Wall clock time and date at job start Sat Apr 11 2020 06:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46506 * 119.99838 * 2 1 4 4 C 1.52999 * 109.46471 * 269.99437 * 3 2 1 5 5 N 1.46900 * 109.46928 * 180.02562 * 4 3 2 6 6 C 1.46898 * 111.00198 * 180.02562 * 5 4 3 7 7 C 1.50704 * 109.46969 * 179.97438 * 6 5 4 8 8 O 1.21294 * 120.00138 * 0.02562 * 7 6 5 9 9 N 1.34782 * 119.99921 * 179.97438 * 7 6 5 10 10 C 1.37096 * 120.00160 * 180.02562 * 9 7 6 11 11 H 1.08004 * 119.99795 * 0.02562 * 10 9 7 12 12 C 1.38947 * 119.99886 * 179.97438 * 10 9 7 13 13 N 1.31402 * 120.00210 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99809 * 179.97438 * 12 10 9 15 15 H 1.48508 * 109.47176 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.47095 * 120.00123 * 14 12 10 17 17 H 1.48497 * 109.47255 * 240.00335 * 14 12 10 18 18 C 1.34775 * 120.00008 * 179.97438 * 2 1 3 19 19 O 1.21279 * 120.00225 * 180.02562 * 18 2 1 20 20 C 1.50700 * 119.99825 * 0.02562 * 18 2 1 21 21 N 1.46501 * 109.47068 * 179.97438 * 20 18 2 22 22 N 1.40170 * 126.35006 * 269.99780 * 21 20 18 23 23 C 1.29398 * 108.13850 * 179.75494 * 22 21 20 24 24 N 1.37364 * 108.83273 * 0.38626 * 23 22 21 25 25 C 1.46499 * 125.83455 * 179.87027 * 24 23 22 26 26 C 1.34818 * 108.33083 * 359.61281 * 24 23 22 27 27 O 1.21813 * 126.29915 * 180.19614 * 26 24 23 28 28 H 1.08994 * 109.47662 * 270.00469 * 1 2 3 29 29 H 1.09006 * 109.47066 * 30.00896 * 1 2 3 30 30 H 1.08998 * 109.47012 * 149.99857 * 1 2 3 31 31 H 1.08996 * 109.47293 * 29.99565 * 3 2 1 32 32 H 1.08999 * 109.46853 * 150.00146 * 3 2 1 33 33 H 1.09004 * 109.47272 * 299.99754 * 4 3 2 34 34 H 1.08995 * 109.47504 * 60.00254 * 4 3 2 35 35 H 1.00898 * 111.00167 * 56.04305 * 5 4 3 36 36 H 1.09002 * 109.47047 * 299.99393 * 6 5 4 37 37 H 1.08997 * 109.47422 * 59.99737 * 6 5 4 38 38 H 0.97003 * 119.99548 * 359.97438 * 9 7 6 39 39 H 0.97001 * 120.00232 * 179.97438 * 13 12 10 40 40 H 1.08994 * 109.47358 * 59.99822 * 20 18 2 41 41 H 1.09008 * 109.47281 * 300.00090 * 20 18 2 42 42 H 1.08004 * 125.58286 * 180.22292 * 23 22 21 43 43 H 1.09002 * 109.47391 * 269.69141 * 25 24 23 44 44 H 1.09001 * 109.46813 * 149.69197 * 25 24 23 45 45 H 1.09004 * 109.47041 * 29.69324 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7103 -1.4425 5 7 3.1875 2.9822 -1.4427 6 6 3.4503 3.4383 -2.8141 7 6 4.2035 4.7429 -2.7739 8 8 4.4934 5.2433 -1.7077 9 7 4.5560 5.3532 -3.9228 10 6 5.2417 6.5398 -3.8863 11 1 5.4998 6.9854 -2.9369 12 6 5.6055 7.1687 -5.0707 13 7 5.2920 6.6263 -6.2258 14 14 6.5392 8.7859 -5.0210 15 1 6.7678 9.1822 -3.6081 16 1 7.8463 8.6241 -5.7069 17 1 5.7462 9.8366 -5.7082 18 6 2.1389 -1.1672 0.0005 19 8 3.3517 -1.1672 0.0010 20 6 1.3853 -2.4723 0.0005 21 7 2.3373 -3.5858 0.0005 22 7 2.8772 -4.2173 -1.1284 23 6 3.6799 -5.1482 -0.7240 24 7 3.6857 -5.1629 0.6495 25 6 4.4640 -6.0722 1.4942 26 6 2.8570 -4.1938 1.0874 27 8 2.6206 -3.9181 2.2501 28 1 -0.3634 0.0001 1.0276 29 1 -0.3633 0.8900 -0.5140 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6084 2.0284 0.5137 32 1 3.1499 1.1384 0.5138 33 1 3.0417 0.9506 -1.9563 34 1 1.5002 1.8406 -1.9565 35 1 4.0450 2.9044 -0.9166 36 1 4.0459 2.6905 -3.3378 37 1 2.5047 3.5810 -3.3370 38 1 4.3252 4.9524 -4.7755 39 1 5.5456 7.0655 -7.0527 40 1 0.7590 -2.5302 -0.8896 41 1 0.7583 -2.5298 0.8903 42 1 4.2498 -5.8075 -1.3620 43 1 3.8761 -6.9657 1.7044 44 1 4.7143 -5.5734 2.4306 45 1 5.3808 -6.3540 0.9763 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714727384.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:48 Heat of formation + Delta-G solvation = -36.958097 kcal Electronic energy + Delta-G solvation = -28622.881115 eV Core-core repulsion = 24291.235546 eV Total energy + Delta-G solvation = -4331.645569 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.44301 -41.04703 -40.18048 -38.45183 -37.63516 -36.30950 -36.24524 -35.74622 -33.31821 -33.02717 -31.23692 -29.39536 -28.16691 -27.85781 -26.99485 -25.58597 -23.91163 -23.17220 -22.37174 -21.20660 -20.49331 -19.92356 -18.77882 -18.55891 -17.95516 -17.56444 -17.34702 -17.11219 -16.97473 -16.74260 -16.51170 -16.29543 -15.92931 -15.48470 -15.41214 -15.08659 -14.89199 -14.45042 -14.21153 -14.15779 -13.86601 -13.59686 -13.56115 -13.50795 -13.43859 -13.35719 -13.11970 -12.94153 -12.90638 -12.73999 -12.42646 -12.14712 -12.12230 -11.62268 -11.53877 -11.45309 -10.79544 -10.42601 -10.04432 -9.81938 -9.68272 -9.47873 -8.48832 -5.97982 0.63661 1.05515 1.35557 1.39446 1.40999 1.51112 1.55563 1.86911 2.00968 2.25196 2.28995 2.92671 3.17809 3.35072 3.41782 3.53305 3.94309 4.03437 4.03928 4.07167 4.08341 4.25651 4.32124 4.37914 4.43539 4.45007 4.51107 4.53671 4.68666 4.73179 4.77705 4.85701 4.90404 4.94746 5.01029 5.35590 5.39385 5.64341 5.79971 6.03067 6.20308 6.23729 6.56983 6.57391 6.87297 6.98377 7.09812 7.52325 8.07566 8.68841 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.019849 B = 0.001723 C = 0.001659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.313247 B =16250.304412 C =16876.858034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.606 5.606 3 C 0.123 3.877 4 C 0.058 3.942 5 N -0.676 5.676 6 C 0.067 3.933 7 C 0.437 3.563 8 O -0.623 6.623 9 N -0.572 5.572 10 C -0.336 4.336 11 H 0.079 0.921 12 C -0.013 4.013 13 N -0.919 5.919 14 Si 0.995 3.005 15 H -0.274 1.274 16 H -0.270 1.270 17 H -0.269 1.269 18 C 0.488 3.512 19 O -0.580 6.580 20 C 0.145 3.855 21 N -0.447 5.447 22 N -0.311 5.311 23 C 0.278 3.722 24 N -0.560 5.560 25 C 0.092 3.908 26 C 0.631 3.369 27 O -0.599 6.599 28 H 0.076 0.924 29 H 0.091 0.909 30 H 0.100 0.900 31 H 0.106 0.894 32 H 0.055 0.945 33 H 0.016 0.984 34 H 0.094 0.906 35 H 0.341 0.659 36 H 0.060 0.940 37 H 0.111 0.889 38 H 0.397 0.603 39 H 0.278 0.722 40 H 0.160 0.840 41 H 0.141 0.859 42 H 0.288 0.712 43 H 0.093 0.907 44 H 0.067 0.933 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.221 -30.265 7.884 33.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.339 5.339 3 C -0.001 4.001 4 C -0.072 4.072 5 N -0.308 5.308 6 C -0.066 4.066 7 C 0.224 3.776 8 O -0.510 6.510 9 N -0.209 5.209 10 C -0.465 4.465 11 H 0.097 0.903 12 C -0.213 4.213 13 N -0.560 5.560 14 Si 0.819 3.181 15 H -0.199 1.199 16 H -0.196 1.196 17 H -0.194 1.194 18 C 0.276 3.724 19 O -0.460 6.460 20 C 0.020 3.980 21 N -0.266 5.266 22 N -0.132 5.132 23 C -0.020 4.020 24 N -0.287 5.287 25 C -0.049 4.049 26 C 0.330 3.670 27 O -0.477 6.477 28 H 0.095 0.905 29 H 0.110 0.890 30 H 0.119 0.881 31 H 0.124 0.876 32 H 0.073 0.927 33 H 0.035 0.965 34 H 0.112 0.888 35 H 0.159 0.841 36 H 0.077 0.923 37 H 0.129 0.871 38 H 0.231 0.769 39 H 0.088 0.912 40 H 0.178 0.822 41 H 0.159 0.841 42 H 0.303 0.697 43 H 0.111 0.889 44 H 0.086 0.914 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -11.572 -28.794 8.490 32.173 hybrid contribution 1.609 -0.002 -0.078 1.611 sum -9.962 -28.797 8.412 31.611 Atomic orbital electron populations 1.22297 0.75766 1.05778 1.04031 1.47888 1.09099 1.04504 1.72426 1.21262 0.97754 0.84916 0.96128 1.22239 0.99076 0.88418 0.97504 1.60048 1.28094 1.29943 1.12721 1.21529 1.00656 0.93012 0.91380 1.20808 0.84244 0.88606 0.83895 1.90492 1.60659 1.68810 1.30999 1.41925 1.50288 1.21180 1.07480 1.19724 1.33105 0.99443 0.94242 0.90317 1.26071 0.98402 1.02890 0.93926 1.69674 1.47192 1.41219 0.97945 0.84842 0.77928 0.77104 0.78265 1.19865 1.19571 1.19373 1.21595 0.88138 0.87008 0.75704 1.90720 1.16303 1.87815 1.51122 1.21520 0.88552 0.78999 1.08907 1.48440 1.42910 1.31706 1.03535 1.77008 1.15534 1.10565 1.10128 1.27101 0.95919 0.96511 0.82463 1.46138 1.41375 1.32568 1.08616 1.22171 0.96482 0.91633 0.94580 1.17072 0.82326 0.82326 0.85312 1.91025 1.68244 1.71455 1.16953 0.90500 0.89003 0.88147 0.87604 0.92684 0.96531 0.88792 0.84068 0.92258 0.87081 0.76915 0.91211 0.82226 0.84103 0.69735 0.88886 0.91442 0.85382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.51 10.24 127.77 1.31 1.82 16 2 N -0.61 -11.56 2.87 -846.76 -2.43 -13.99 16 3 C 0.12 2.94 5.67 86.38 0.49 3.43 16 4 C 0.06 1.51 6.01 86.30 0.52 2.03 16 5 N -0.68 -23.04 6.12 -517.93 -3.17 -26.22 16 6 C 0.07 2.43 6.17 85.56 0.53 2.96 16 7 C 0.44 21.68 7.82 87.66 0.69 22.37 16 8 O -0.62 -35.89 15.78 -3.07 -0.05 -35.94 16 9 N -0.57 -30.23 5.29 -306.97 -1.62 -31.85 16 10 C -0.34 -19.54 9.68 84.04 0.81 -18.72 16 11 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 12 C -0.01 -0.71 5.50 84.93 0.47 -0.25 16 13 N -0.92 -50.24 13.05 21.66 0.28 -49.96 16 14 Si 1.00 43.62 29.55 68.60 2.03 45.64 16 15 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 16 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 17 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 18 C 0.49 11.93 7.74 87.66 0.68 12.61 16 19 O -0.58 -20.66 16.01 -3.03 -0.05 -20.71 16 20 C 0.14 2.45 5.42 85.63 0.46 2.91 16 21 N -0.45 -9.96 3.11 -481.77 -1.50 -11.46 16 22 N -0.31 -5.78 12.53 -59.41 -0.74 -6.52 16 23 C 0.28 2.91 12.66 179.82 2.28 5.18 16 24 N -0.56 -8.49 3.14 -683.67 -2.15 -10.64 16 25 C 0.09 0.61 11.05 127.77 1.41 2.02 16 26 C 0.63 15.88 8.60 178.99 1.54 17.42 16 27 O -0.60 -19.50 17.71 -4.71 -0.08 -19.58 16 28 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.09 0.63 8.07 -2.38 -0.02 0.61 16 30 H 0.10 0.27 6.44 -2.39 -0.02 0.25 16 31 H 0.11 2.21 8.07 -2.39 -0.02 2.19 16 32 H 0.05 1.65 7.42 -2.39 -0.02 1.63 16 33 H 0.02 0.49 8.14 -2.38 -0.02 0.47 16 34 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.34 12.77 8.43 -89.70 -0.76 12.01 16 36 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.11 3.52 8.14 -2.39 -0.02 3.50 16 38 H 0.40 19.85 7.90 -92.71 -0.73 19.11 16 39 H 0.28 14.15 8.31 -92.71 -0.77 13.37 16 40 H 0.16 1.46 7.40 -2.39 -0.02 1.44 16 41 H 0.14 1.83 8.07 -2.38 -0.02 1.82 16 42 H 0.29 -0.84 8.06 -2.91 -0.02 -0.86 16 43 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 44 H 0.07 0.76 8.08 -2.39 -0.02 0.74 16 45 H 0.13 -0.15 8.14 -2.38 -0.02 -0.17 16 Total: -1.00 -95.55 393.46 1.24 -94.31 By element: Atomic # 1 Polarization: 33.59 SS G_CDS: -0.45 Total: 33.14 kcal Atomic # 6 Polarization: 42.61 SS G_CDS: 11.18 Total: 53.79 kcal Atomic # 7 Polarization: -139.31 SS G_CDS: -11.34 Total: -150.64 kcal Atomic # 8 Polarization: -76.06 SS G_CDS: -0.18 Total: -76.24 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Total: -95.55 1.24 -94.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714727384.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.351 kcal (2) G-P(sol) polarization free energy of solvation -95.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds