Wall clock time and date at job start Sat Apr 11 2020 06:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46506 * 119.99838 * 2 1 4 4 C 1.52999 * 109.46471 * 269.99437 * 3 2 1 5 5 N 1.46900 * 109.46928 * 180.02562 * 4 3 2 6 6 C 1.46898 * 111.00198 * 180.02562 * 5 4 3 7 7 C 1.50704 * 109.46969 * 179.97438 * 6 5 4 8 8 O 1.21294 * 120.00138 * 0.02562 * 7 6 5 9 9 N 1.34782 * 119.99921 * 179.97438 * 7 6 5 10 10 C 1.37096 * 120.00160 * 180.02562 * 9 7 6 11 11 H 1.08004 * 119.99795 * 0.02562 * 10 9 7 12 12 C 1.38947 * 119.99886 * 179.97438 * 10 9 7 13 13 N 1.31402 * 120.00210 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99809 * 179.97438 * 12 10 9 15 15 H 1.48508 * 109.47176 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.47095 * 120.00123 * 14 12 10 17 17 H 1.48497 * 109.47255 * 240.00335 * 14 12 10 18 18 C 1.34775 * 120.00008 * 179.97438 * 2 1 3 19 19 O 1.21279 * 120.00225 * 180.02562 * 18 2 1 20 20 C 1.50700 * 119.99825 * 0.02562 * 18 2 1 21 21 N 1.46501 * 109.47068 * 179.97438 * 20 18 2 22 22 N 1.40170 * 126.35006 * 269.99780 * 21 20 18 23 23 C 1.29398 * 108.13850 * 179.75494 * 22 21 20 24 24 N 1.37364 * 108.83273 * 0.38626 * 23 22 21 25 25 C 1.46499 * 125.83455 * 179.87027 * 24 23 22 26 26 C 1.34818 * 108.33083 * 359.61281 * 24 23 22 27 27 O 1.21813 * 126.29915 * 180.19614 * 26 24 23 28 28 H 1.08994 * 109.47662 * 270.00469 * 1 2 3 29 29 H 1.09006 * 109.47066 * 30.00896 * 1 2 3 30 30 H 1.08998 * 109.47012 * 149.99857 * 1 2 3 31 31 H 1.08996 * 109.47293 * 29.99565 * 3 2 1 32 32 H 1.08999 * 109.46853 * 150.00146 * 3 2 1 33 33 H 1.09004 * 109.47272 * 299.99754 * 4 3 2 34 34 H 1.08995 * 109.47504 * 60.00254 * 4 3 2 35 35 H 1.00898 * 111.00167 * 56.04305 * 5 4 3 36 36 H 1.09002 * 109.47047 * 299.99393 * 6 5 4 37 37 H 1.08997 * 109.47422 * 59.99737 * 6 5 4 38 38 H 0.97003 * 119.99548 * 359.97438 * 9 7 6 39 39 H 0.97001 * 120.00232 * 179.97438 * 13 12 10 40 40 H 1.08994 * 109.47358 * 59.99822 * 20 18 2 41 41 H 1.09008 * 109.47281 * 300.00090 * 20 18 2 42 42 H 1.08004 * 125.58286 * 180.22292 * 23 22 21 43 43 H 1.09002 * 109.47391 * 269.69141 * 25 24 23 44 44 H 1.09001 * 109.46813 * 149.69197 * 25 24 23 45 45 H 1.09004 * 109.47041 * 29.69324 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7103 -1.4425 5 7 3.1875 2.9822 -1.4427 6 6 3.4503 3.4383 -2.8141 7 6 4.2035 4.7429 -2.7739 8 8 4.4934 5.2433 -1.7077 9 7 4.5560 5.3532 -3.9228 10 6 5.2417 6.5398 -3.8863 11 1 5.4998 6.9854 -2.9369 12 6 5.6055 7.1687 -5.0707 13 7 5.2920 6.6263 -6.2258 14 14 6.5392 8.7859 -5.0210 15 1 6.7678 9.1822 -3.6081 16 1 7.8463 8.6241 -5.7069 17 1 5.7462 9.8366 -5.7082 18 6 2.1389 -1.1672 0.0005 19 8 3.3517 -1.1672 0.0010 20 6 1.3853 -2.4723 0.0005 21 7 2.3373 -3.5858 0.0005 22 7 2.8772 -4.2173 -1.1284 23 6 3.6799 -5.1482 -0.7240 24 7 3.6857 -5.1629 0.6495 25 6 4.4640 -6.0722 1.4942 26 6 2.8570 -4.1938 1.0874 27 8 2.6206 -3.9181 2.2501 28 1 -0.3634 0.0001 1.0276 29 1 -0.3633 0.8900 -0.5140 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6084 2.0284 0.5137 32 1 3.1499 1.1384 0.5138 33 1 3.0417 0.9506 -1.9563 34 1 1.5002 1.8406 -1.9565 35 1 4.0450 2.9044 -0.9166 36 1 4.0459 2.6905 -3.3378 37 1 2.5047 3.5810 -3.3370 38 1 4.3252 4.9524 -4.7755 39 1 5.5456 7.0655 -7.0527 40 1 0.7590 -2.5302 -0.8896 41 1 0.7583 -2.5298 0.8903 42 1 4.2498 -5.8075 -1.3620 43 1 3.8761 -6.9657 1.7044 44 1 4.7143 -5.5734 2.4306 45 1 5.3808 -6.3540 0.9763 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714727384.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:49 Heat of formation + Delta-G solvation = -3.744130 kcal Electronic energy + Delta-G solvation = -28621.440850 eV Core-core repulsion = 24291.235546 eV Total energy + Delta-G solvation = -4330.205303 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.169 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.75986 -40.14400 -38.26259 -37.56225 -36.52603 -35.56023 -35.00752 -33.80267 -32.34289 -31.21827 -30.14825 -28.61224 -27.33468 -27.07286 -25.68404 -24.00819 -23.10039 -22.19095 -21.60129 -19.78505 -19.15420 -18.07419 -17.88017 -17.77142 -16.76878 -16.69034 -16.34710 -16.17907 -15.88039 -15.51698 -15.44204 -14.88784 -14.55508 -14.34770 -14.00464 -13.76011 -13.73584 -13.56851 -13.25096 -13.21692 -13.13852 -12.83601 -12.70597 -12.65946 -12.23995 -12.19162 -11.97965 -11.50234 -11.47968 -11.12277 -10.97356 -10.88067 -10.61101 -10.32373 -10.20445 -10.00133 -9.49879 -9.00893 -8.90725 -8.43504 -8.05917 -7.93732 -6.39551 -3.80242 1.28174 1.60594 2.27764 2.30787 2.61487 2.84664 3.18195 3.28504 3.36212 3.93447 3.98288 4.05525 4.16497 4.35319 4.44687 4.49461 4.61899 4.75605 4.76001 4.93537 4.96762 5.01133 5.04851 5.19766 5.22758 5.29171 5.32310 5.43409 5.51577 5.64861 5.77183 5.86882 5.89926 6.01158 6.11614 6.19776 6.30754 7.00920 7.19920 7.23384 7.57670 7.65027 7.68200 7.84655 8.08905 8.63715 9.20227 9.56722 10.08249 10.78348 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.019849 B = 0.001723 C = 0.001659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.313247 B =16250.304412 C =16876.858034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.612 5.612 3 C 0.118 3.882 4 C 0.047 3.953 5 N -0.667 5.667 6 C 0.053 3.947 7 C 0.442 3.558 8 O -0.583 6.583 9 N -0.564 5.564 10 C -0.298 4.298 11 H 0.104 0.896 12 C 0.021 3.979 13 N -0.902 5.902 14 Si 0.930 3.070 15 H -0.268 1.268 16 H -0.282 1.282 17 H -0.281 1.281 18 C 0.495 3.505 19 O -0.520 6.520 20 C 0.146 3.854 21 N -0.439 5.439 22 N -0.273 5.273 23 C 0.258 3.742 24 N -0.561 5.561 25 C 0.099 3.901 26 C 0.652 3.348 27 O -0.553 6.553 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.030 0.970 34 H 0.071 0.929 35 H 0.351 0.649 36 H 0.044 0.956 37 H 0.086 0.914 38 H 0.392 0.608 39 H 0.271 0.729 40 H 0.126 0.874 41 H 0.125 0.875 42 H 0.232 0.768 43 H 0.073 0.927 44 H 0.088 0.912 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.212 -28.796 9.300 31.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.347 5.347 3 C -0.005 4.005 4 C -0.084 4.084 5 N -0.300 5.300 6 C -0.080 4.080 7 C 0.227 3.773 8 O -0.467 6.467 9 N -0.201 5.201 10 C -0.428 4.428 11 H 0.122 0.878 12 C -0.180 4.180 13 N -0.544 5.544 14 Si 0.757 3.243 15 H -0.192 1.192 16 H -0.208 1.208 17 H -0.207 1.207 18 C 0.281 3.719 19 O -0.395 6.395 20 C 0.021 3.979 21 N -0.259 5.259 22 N -0.094 5.094 23 C -0.042 4.042 24 N -0.290 5.290 25 C -0.043 4.043 26 C 0.352 3.648 27 O -0.426 6.426 28 H 0.081 0.919 29 H 0.100 0.900 30 H 0.090 0.910 31 H 0.110 0.890 32 H 0.102 0.898 33 H 0.048 0.952 34 H 0.090 0.910 35 H 0.170 0.830 36 H 0.062 0.938 37 H 0.104 0.896 38 H 0.225 0.775 39 H 0.081 0.919 40 H 0.144 0.856 41 H 0.142 0.858 42 H 0.249 0.751 43 H 0.092 0.908 44 H 0.106 0.894 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.510 -27.283 9.955 30.885 hybrid contribution 1.299 -0.383 -0.517 1.450 sum -9.210 -27.666 9.438 30.648 Atomic orbital electron populations 1.21934 0.78956 1.03803 1.02430 1.47789 1.07270 1.05880 1.73774 1.21446 0.98308 0.83490 0.97234 1.22247 0.99069 0.90595 0.96501 1.60015 1.28397 1.27826 1.13741 1.21655 1.00238 0.96099 0.90027 1.19800 0.85155 0.87298 0.85045 1.90523 1.59236 1.67251 1.29651 1.41868 1.50064 1.21422 1.06758 1.19766 1.30746 0.97700 0.94581 0.87841 1.25266 0.98225 0.99895 0.94642 1.69619 1.47201 1.40074 0.97468 0.85792 0.78805 0.81116 0.78579 1.19210 1.20794 1.20746 1.20923 0.88593 0.85549 0.76839 1.90756 1.13687 1.86907 1.48151 1.21263 0.88923 0.81202 1.06545 1.48207 1.42800 1.31536 1.03386 1.77013 1.13319 1.08744 1.10331 1.25953 0.97636 0.97617 0.82948 1.45861 1.42375 1.33335 1.07472 1.21839 0.94995 0.92158 0.95282 1.16645 0.81444 0.81207 0.85505 1.91087 1.66467 1.69817 1.15195 0.91889 0.89994 0.91047 0.89028 0.89770 0.95168 0.91034 0.82974 0.93829 0.89593 0.77456 0.91946 0.85643 0.85761 0.75148 0.90791 0.89376 0.89188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.39 10.24 59.85 0.61 1.00 16 2 N -0.61 -6.13 2.87 -181.57 -0.52 -6.65 16 3 C 0.12 1.42 5.67 -4.04 -0.02 1.39 16 4 C 0.05 0.63 6.01 -3.82 -0.02 0.61 16 5 N -0.67 -11.44 6.12 -115.06 -0.70 -12.15 16 6 C 0.05 0.98 6.17 -4.98 -0.03 0.95 16 7 C 0.44 10.80 7.82 -10.98 -0.09 10.72 16 8 O -0.58 -16.31 15.78 5.55 0.09 -16.22 16 9 N -0.56 -14.71 5.29 -10.96 -0.06 -14.77 16 10 C -0.30 -8.51 9.68 -14.93 -0.14 -8.65 16 11 H 0.10 3.10 7.16 -52.48 -0.38 2.72 16 12 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 13 N -0.90 -24.94 13.05 55.50 0.72 -24.21 16 14 Si 0.93 21.40 29.55 -169.99 -5.02 16.37 16 15 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 16 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 18 C 0.50 6.05 7.74 -10.99 -0.09 5.97 16 19 O -0.52 -8.86 16.01 5.56 0.09 -8.77 16 20 C 0.15 1.30 5.42 -5.19 -0.03 1.28 16 21 N -0.44 -4.97 3.11 -66.31 -0.21 -5.17 16 22 N -0.27 -2.71 12.53 29.87 0.37 -2.34 16 23 C 0.26 1.64 12.66 -89.12 -1.13 0.52 16 24 N -0.56 -4.57 3.14 -130.10 -0.41 -4.98 16 25 C 0.10 0.40 11.05 59.85 0.66 1.06 16 26 C 0.65 8.09 8.60 -86.73 -0.75 7.35 16 27 O -0.55 -8.57 17.71 5.09 0.09 -8.48 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.08 0.41 8.07 -51.93 -0.42 -0.01 16 30 H 0.07 0.22 6.44 -51.93 -0.33 -0.11 16 31 H 0.09 1.00 8.07 -51.93 -0.42 0.58 16 32 H 0.08 1.19 7.42 -51.93 -0.39 0.80 16 33 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.35 6.38 8.43 -39.29 -0.33 6.05 16 36 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 38 H 0.39 9.75 7.90 -40.82 -0.32 9.43 16 39 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 40 H 0.13 0.72 7.40 -51.93 -0.38 0.34 16 41 H 0.12 0.87 8.07 -51.92 -0.42 0.45 16 42 H 0.23 0.17 8.06 -52.48 -0.42 -0.25 16 43 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 44 H 0.09 0.48 8.08 -51.93 -0.42 0.06 16 45 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 LS Contribution 393.46 15.07 5.93 5.93 Total: -1.00 -41.49 393.46 -7.07 -48.56 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -6.33 Total: 10.20 kcal Atomic # 6 Polarization: 23.79 SS G_CDS: -1.12 Total: 22.67 kcal Atomic # 7 Polarization: -69.47 SS G_CDS: -0.80 Total: -70.27 kcal Atomic # 8 Polarization: -33.73 SS G_CDS: 0.27 Total: -33.47 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -41.49 -7.07 -48.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714727384.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.817 kcal (2) G-P(sol) polarization free energy of solvation -41.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds