Wall clock time and date at job start Sat Apr 11 2020 06:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47161 * 2 1 4 4 N 1.46901 * 109.47269 * 240.00137 * 2 1 3 5 5 C 1.46905 * 110.99870 * 84.99904 * 4 2 1 6 6 C 1.52993 * 109.47039 * 180.02562 * 5 4 2 7 7 C 1.50698 * 109.47393 * 180.02562 * 6 5 4 8 8 C 1.39871 * 126.04018 * 269.69508 * 7 6 5 9 9 N 1.30836 * 108.20368 * 179.81382 * 8 7 6 10 10 N 1.40087 * 108.20511 * 0.43506 * 9 8 7 11 11 C 1.46502 * 126.03864 * 179.69847 * 10 9 8 12 12 C 1.34949 * 107.92694 * 359.71999 * 10 9 8 13 13 C 1.53001 * 109.47245 * 120.00015 * 2 1 3 14 14 H 1.09001 * 109.47159 * 185.00110 * 13 2 1 15 15 C 1.53005 * 109.47024 * 65.00139 * 13 2 1 16 16 N 1.46498 * 109.47282 * 305.00054 * 13 2 1 17 17 C 1.34768 * 120.00158 * 204.99561 * 16 13 2 18 18 O 1.21287 * 119.99866 * 0.02562 * 17 16 13 19 19 C 1.50701 * 120.00321 * 179.97438 * 17 16 13 20 20 S 1.80999 * 109.47540 * 180.02562 * 19 17 16 21 21 C 1.76195 * 100.00334 * 179.97438 * 20 19 17 22 22 H 1.08001 * 119.99723 * 0.02562 * 21 20 19 23 23 C 1.38792 * 120.00052 * 180.02562 * 21 20 19 24 24 N 1.31631 * 119.99826 * 180.02562 * 23 21 20 25 25 Si 1.86796 * 120.00311 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.46947 * 89.99979 * 25 23 21 27 27 H 1.48492 * 109.47520 * 209.99999 * 25 23 21 28 28 H 1.48499 * 109.47189 * 330.00699 * 25 23 21 29 29 H 1.09000 * 109.47161 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47343 * 299.99942 * 1 2 3 31 31 H 1.09004 * 109.47587 * 59.99932 * 1 2 3 32 32 H 1.00901 * 111.00067 * 208.95080 * 4 2 1 33 33 H 1.09001 * 109.46798 * 300.00327 * 5 4 2 34 34 H 1.08998 * 109.46961 * 60.00043 * 5 4 2 35 35 H 1.09001 * 109.47393 * 299.99719 * 6 5 4 36 36 H 1.08998 * 109.47408 * 60.00073 * 6 5 4 37 37 H 1.08001 * 125.89488 * 359.97438 * 8 7 6 38 38 H 1.09005 * 109.46994 * 270.02734 * 11 10 9 39 39 H 1.09003 * 109.46971 * 30.02320 * 11 10 9 40 40 H 1.08998 * 109.47231 * 150.02653 * 11 10 9 41 41 H 1.07994 * 126.13028 * 179.97438 * 12 10 9 42 42 H 1.08996 * 109.46711 * 300.00174 * 15 13 2 43 43 H 1.09004 * 109.46708 * 59.99840 * 15 13 2 44 44 H 1.08991 * 109.47253 * 179.97438 * 15 13 2 45 45 H 0.97001 * 119.99476 * 25.00346 * 16 13 2 46 46 H 1.08995 * 109.47154 * 300.00542 * 19 17 16 47 47 H 1.09003 * 109.46595 * 60.00283 * 19 17 16 48 48 H 0.97006 * 120.00037 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0824 0.2227 -2.3469 6 6 2.5950 -0.5330 -3.5745 7 6 2.6600 0.4059 -4.7514 8 6 1.6351 0.6417 -5.6736 9 7 2.0632 1.5188 -6.5450 10 7 3.3795 1.8618 -6.2102 11 6 4.2335 2.8088 -6.9315 12 6 3.7222 1.1655 -5.1062 13 6 2.0400 -0.7212 1.2492 14 1 3.1263 -0.6443 1.2951 15 6 1.6352 -2.1955 1.1879 16 7 1.4558 -0.1037 2.4424 17 6 2.0912 -0.1939 3.6275 18 8 3.1468 -0.7860 3.7061 19 6 1.4906 0.4419 4.8548 20 16 2.5721 0.1495 6.2764 21 6 1.6553 0.9763 7.5335 22 1 0.7208 1.4601 7.2906 23 6 2.1340 1.0057 8.8360 24 7 1.4488 1.6230 9.7752 25 14 3.7500 0.1683 9.2563 26 1 4.8660 1.1334 9.0880 27 1 3.7117 -0.3035 10.6637 28 1 3.9571 -0.9905 8.3511 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 2.9173 -1.1204 -1.0288 33 1 1.0870 0.6164 -2.5525 34 1 2.7588 1.0463 -2.1182 35 1 3.5903 -0.9270 -3.3692 36 1 1.9183 -1.3563 -3.8030 37 1 0.6581 0.1815 -5.6659 38 1 4.7944 2.2787 -7.7013 39 1 3.6137 3.5754 -7.3966 40 1 4.9275 3.2768 -6.2334 41 1 4.6738 1.2068 -4.5973 42 1 0.5489 -2.2724 1.1420 43 1 2.0699 -2.6549 0.3001 44 1 1.9989 -2.7094 2.0776 45 1 0.6117 0.3700 2.3794 46 1 1.3851 1.5146 4.6935 47 1 0.5106 0.0052 5.0475 48 1 1.7836 1.6439 10.6854 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700389303.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:27 Heat of formation + Delta-G solvation = 35.401143 kcal Electronic energy + Delta-G solvation = -25944.493531 eV Core-core repulsion = 22162.278908 eV Total energy + Delta-G solvation = -3782.214622 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.59572 -39.76485 -37.89039 -35.38053 -33.82931 -32.55114 -32.43241 -30.95215 -29.64127 -28.59439 -28.33094 -26.39627 -25.61628 -24.39343 -22.66223 -21.51687 -20.76501 -20.45320 -19.77900 -17.94455 -17.20701 -16.69191 -16.44557 -16.00374 -15.81496 -15.21841 -15.00244 -14.93189 -14.81859 -14.54436 -14.32651 -13.86523 -13.51904 -13.40822 -13.26874 -13.13641 -13.02555 -12.86092 -12.77574 -12.44938 -12.26903 -12.08684 -11.94109 -11.77384 -11.51526 -11.26344 -11.07767 -11.00910 -10.86896 -10.78634 -10.57344 -9.85631 -9.84215 -9.50648 -9.02040 -8.96101 -8.78948 -8.74179 -8.49762 -6.91407 -6.28751 -4.00394 1.46608 2.10025 2.37925 2.76133 2.98640 3.28042 3.33427 3.50587 3.61686 3.93290 4.10632 4.33292 4.39330 4.44571 4.62488 4.67695 4.71556 4.74801 4.82009 4.89362 4.97886 5.01600 5.04852 5.10359 5.23506 5.25890 5.36505 5.38825 5.44824 5.49869 5.54863 5.64199 5.76646 5.77739 5.82625 5.90940 5.93914 6.02262 6.07595 6.24676 6.32934 6.57061 6.58226 6.72108 7.05306 7.28135 7.63174 7.94286 8.41863 8.51082 9.17478 10.80473 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.023677 B = 0.001590 C = 0.001560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.279152 B =17610.129073 C =17943.636719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.078 3.922 3 H 0.049 0.951 4 N -0.679 5.679 5 C 0.065 3.935 6 C -0.037 4.037 7 C -0.234 4.234 8 C 0.054 3.946 9 N -0.300 5.300 10 N -0.378 5.378 11 C 0.101 3.899 12 C 0.056 3.944 13 C 0.143 3.857 14 H 0.084 0.916 15 C -0.157 4.157 16 N -0.731 5.731 17 C 0.532 3.468 18 O -0.520 6.520 19 C -0.125 4.125 20 S -0.141 6.141 21 C -0.522 4.522 22 H 0.088 0.912 23 C 0.096 3.904 24 N -0.880 5.880 25 Si 0.857 3.143 26 H -0.267 1.267 27 H -0.274 1.274 28 H -0.235 1.235 29 H 0.069 0.931 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.342 0.658 33 H 0.073 0.927 34 H 0.028 0.972 35 H 0.066 0.934 36 H 0.080 0.920 37 H 0.183 0.817 38 H 0.074 0.926 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.172 0.828 42 H 0.059 0.941 43 H 0.070 0.930 44 H 0.058 0.942 45 H 0.398 0.602 46 H 0.096 0.904 47 H 0.097 0.903 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.817 -1.327 -33.370 33.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.032 4.032 3 H 0.067 0.933 4 N -0.312 5.312 5 C -0.065 4.065 6 C -0.076 4.076 7 C -0.246 4.246 8 C -0.132 4.132 9 N -0.121 5.121 10 N -0.160 5.160 11 C -0.040 4.040 12 C -0.091 4.091 13 C 0.037 3.963 14 H 0.102 0.898 15 C -0.215 4.215 16 N -0.387 5.387 17 C 0.318 3.682 18 O -0.394 6.394 19 C -0.275 4.275 20 S 0.085 5.915 21 C -0.669 4.669 22 H 0.106 0.894 23 C -0.113 4.113 24 N -0.517 5.517 25 Si 0.682 3.318 26 H -0.192 1.192 27 H -0.199 1.199 28 H -0.159 1.159 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.161 0.839 33 H 0.091 0.909 34 H 0.046 0.954 35 H 0.084 0.916 36 H 0.099 0.901 37 H 0.200 0.800 38 H 0.093 0.907 39 H 0.107 0.893 40 H 0.106 0.894 41 H 0.189 0.811 42 H 0.078 0.922 43 H 0.089 0.911 44 H 0.077 0.923 45 H 0.234 0.766 46 H 0.114 0.886 47 H 0.115 0.885 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.764 -1.700 -34.345 34.498 hybrid contribution -0.019 0.946 1.265 1.579 sum 2.745 -0.755 -33.080 33.203 Atomic orbital electron populations 1.21867 0.94188 1.02930 1.01194 1.21694 0.96565 0.95967 0.88952 0.93326 1.60557 1.33462 1.33132 1.04005 1.22027 1.00960 0.93566 0.89908 1.19804 1.01765 0.95972 0.90048 1.20046 0.94620 1.07196 1.02703 1.23845 1.00087 0.96386 0.92886 1.77371 0.92212 1.18462 1.24080 1.48473 1.10966 1.34474 1.22131 1.21865 0.93292 0.91676 0.97200 1.22379 1.00537 0.95599 0.90546 1.20960 0.98664 0.93139 0.83518 0.89834 1.22125 1.01945 0.95079 1.02354 1.46108 1.26339 1.58363 1.07893 1.20274 0.84609 0.79472 0.83868 1.90692 1.22072 1.41619 1.85061 1.23285 1.04175 1.03769 0.96293 1.84772 1.32302 1.73868 1.00585 1.22323 1.10690 1.39667 0.94255 0.89403 1.24709 0.97382 0.94138 0.95057 1.69942 1.38489 1.41298 1.01971 0.86731 0.83725 0.82081 0.79295 1.19248 1.19938 1.15917 0.91163 0.92568 0.92510 0.83882 0.90863 0.95399 0.91556 0.90138 0.80002 0.90734 0.89275 0.89431 0.81078 0.92208 0.91105 0.92305 0.76573 0.88587 0.88450 0.91956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 8.93 37.15 0.33 -0.78 16 2 C 0.08 0.66 2.66 -67.72 -0.18 0.48 16 3 H 0.05 0.44 7.80 -51.93 -0.40 0.04 16 4 N -0.68 -4.89 5.51 -106.73 -0.59 -5.47 16 5 C 0.06 0.43 5.47 -3.82 -0.02 0.41 16 6 C -0.04 -0.22 5.96 -27.89 -0.17 -0.38 16 7 C -0.23 -1.66 5.35 -105.05 -0.56 -2.22 16 8 C 0.05 0.43 11.96 -17.36 -0.21 0.23 16 9 N -0.30 -2.89 12.58 30.62 0.39 -2.51 16 10 N -0.38 -2.81 4.01 -68.16 -0.27 -3.09 16 11 C 0.10 0.36 11.47 59.85 0.69 1.04 16 12 C 0.06 0.36 11.40 -17.22 -0.20 0.17 16 13 C 0.14 1.54 2.30 -67.93 -0.16 1.39 16 14 H 0.08 1.05 7.58 -51.93 -0.39 0.66 16 15 C -0.16 -1.66 9.02 37.16 0.34 -1.32 16 16 N -0.73 -9.14 4.99 -53.80 -0.27 -9.41 16 17 C 0.53 9.30 7.81 -10.99 -0.09 9.21 16 18 O -0.52 -11.01 15.52 5.55 0.09 -10.92 16 19 C -0.12 -2.39 6.16 36.01 0.22 -2.17 16 20 S -0.14 -3.58 18.55 -107.50 -1.99 -5.58 16 21 C -0.52 -15.04 10.04 30.94 0.31 -14.73 16 22 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 23 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 24 N -0.88 -26.56 13.97 55.49 0.78 -25.78 16 25 Si 0.86 21.78 27.74 -169.99 -4.71 17.07 16 26 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 27 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 28 H -0.24 -5.97 6.74 56.52 0.38 -5.59 16 29 H 0.07 0.57 6.57 -51.93 -0.34 0.23 16 30 H 0.06 0.41 6.29 -51.93 -0.33 0.08 16 31 H 0.06 0.42 7.45 -51.93 -0.39 0.03 16 32 H 0.34 2.34 7.92 -39.29 -0.31 2.02 16 33 H 0.07 0.54 7.44 -51.93 -0.39 0.15 16 34 H 0.03 0.20 8.05 -51.93 -0.42 -0.22 16 35 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.18 1.03 8.06 -52.49 -0.42 0.61 16 38 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 39 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 40 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 41 H 0.17 0.64 8.06 -52.49 -0.42 0.22 16 42 H 0.06 0.60 6.57 -51.93 -0.34 0.26 16 43 H 0.07 0.64 7.17 -51.93 -0.37 0.27 16 44 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.40 4.01 6.58 -40.82 -0.27 3.74 16 46 H 0.10 1.72 8.14 -51.92 -0.42 1.29 16 47 H 0.10 1.75 8.14 -51.92 -0.42 1.32 16 48 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 404.85 15.07 6.10 6.10 Total: -1.00 -35.91 404.85 -8.03 -43.95 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -7.76 Total: 1.63 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: 0.21 Total: -5.98 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: 0.03 Total: -46.26 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.09 Total: -10.92 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.71 Total: 17.07 kcal Atomic # 16 Polarization: -3.58 SS G_CDS: -1.99 Total: -5.58 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.91 -8.03 -43.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700389303.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.346 kcal (2) G-P(sol) polarization free energy of solvation -35.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds