7011 -3.2626 17 6 1.9435 -3.9648 -4.3749 18 16 0.7041 -4.0175 -5.6929 19 6 1.5749 -4.9683 -6.8939 20 1 2.5739 -5.3206 -6.6830 21 6 0.9772 -5.2644 -8.1111 22 7 1.6276 -5.9751 -9.0081 23 14 -0.7507 -4.6556 -8.4756 24 1 -0.6793 -3.3187 -9.1183 25 1 -1.4288 -5.6089 -9.3905 26 1 -1.5180 -4.5552 -7.2081 27 1 -0.3632 -1.0253 0.0709 28 1 -0.3634 0.5739 0.8525 29 1 -0.3633 0.4512 -0.9233 30 1 3.0797 1.3444 -0.1082 31 1 1.5611 1.9274 -0.8309 32 1 0.5472 2.0845 1.4265 33 1 2.0658 1.5016 2.1492 34 1 0.5062 4.6273 0.4427 35 1 4.5420 6.3702 2.9631 36 1 5.5566 5.4243 1.8479 37 1 4.6955 6.8671 1.2609 38 1 4.1458 3.2042 2.1887 39 1 1.5612 -0.3872 -2.0627 40 1 3.0798 -0.6611 -1.1756 41 1 2.0659 -2.6213 -0.0451 42 1 0.5473 -2.3475 -0.9323 43 1 3.4460 -4.5892 -1.6220 44 1 3.9273 -3.6290 -3.0414 45 1 4.1335 -2.9619 -1.4041 46 1 2.8498 -3.4867 -4.7468 47 1 2.1745 -4.9802 -4.0529 48 1 1.2096 -6.1823 -9.8586 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698985645.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:09 Heat of formation + Delta-G solvation = 52.742925 kcal Electronic energy + Delta-G solvation = -26122.516558 eV Core-core repulsion = 22341.053932 eV Total energy + Delta-G solvation = -3781.462626 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.54597 -39.66562 -37.94933 -35.44282 -34.12580 -32.53851 -32.43603 -30.69902 -29.13537 -28.20509 -27.25577 -26.63549 -25.66135 -25.27056 -22.77503 -21.46344 -21.13099 -20.33678 -19.22911 -17.67791 -17.25567 -16.79311 -16.25913 -15.87958 -15.66790 -15.57005 -15.21349 -14.94307 -14.68609 -14.44718 -14.20647 -13.80590 -13.44913 -13.29385 -13.28874 -13.15225 -13.03265 -12.80197 -12.73537 -12.48222 -12.36966 -12.23780 -12.15294 -11.89634 -11.58512 -11.26013 -11.18763 -11.00725 -10.93257 -10.74160 -10.57133 -9.85513 -9.78811 -9.48332 -9.00190 -8.79526 -8.61377 -8.48921 -8.46821 -6.91719 -6.28832 -4.00482 1.52086 2.15196 2.43144 2.71133 2.93520 3.17767 3.33309 3.50819 3.57556 3.88546 4.14273 4.33279 4.44839 4.61826 4.66062 4.71768 4.74738 4.87118 4.92897 4.97221 5.00247 5.10171 5.11617 5.12372 5.23424 5.28401 5.34315 5.39893 5.43750 5.48766 5.52111 5.54255 5.67064 5.76041 5.77633 5.83315 5.87224 5.97511 6.00467 6.01747 6.30971 6.51969 6.62495 6.85888 6.88634 7.33467 7.44989 7.94228 8.41445 8.44489 9.17496 10.80351 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.018175 B = 0.001749 C = 0.001711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.196510 B =16008.983676 C =16359.460237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.540 5.540 3 C 0.061 3.939 4 C -0.035 4.035 5 C -0.234 4.234 6 C 0.053 3.947 7 N -0.300 5.300 8 N -0.379 5.379 9 C 0.102 3.898 10 C 0.057 3.943 11 C 0.040 3.960 12 C 0.122 3.878 13 N -0.623 5.623 14 C 0.079 3.921 15 C 0.531 3.469 16 O -0.518 6.518 17 C -0.121 4.121 18 S -0.144 6.144 19 C -0.521 4.521 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.880 5.880 23 Si 0.856 3.144 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.029 0.971 30 H 0.071 0.929 31 H 0.034 0.966 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.182 0.818 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.173 0.827 39 H 0.041 0.959 40 H 0.072 0.928 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.057 0.943 44 H 0.075 0.925 45 H 0.069 0.931 46 H 0.096 0.904 47 H 0.097 0.903 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.112 18.010 26.229 32.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.265 5.265 3 C -0.067 4.067 4 C -0.074 4.074 5 C -0.246 4.246 6 C -0.133 4.133 7 N -0.121 5.121 8 N -0.161 5.161 9 C -0.040 4.040 10 C -0.089 4.089 11 C -0.089 4.089 12 C -0.002 4.002 13 N -0.359 5.359 14 C -0.064 4.064 15 C 0.318 3.682 16 O -0.392 6.392 17 C -0.271 4.271 18 S 0.082 5.918 19 C -0.668 4.668 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.517 5.517 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.048 0.952 30 H 0.089 0.911 31 H 0.053 0.947 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.199 0.801 35 H 0.092 0.908 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.191 0.809 39 H 0.060 0.940 40 H 0.091 0.909 41 H 0.100 0.900 42 H 0.102 0.898 43 H 0.075 0.925 44 H 0.094 0.906 45 H 0.088 0.912 46 H 0.114 0.886 47 H 0.115 0.885 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.910 19.753 26.287 33.409 hybrid contribution 0.555 -0.887 -1.038 1.474 sum 6.466 18.866 25.250 32.176 Atomic orbital electron populations 1.22513 0.87212 1.02659 1.00730 1.61975 1.08282 1.13489 1.42732 1.22123 0.99952 0.87649 0.96939 1.19854 1.00683 0.89315 0.97551 1.20085 0.95758 0.96792 1.11918 1.23841 0.99908 0.89980 0.99612 1.77364 0.92566 1.23456 1.18706 1.48473 1.13289 1.05938 1.48431 1.21852 0.84463 0.95761 1.01904 1.22366 0.99233 0.85359 1.01966 1.22475 1.00054 0.94252 0.92102 1.21335 1.00833 0.89779 0.88212 1.47817 1.16883 1.54692 1.16516 1.21808 0.82898 0.98439 1.03289 1.20334 0.85078 0.79859 0.82897 1.90687 1.19344 1.48735 1.80468 1.23315 1.04143 1.02534 0.97152 1.84787 1.22587 1.71912 1.12508 1.22310 1.04833 1.38184 1.01499 0.89402 1.24708 0.98118 0.93674 0.94784 1.69941 1.37822 1.36888 1.07036 0.86739 0.84753 0.79450 0.80932 1.19239 1.19933 1.15919 0.91003 0.91149 0.95212 0.91075 0.94725 0.91028 0.90597 0.80145 0.90794 0.89436 0.89306 0.80947 0.94028 0.90909 0.89995 0.89770 0.92466 0.90615 0.91218 0.88579 0.88480 0.91956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.13 60.07 0.55 0.71 16 2 N -0.54 -5.22 4.76 -242.92 -1.16 -6.37 16 3 C 0.06 0.53 4.94 -3.82 -0.02 0.51 16 4 C -0.04 -0.25 5.63 -27.88 -0.16 -0.41 16 5 C -0.23 -1.88 5.35 -105.05 -0.56 -2.44 16 6 C 0.05 0.48 11.96 -17.37 -0.21 0.27 16 7 N -0.30 -3.15 12.57 30.62 0.39 -2.76 16 8 N -0.38 -3.03 4.01 -68.17 -0.27 -3.30 16 9 C 0.10 0.39 11.47 59.85 0.69 1.08 16 10 C 0.06 0.40 11.40 -17.22 -0.20 0.20 16 11 C 0.04 0.45 5.28 -3.82 -0.02 0.43 16 12 C 0.12 1.42 5.33 -4.04 -0.02 1.40 16 13 N -0.62 -8.36 2.87 -181.57 -0.52 -8.88 16 14 C 0.08 0.77 10.24 59.85 0.61 1.39 16 15 C 0.53 9.62 7.69 -10.99 -0.08 9.54 16 16 O -0.52 -11.21 15.44 5.55 0.09 -11.12 16 17 C -0.12 -2.37 4.71 36.01 0.17 -2.20 16 18 S -0.14 -3.68 18.55 -107.50 -1.99 -5.68 16 19 C -0.52 -15.03 10.04 30.94 0.31 -14.72 16 20 H 0.09 2.63 8.03 -52.48 -0.42 2.21 16 21 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 22 N -0.88 -26.56 13.97 55.49 0.78 -25.79 16 23 Si 0.86 21.88 27.74 -169.99 -4.71 17.16 16 24 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.24 -6.01 6.74 56.52 0.38 -5.63 16 27 H 0.07 0.72 6.47 -51.93 -0.34 0.38 16 28 H 0.07 0.55 6.30 -51.93 -0.33 0.22 16 29 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.60 7.93 -51.93 -0.41 0.19 16 31 H 0.03 0.34 8.12 -51.93 -0.42 -0.08 16 32 H 0.07 0.50 6.47 -51.93 -0.34 0.17 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.18 1.26 8.06 -52.49 -0.42 0.84 16 35 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 36 H 0.09 0.14 8.14 -51.93 -0.42 -0.29 16 37 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.17 0.69 8.06 -52.49 -0.42 0.26 16 39 H 0.04 0.58 8.12 -51.93 -0.42 0.16 16 40 H 0.07 0.74 7.93 -51.93 -0.41 0.33 16 41 H 0.08 0.79 8.07 -51.93 -0.42 0.37 16 42 H 0.08 1.13 5.83 -51.93 -0.30 0.83 16 43 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.08 0.76 6.44 -51.93 -0.33 0.43 16 45 H 0.07 0.52 8.07 -51.93 -0.42 0.10 16 46 H 0.10 1.75 7.40 -51.91 -0.38 1.37 16 47 H 0.10 1.78 8.11 -51.92 -0.42 1.36 16 48 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 406.13 15.07 6.12 6.12 Total: -1.00 -36.36 406.13 -8.24 -44.60 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -7.91 Total: -2.46 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: 0.96 Total: -1.52 kcal Atomic # 7 Polarization: -46.31 SS G_CDS: -0.79 Total: -47.11 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.09 Total: -11.12 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.71 Total: 17.16 kcal Atomic # 16 Polarization: -3.68 SS G_CDS: -1.99 Total: -5.68 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -36.36 -8.24 -44.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698985645.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.342 kcal (2) G-P(sol) polarization free energy of solvation -36.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds