Wall clock time and date at job start Sat Apr 11 2020 06:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47163 * 2 1 4 4 N 1.46501 * 109.46957 * 239.99727 * 2 1 3 5 5 C 1.36932 * 119.99925 * 85.00497 * 4 2 1 6 6 H 1.08008 * 119.99871 * 359.97438 * 5 4 2 7 7 C 1.38817 * 120.00262 * 180.02562 * 5 4 2 8 8 N 1.31619 * 119.99840 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00065 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47309 * 89.99722 * 9 7 5 11 11 H 1.48495 * 109.47332 * 209.99929 * 9 7 5 12 12 H 1.48505 * 109.47128 * 329.99871 * 9 7 5 13 13 C 1.53001 * 109.47051 * 120.00088 * 2 1 3 14 14 H 1.09001 * 110.91492 * 57.54712 * 13 2 1 15 15 C 1.55156 * 111.00344 * 293.64899 * 13 2 1 16 16 C 1.54320 * 102.86308 * 206.22581 * 15 13 2 17 17 N 1.47017 * 107.27384 * 22.52643 * 16 15 13 18 18 C 1.34776 * 125.64782 * 180.96481 * 17 16 15 19 19 O 1.21553 * 119.99978 * 184.80815 * 18 17 16 20 20 C 1.47862 * 119.99833 * 4.80640 * 18 17 16 21 21 C 1.40640 * 120.25760 * 172.29437 * 20 18 17 22 22 N 1.30854 * 121.65424 * 180.02562 * 21 20 18 23 23 C 1.33588 * 121.58632 * 359.95246 * 22 21 20 24 24 C 1.40647 * 121.63389 * 180.02562 * 23 22 21 25 25 N 1.31150 * 120.04167 * 180.02562 * 24 23 22 26 26 C 1.32493 * 122.89098 * 0.02562 * 25 24 23 27 27 C 1.36320 * 121.71055 * 0.27615 * 26 25 24 28 28 C 1.40602 * 118.64882 * 359.45503 * 27 26 25 29 29 C 1.38984 * 120.26400 * 352.27288 * 20 18 17 30 30 C 1.47431 * 108.70421 * 0.70253 * 17 16 15 31 31 H 1.08998 * 109.47163 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46812 * 300.00185 * 1 2 3 33 33 H 1.08997 * 109.46850 * 59.99543 * 1 2 3 34 34 H 0.97002 * 120.00023 * 265.00045 * 4 2 1 35 35 H 0.96993 * 119.99663 * 180.02562 * 8 7 5 36 36 H 1.08991 * 110.72344 * 324.78609 * 15 13 2 37 37 H 1.09006 * 110.72092 * 87.88578 * 15 13 2 38 38 H 1.08997 * 109.98520 * 263.04486 * 16 15 13 39 39 H 1.09002 * 109.77127 * 141.88620 * 16 15 13 40 40 H 1.07999 * 119.17200 * 359.97438 * 21 20 18 41 41 H 1.08004 * 119.97891 * 0.04948 * 24 23 22 42 42 H 1.07997 * 119.14546 * 180.02562 * 26 25 24 43 43 H 1.08000 * 120.67654 * 179.75049 * 27 26 25 44 44 H 1.08001 * 121.11143 * 359.97438 * 29 20 18 45 45 H 1.09005 * 110.36249 * 94.93622 * 30 17 16 46 46 H 1.09003 * 110.36696 * 217.14817 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1962 5 6 2.1492 -0.0076 -2.3757 6 1 1.8920 1.0403 -2.4243 7 6 2.6114 -0.6621 -3.5093 8 7 2.9243 -1.9392 -3.4502 9 14 2.7892 0.2696 -5.1185 10 1 4.1514 0.8546 -5.2039 11 1 2.5782 -0.6617 -6.2557 12 1 1.7791 1.3568 -5.1752 13 6 2.0400 -0.7213 1.2492 14 1 1.6546 -1.7398 1.2951 15 6 1.6776 0.0688 2.5345 16 6 2.7744 -0.3692 3.5277 17 7 3.9164 -0.8467 2.7344 18 6 5.0701 -1.3337 3.2327 19 8 5.9833 -1.6194 2.4830 20 6 5.2250 -1.5205 4.6912 21 6 6.3581 -2.1760 5.2054 22 7 6.5227 -2.3565 6.4909 23 6 5.6223 -1.9259 7.3789 24 6 5.7985 -2.1189 8.7609 25 7 4.8942 -1.6836 9.6052 26 6 3.7933 -1.0553 9.2197 27 6 3.5243 -0.8231 7.9036 28 6 4.4516 -1.2560 6.9395 29 6 4.2523 -1.0492 5.5650 30 6 3.5881 -0.7104 1.3036 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 2.2490 -1.6319 -1.1526 35 1 3.2476 -2.3964 -4.2422 36 1 1.7231 1.1425 2.3529 37 1 0.6908 -0.2180 2.8981 38 1 2.4024 -1.1729 4.1630 39 1 3.0777 0.4800 4.1402 40 1 7.1108 -2.5403 4.5220 41 1 6.6792 -2.6256 9.1271 42 1 3.0888 -0.7219 9.9673 43 1 2.6196 -0.3128 7.6078 44 1 3.3722 -0.5414 5.1989 45 1 3.9748 0.2312 0.9137 46 1 3.9951 -1.5495 0.7394 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724537655.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:07 Heat of formation + Delta-G solvation = 68.422918 kcal Electronic energy + Delta-G solvation = -28662.276269 eV Core-core repulsion = 24746.049627 eV Total energy + Delta-G solvation = -3916.226642 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.73436 -40.25491 -38.45996 -37.65300 -35.52436 -34.24521 -32.67107 -31.96035 -30.94683 -30.59246 -28.87411 -28.22929 -26.03026 -24.95818 -24.08635 -23.50443 -23.00570 -21.62733 -20.38169 -19.77800 -19.10199 -17.92907 -17.51967 -17.11281 -16.73290 -16.14108 -15.77482 -15.44307 -15.21963 -14.84391 -14.68107 -14.39441 -14.04523 -13.92208 -13.70938 -13.45124 -13.19382 -13.11764 -12.97213 -12.71172 -12.65721 -12.23933 -12.15480 -11.55371 -11.39869 -11.27121 -10.94716 -10.85783 -10.68302 -10.65215 -10.43118 -10.28139 -10.22192 -9.94532 -9.73376 -9.69810 -9.66761 -8.95259 -8.93028 -8.73782 -7.00809 -5.79089 -3.08631 -0.38688 0.09139 1.29587 2.21378 2.73855 2.99194 3.42150 3.47074 3.49007 3.63931 3.68112 3.85129 3.97382 4.06979 4.22510 4.27557 4.39150 4.51236 4.55215 4.70940 4.76579 4.87090 4.96546 5.06102 5.07735 5.19759 5.21905 5.44597 5.49810 5.53909 5.54959 5.73863 5.78501 5.80553 5.87472 5.90066 6.06764 6.08316 6.17014 6.25074 6.29914 6.45515 6.54291 6.77232 6.99711 7.22662 7.35924 7.49242 7.67016 7.96284 8.38691 9.50263 10.05968 10.40185 11.43287 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022337 B = 0.002304 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.221484 B =12150.598440 C =13162.549065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.185 3.815 3 H 0.050 0.950 4 N -0.724 5.724 5 C -0.240 4.240 6 H 0.070 0.930 7 C -0.011 4.011 8 N -0.930 5.930 9 Si 0.905 3.095 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.282 1.282 13 C -0.102 4.102 14 H 0.082 0.918 15 C -0.127 4.127 16 C 0.085 3.915 17 N -0.609 5.609 18 C 0.571 3.429 19 O -0.522 6.522 20 C -0.157 4.157 21 C 0.184 3.816 22 N -0.459 5.459 23 C 0.079 3.921 24 C 0.163 3.837 25 N -0.470 5.470 26 C 0.071 3.929 27 C -0.135 4.135 28 C -0.086 4.086 29 C -0.059 4.059 30 C 0.121 3.879 31 H 0.046 0.954 32 H 0.037 0.963 33 H 0.054 0.946 34 H 0.384 0.616 35 H 0.255 0.745 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.179 0.821 41 H 0.174 0.826 42 H 0.160 0.840 43 H 0.145 0.855 44 H 0.181 0.819 45 H 0.077 0.923 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.488 2.982 25.475 25.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.075 3.925 3 H 0.068 0.932 4 N -0.366 5.366 5 C -0.371 4.371 6 H 0.088 0.912 7 C -0.208 4.208 8 N -0.578 5.578 9 Si 0.736 3.264 10 H -0.217 1.217 11 H -0.218 1.218 12 H -0.208 1.208 13 C -0.122 4.122 14 H 0.101 0.899 15 C -0.165 4.165 16 C -0.037 4.037 17 N -0.342 5.342 18 C 0.358 3.642 19 O -0.399 6.399 20 C -0.164 4.164 21 C 0.009 3.991 22 N -0.168 5.168 23 C -0.044 4.044 24 C -0.011 4.011 25 N -0.179 5.179 26 C -0.071 4.071 27 C -0.156 4.156 28 C -0.093 4.093 29 C -0.085 4.085 30 C 0.000 4.000 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.218 0.782 35 H 0.065 0.935 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.196 0.804 41 H 0.191 0.809 42 H 0.177 0.823 43 H 0.162 0.838 44 H 0.197 0.803 45 H 0.095 0.905 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.202 2.438 26.297 26.411 hybrid contribution -0.800 0.701 -2.161 2.408 sum -1.002 3.139 24.137 24.361 Atomic orbital electron populations 1.22447 0.99037 1.00921 1.00031 1.20152 0.91956 0.95151 0.85278 0.93239 1.42412 1.78174 1.10714 1.05268 1.19180 1.36886 0.93805 0.87256 0.91223 1.24738 1.02041 0.95937 0.98061 1.69650 1.50601 1.08625 1.28969 0.86225 0.77799 0.78590 0.83758 1.21699 1.21819 1.20824 1.22699 0.93898 1.00425 0.95196 0.89926 1.22754 0.97521 1.01405 0.94809 1.22574 0.87530 0.98422 0.95208 1.48487 1.14619 1.61784 1.09317 1.17593 0.81760 0.78115 0.86718 1.90850 1.38757 1.50743 1.59513 1.21177 0.97605 1.02929 0.94678 1.23250 0.94331 0.90181 0.91295 1.68022 1.28271 1.18063 1.02397 1.20139 0.91413 0.96892 0.95976 1.23163 0.97297 0.94118 0.86478 1.67463 1.02277 1.08886 1.39255 1.22309 0.94406 0.95623 0.94796 1.21981 0.99622 1.00356 0.93592 1.18972 0.96102 0.99586 0.94648 1.23474 0.99306 0.94246 0.91470 1.22360 0.95243 1.03650 0.78791 0.93487 0.94432 0.92684 0.78248 0.93463 0.89941 0.89704 0.90674 0.90692 0.80446 0.80877 0.82251 0.83755 0.80258 0.90524 0.89384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.59 9.34 37.16 0.35 -2.24 16 2 C 0.19 3.21 2.41 -67.93 -0.16 3.05 16 3 H 0.05 0.88 8.05 -51.93 -0.42 0.46 16 4 N -0.72 -16.84 4.82 -53.42 -0.26 -17.09 16 5 C -0.24 -6.36 9.93 -15.06 -0.15 -6.51 16 6 H 0.07 1.80 7.83 -52.48 -0.41 1.38 16 7 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 8 N -0.93 -27.62 13.06 55.49 0.72 -26.90 16 9 Si 0.91 22.07 29.55 -169.99 -5.02 17.05 16 10 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 C -0.10 -1.41 2.62 -88.47 -0.23 -1.64 16 14 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 15 C -0.13 -1.18 5.59 -24.90 -0.14 -1.32 16 16 C 0.09 0.73 4.86 -3.07 -0.01 0.72 16 17 N -0.61 -7.89 3.33 -173.01 -0.58 -8.46 16 18 C 0.57 8.17 7.81 -12.32 -0.10 8.08 16 19 O -0.52 -9.51 16.67 5.32 0.09 -9.42 16 20 C -0.16 -1.81 5.89 -104.78 -0.62 -2.42 16 21 C 0.18 2.12 10.73 -17.06 -0.18 1.94 16 22 N -0.46 -5.27 10.33 -10.65 -0.11 -5.38 16 23 C 0.08 0.83 6.62 -84.81 -0.56 0.27 16 24 C 0.16 1.49 11.25 -16.93 -0.19 1.30 16 25 N -0.47 -4.33 10.28 -13.11 -0.13 -4.46 16 26 C 0.07 0.51 11.08 -17.96 -0.20 0.31 16 27 C -0.14 -0.91 9.88 -39.38 -0.39 -1.30 16 28 C -0.09 -0.79 5.75 -106.80 -0.61 -1.40 16 29 C -0.06 -0.53 8.48 -38.49 -0.33 -0.86 16 30 C 0.12 1.89 6.07 -2.53 -0.02 1.87 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.04 0.46 7.50 -51.93 -0.39 0.07 16 33 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.38 9.65 7.80 -40.82 -0.32 9.34 16 35 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.08 0.74 8.01 -51.93 -0.42 0.32 16 37 H 0.08 0.63 8.13 -51.93 -0.42 0.21 16 38 H 0.08 0.52 6.69 -51.93 -0.35 0.17 16 39 H 0.08 0.49 6.78 -51.93 -0.35 0.14 16 40 H 0.18 1.93 7.65 -52.49 -0.40 1.53 16 41 H 0.17 1.23 8.06 -52.48 -0.42 0.81 16 42 H 0.16 0.68 8.06 -52.49 -0.42 0.25 16 43 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 44 H 0.18 1.16 2.90 -54.29 -0.16 1.00 16 45 H 0.08 1.30 8.04 -51.93 -0.42 0.88 16 46 H 0.09 1.65 8.09 -51.93 -0.42 1.23 16 LS Contribution 377.51 15.07 5.69 5.69 Total: -1.00 -33.35 377.51 -9.38 -42.73 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -6.14 Total: 6.83 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: -3.64 Total: -0.58 kcal Atomic # 7 Polarization: -61.94 SS G_CDS: -0.35 Total: -62.30 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.09 Total: -9.42 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.35 -9.38 -42.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724537655.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.149 kcal (2) G-P(sol) polarization free energy of solvation -33.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds