Wall clock time and date at job start Sat Apr 11 2020 06:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46902 * 110.99573 * 2 1 4 4 C 1.53000 * 109.47107 * 66.05001 * 3 2 1 5 5 C 1.50709 * 109.46977 * 179.97438 * 4 3 2 6 6 C 1.39872 * 126.03868 * 90.02008 * 5 4 3 7 7 N 1.30830 * 108.19782 * 179.97438 * 6 5 4 8 8 N 1.40079 * 108.20975 * 0.02562 * 7 6 5 9 9 C 1.46504 * 126.03860 * 179.97438 * 8 7 6 10 10 C 1.34949 * 107.92777 * 359.75600 * 8 7 6 11 11 C 1.46898 * 110.99888 * 236.04634 * 2 1 3 12 12 C 1.53000 * 109.47048 * 293.95182 * 11 2 1 13 13 N 1.46502 * 109.46834 * 180.02562 * 12 11 2 14 14 C 1.46500 * 120.00134 * 90.00006 * 13 12 11 15 15 C 1.34771 * 119.99922 * 270.00119 * 13 12 11 16 16 O 1.21286 * 119.99983 * 359.97438 * 15 13 12 17 17 C 1.50699 * 120.00051 * 180.02562 * 15 13 12 18 18 S 1.81005 * 109.47208 * 179.97438 * 17 15 13 19 19 C 1.76201 * 99.99956 * 179.97438 * 18 17 15 20 20 H 1.08007 * 119.99990 * 359.97438 * 19 18 17 21 21 C 1.38795 * 120.00065 * 179.97438 * 19 18 17 22 22 N 1.31635 * 120.00131 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 119.99837 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.47139 * 90.00253 * 23 21 19 25 25 H 1.48507 * 109.47281 * 210.00027 * 23 21 19 26 26 H 1.48502 * 109.47367 * 330.00124 * 23 21 19 27 27 H 1.09001 * 109.46544 * 183.95424 * 1 2 3 28 28 H 1.09001 * 109.47272 * 303.95030 * 1 2 3 29 29 H 1.09000 * 109.47033 * 63.95479 * 1 2 3 30 30 H 1.09001 * 109.46557 * 186.04354 * 3 2 1 31 31 H 1.08994 * 109.47575 * 306.04356 * 3 2 1 32 32 H 1.09001 * 109.46884 * 299.99153 * 4 3 2 33 33 H 1.09001 * 109.47688 * 59.99882 * 4 3 2 34 34 H 1.08001 * 125.89850 * 359.97438 * 6 5 4 35 35 H 1.08998 * 109.47110 * 89.97656 * 9 8 7 36 36 H 1.08993 * 109.47243 * 209.97416 * 9 8 7 37 37 H 1.08996 * 109.47280 * 329.97567 * 9 8 7 38 38 H 1.07996 * 126.13178 * 180.23829 * 10 8 7 39 39 H 1.08992 * 109.47062 * 53.95734 * 11 2 1 40 40 H 1.09003 * 109.46753 * 173.95421 * 11 2 1 41 41 H 1.09001 * 109.47085 * 300.00035 * 12 11 2 42 42 H 1.08993 * 109.47201 * 60.00475 * 12 11 2 43 43 H 1.09000 * 109.47194 * 89.99337 * 14 13 12 44 44 H 1.08997 * 109.47376 * 209.99740 * 14 13 12 45 45 H 1.09003 * 109.47171 * 329.99916 * 14 13 12 46 46 H 1.09006 * 109.47020 * 299.99726 * 17 15 13 47 47 H 1.09001 * 109.47494 * 59.99278 * 17 15 13 48 48 H 0.96998 * 119.99586 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0574 1.3183 5 6 2.1720 3.4642 1.3185 6 6 1.5022 4.6032 0.8597 7 7 2.2906 5.6344 1.0231 8 7 3.4890 5.1835 1.5912 9 6 4.6448 6.0144 1.9380 10 6 3.3891 3.8493 1.7673 11 6 1.9955 -0.7660 -1.1376 12 6 1.6315 -2.2426 -0.9703 13 7 2.1570 -3.0066 -2.1045 14 6 3.5020 -3.5836 -2.0388 15 6 1.4032 -3.1785 -3.2084 16 8 0.2895 -2.7011 -3.2626 17 6 1.9435 -3.9648 -4.3749 18 16 0.7041 -4.0175 -5.6929 19 6 1.5749 -4.9683 -6.8939 20 1 2.5739 -5.3206 -6.6830 21 6 0.9772 -5.2644 -8.1111 22 7 1.6276 -5.9751 -9.0081 23 14 -0.7507 -4.6556 -8.4756 24 1 -0.6793 -3.3187 -9.1183 25 1 -1.4288 -5.6089 -9.3905 26 1 -1.5180 -4.5552 -7.2081 27 1 -0.3632 -1.0253 0.0709 28 1 -0.3634 0.5739 0.8525 29 1 -0.3633 0.4512 -0.9233 30 1 3.0797 1.3444 -0.1082 31 1 1.5611 1.9274 -0.8309 32 1 0.5472 2.0845 1.4265 33 1 2.0658 1.5016 2.1492 34 1 0.5062 4.6273 0.4427 35 1 4.5420 6.3702 2.9631 36 1 5.5566 5.4243 1.8479 37 1 4.6955 6.8671 1.2609 38 1 4.1458 3.2042 2.1887 39 1 1.5612 -0.3872 -2.0627 40 1 3.0798 -0.6611 -1.1756 41 1 2.0659 -2.6213 -0.0451 42 1 0.5473 -2.3475 -0.9323 43 1 3.4460 -4.5892 -1.6220 44 1 3.9273 -3.6290 -3.0414 45 1 4.1335 -2.9619 -1.4041 46 1 2.8498 -3.4867 -4.7468 47 1 2.1745 -4.9802 -4.0529 48 1 1.2096 -6.1823 -9.8586 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698985645.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:08 Heat of formation + Delta-G solvation = 27.646646 kcal Electronic energy + Delta-G solvation = -26123.604815 eV Core-core repulsion = 22341.053932 eV Total energy + Delta-G solvation = -3782.550883 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.10803 -40.94481 -38.82108 -36.61263 -34.70942 -34.67446 -33.20098 -31.81291 -30.03037 -29.10061 -27.96994 -27.86437 -27.39257 -26.12165 -23.62894 -22.03669 -21.92022 -20.92964 -20.62015 -19.55485 -18.17241 -17.75688 -17.37235 -17.09505 -16.84836 -16.51407 -16.30421 -16.17769 -15.57084 -15.37254 -15.25191 -15.01105 -14.90625 -14.35449 -14.28927 -13.98162 -13.78262 -13.63274 -13.60841 -13.44194 -13.36680 -13.21772 -13.06675 -12.99362 -12.87463 -12.74021 -12.64126 -12.36722 -11.90470 -11.83546 -11.77249 -11.35428 -11.17916 -10.95387 -10.52987 -10.37034 -9.77085 -9.38410 -9.24795 -9.01055 -8.52198 -6.23108 0.96935 0.97821 1.30171 1.45369 1.51591 1.53908 1.72106 1.81923 2.07480 2.24281 2.67898 2.86024 3.04857 3.60673 3.70672 3.93410 4.02866 4.12366 4.16974 4.18133 4.30168 4.33589 4.36773 4.44030 4.45177 4.50649 4.51871 4.61625 4.62993 4.69643 4.71599 4.77985 4.83450 4.88827 4.92840 4.96353 5.00872 5.09211 5.29247 5.38665 5.52190 5.70247 5.72283 6.02385 6.07707 6.10634 6.18754 6.25094 6.74638 6.93156 7.09261 8.60063 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.018175 B = 0.001749 C = 0.001711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.196510 B =16008.983676 C =16359.460237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.532 5.532 3 C 0.065 3.935 4 C -0.022 4.022 5 C -0.249 4.249 6 C 0.038 3.962 7 N -0.343 5.343 8 N -0.384 5.384 9 C 0.093 3.907 10 C 0.063 3.937 11 C 0.048 3.952 12 C 0.123 3.877 13 N -0.609 5.609 14 C 0.069 3.931 15 C 0.529 3.471 16 O -0.563 6.563 17 C -0.105 4.105 18 S -0.180 6.180 19 C -0.528 4.528 20 H 0.063 0.937 21 C 0.047 3.953 22 N -0.915 5.915 23 Si 0.913 3.087 24 H -0.263 1.263 25 H -0.258 1.258 26 H -0.238 1.238 27 H 0.067 0.933 28 H 0.090 0.910 29 H 0.009 0.991 30 H 0.078 0.922 31 H 0.016 0.984 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.188 0.812 35 H 0.086 0.914 36 H 0.115 0.885 37 H 0.084 0.916 38 H 0.207 0.793 39 H 0.006 0.994 40 H 0.090 0.910 41 H 0.115 0.885 42 H 0.063 0.937 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.103 0.897 46 H 0.111 0.889 47 H 0.112 0.888 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.489 18.244 28.706 35.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.256 5.256 3 C -0.063 4.063 4 C -0.061 4.061 5 C -0.261 4.261 6 C -0.147 4.147 7 N -0.166 5.166 8 N -0.166 5.166 9 C -0.047 4.047 10 C -0.084 4.084 11 C -0.081 4.081 12 C 0.001 3.999 13 N -0.343 5.343 14 C -0.072 4.072 15 C 0.317 3.683 16 O -0.441 6.441 17 C -0.256 4.256 18 S 0.046 5.954 19 C -0.675 4.675 20 H 0.082 0.918 21 C -0.158 4.158 22 N -0.553 5.553 23 Si 0.735 3.265 24 H -0.188 1.188 25 H -0.182 1.182 26 H -0.162 1.162 27 H 0.086 0.914 28 H 0.109 0.891 29 H 0.028 0.972 30 H 0.096 0.904 31 H 0.034 0.966 32 H 0.089 0.911 33 H 0.106 0.894 34 H 0.205 0.795 35 H 0.104 0.896 36 H 0.133 0.867 37 H 0.103 0.897 38 H 0.224 0.776 39 H 0.024 0.976 40 H 0.108 0.892 41 H 0.133 0.867 42 H 0.082 0.918 43 H 0.092 0.908 44 H 0.091 0.909 45 H 0.121 0.879 46 H 0.129 0.871 47 H 0.130 0.870 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.335 19.994 28.798 35.817 hybrid contribution 0.309 -0.926 -1.653 1.920 sum 7.644 19.067 27.145 34.042 Atomic orbital electron populations 1.22526 0.87344 1.02551 1.00597 1.62040 1.08115 1.13987 1.41433 1.22140 1.00118 0.86801 0.97226 1.19734 1.00706 0.88846 0.96841 1.20226 0.96379 0.96758 1.12774 1.24124 1.00425 0.90440 0.99720 1.77290 0.94082 1.24680 1.20507 1.48827 1.13292 1.06779 1.47716 1.22168 0.84215 0.95925 1.02436 1.22925 0.99475 0.85328 1.00626 1.22372 1.00771 0.93897 0.91070 1.21468 0.99956 0.90063 0.88455 1.47827 1.17647 1.53604 1.15201 1.22137 0.81027 0.99912 1.04149 1.20076 0.84890 0.79663 0.83699 1.90674 1.21274 1.50737 1.81424 1.23288 1.02477 1.04132 0.95725 1.84736 1.25239 1.71228 1.14174 1.22442 1.04137 1.38298 1.02647 0.91849 1.25532 1.01709 0.93867 0.94733 1.70013 1.39562 1.38028 1.07719 0.85891 0.80484 0.79346 0.80792 1.18817 1.18211 1.16202 0.91444 0.89108 0.97236 0.90369 0.96602 0.91091 0.89409 0.79477 0.89591 0.86655 0.89678 0.77603 0.97607 0.89203 0.86714 0.91812 0.90817 0.90901 0.87866 0.87073 0.86985 0.91365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.13 127.69 1.17 1.50 16 2 N -0.53 -9.36 4.76 -922.45 -4.39 -13.75 16 3 C 0.07 1.02 4.94 86.30 0.43 1.45 16 4 C -0.02 -0.28 5.63 29.85 0.17 -0.11 16 5 C -0.25 -3.66 5.35 -20.14 -0.11 -3.77 16 6 C 0.04 0.69 11.96 85.24 1.02 1.71 16 7 N -0.34 -7.18 12.57 -57.02 -0.72 -7.90 16 8 N -0.38 -5.59 4.01 -369.57 -1.48 -7.07 16 9 C 0.09 0.54 11.47 127.77 1.47 2.01 16 10 C 0.06 0.74 11.40 83.54 0.95 1.70 16 11 C 0.05 1.00 5.28 86.30 0.46 1.45 16 12 C 0.12 2.62 5.33 86.38 0.46 3.08 16 13 N -0.61 -15.01 2.87 -846.76 -2.43 -17.44 16 14 C 0.07 1.11 10.24 127.77 1.31 2.42 16 15 C 0.53 18.79 7.69 87.66 0.67 19.46 16 16 O -0.56 -24.60 15.44 -3.05 -0.05 -24.64 16 17 C -0.11 -4.04 4.71 71.24 0.34 -3.71 16 18 S -0.18 -9.25 18.55 -56.49 -1.05 -10.30 16 19 C -0.53 -30.87 10.04 67.95 0.68 -30.18 16 20 H 0.06 3.89 8.03 -2.91 -0.02 3.87 16 21 C 0.05 2.78 5.50 84.86 0.47 3.24 16 22 N -0.92 -55.76 13.97 21.65 0.30 -55.46 16 23 Si 0.91 45.39 27.74 68.60 1.90 47.29 16 24 H -0.26 -12.82 7.11 99.48 0.71 -12.11 16 25 H -0.26 -11.98 7.11 99.48 0.71 -11.28 16 26 H -0.24 -11.87 6.74 99.48 0.67 -11.20 16 27 H 0.07 1.31 6.47 -2.39 -0.02 1.30 16 28 H 0.09 1.29 6.30 -2.39 -0.02 1.28 16 29 H 0.01 0.21 8.14 -2.39 -0.02 0.19 16 30 H 0.08 1.13 7.93 -2.39 -0.02 1.11 16 31 H 0.02 0.31 8.12 -2.39 -0.02 0.29 16 32 H 0.07 0.89 6.47 -2.39 -0.02 0.87 16 33 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.19 2.75 8.06 -2.91 -0.02 2.73 16 35 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 36 H 0.12 0.01 8.14 -2.39 -0.02 -0.01 16 37 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.21 0.82 8.06 -2.91 -0.02 0.80 16 39 H 0.01 0.16 8.12 -2.39 -0.02 0.14 16 40 H 0.09 1.55 7.93 -2.39 -0.02 1.53 16 41 H 0.11 1.75 8.07 -2.39 -0.02 1.73 16 42 H 0.06 1.67 5.83 -2.39 -0.01 1.65 16 43 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.07 1.25 6.44 -2.39 -0.02 1.23 16 45 H 0.10 1.02 8.07 -2.39 -0.02 1.00 16 46 H 0.11 3.92 7.40 -2.39 -0.02 3.91 16 47 H 0.11 3.96 8.11 -2.40 -0.02 3.94 16 48 H 0.28 15.60 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -80.99 406.13 2.46 -78.54 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: 0.90 Total: 10.49 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: 9.47 Total: 0.24 kcal Atomic # 7 Polarization: -92.90 SS G_CDS: -8.72 Total: -101.62 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: -0.05 Total: -24.64 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 1.90 Total: 47.29 kcal Atomic # 16 Polarization: -9.25 SS G_CDS: -1.05 Total: -10.30 kcal Total: -80.99 2.46 -78.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698985645.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.185 kcal (2) G-P(sol) polarization free energy of solvation -80.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds