Wall clock time and date at job start Sat Apr 11 2020 06:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47163 * 2 1 4 4 N 1.46501 * 109.46957 * 239.99727 * 2 1 3 5 5 C 1.36932 * 119.99925 * 85.00497 * 4 2 1 6 6 H 1.08008 * 119.99871 * 359.97438 * 5 4 2 7 7 C 1.38817 * 120.00262 * 180.02562 * 5 4 2 8 8 N 1.31619 * 119.99840 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00065 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47309 * 89.99722 * 9 7 5 11 11 H 1.48495 * 109.47332 * 209.99929 * 9 7 5 12 12 H 1.48505 * 109.47128 * 329.99871 * 9 7 5 13 13 C 1.53001 * 109.47051 * 120.00088 * 2 1 3 14 14 H 1.09001 * 110.91492 * 57.54712 * 13 2 1 15 15 C 1.55156 * 111.00344 * 293.64899 * 13 2 1 16 16 C 1.54320 * 102.86308 * 206.22581 * 15 13 2 17 17 N 1.47017 * 107.27384 * 22.52643 * 16 15 13 18 18 C 1.34776 * 125.64782 * 180.96481 * 17 16 15 19 19 O 1.21553 * 119.99978 * 184.80815 * 18 17 16 20 20 C 1.47862 * 119.99833 * 4.80640 * 18 17 16 21 21 C 1.40640 * 120.25760 * 172.29437 * 20 18 17 22 22 N 1.30854 * 121.65424 * 180.02562 * 21 20 18 23 23 C 1.33588 * 121.58632 * 359.95246 * 22 21 20 24 24 C 1.40647 * 121.63389 * 180.02562 * 23 22 21 25 25 N 1.31150 * 120.04167 * 180.02562 * 24 23 22 26 26 C 1.32493 * 122.89098 * 0.02562 * 25 24 23 27 27 C 1.36320 * 121.71055 * 0.27615 * 26 25 24 28 28 C 1.40602 * 118.64882 * 359.45503 * 27 26 25 29 29 C 1.38984 * 120.26400 * 352.27288 * 20 18 17 30 30 C 1.47431 * 108.70421 * 0.70253 * 17 16 15 31 31 H 1.08998 * 109.47163 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46812 * 300.00185 * 1 2 3 33 33 H 1.08997 * 109.46850 * 59.99543 * 1 2 3 34 34 H 0.97002 * 120.00023 * 265.00045 * 4 2 1 35 35 H 0.96993 * 119.99663 * 180.02562 * 8 7 5 36 36 H 1.08991 * 110.72344 * 324.78609 * 15 13 2 37 37 H 1.09006 * 110.72092 * 87.88578 * 15 13 2 38 38 H 1.08997 * 109.98520 * 263.04486 * 16 15 13 39 39 H 1.09002 * 109.77127 * 141.88620 * 16 15 13 40 40 H 1.07999 * 119.17200 * 359.97438 * 21 20 18 41 41 H 1.08004 * 119.97891 * 0.04948 * 24 23 22 42 42 H 1.07997 * 119.14546 * 180.02562 * 26 25 24 43 43 H 1.08000 * 120.67654 * 179.75049 * 27 26 25 44 44 H 1.08001 * 121.11143 * 359.97438 * 29 20 18 45 45 H 1.09005 * 110.36249 * 94.93622 * 30 17 16 46 46 H 1.09003 * 110.36696 * 217.14817 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1962 5 6 2.1492 -0.0076 -2.3757 6 1 1.8920 1.0403 -2.4243 7 6 2.6114 -0.6621 -3.5093 8 7 2.9243 -1.9392 -3.4502 9 14 2.7892 0.2696 -5.1185 10 1 4.1514 0.8546 -5.2039 11 1 2.5782 -0.6617 -6.2557 12 1 1.7791 1.3568 -5.1752 13 6 2.0400 -0.7213 1.2492 14 1 1.6546 -1.7398 1.2951 15 6 1.6776 0.0688 2.5345 16 6 2.7744 -0.3692 3.5277 17 7 3.9164 -0.8467 2.7344 18 6 5.0701 -1.3337 3.2327 19 8 5.9833 -1.6194 2.4830 20 6 5.2250 -1.5205 4.6912 21 6 6.3581 -2.1760 5.2054 22 7 6.5227 -2.3565 6.4909 23 6 5.6223 -1.9259 7.3789 24 6 5.7985 -2.1189 8.7609 25 7 4.8942 -1.6836 9.6052 26 6 3.7933 -1.0553 9.2197 27 6 3.5243 -0.8231 7.9036 28 6 4.4516 -1.2560 6.9395 29 6 4.2523 -1.0492 5.5650 30 6 3.5881 -0.7104 1.3036 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 2.2490 -1.6319 -1.1526 35 1 3.2476 -2.3964 -4.2422 36 1 1.7231 1.1425 2.3529 37 1 0.6908 -0.2180 2.8981 38 1 2.4024 -1.1729 4.1630 39 1 3.0777 0.4800 4.1402 40 1 7.1108 -2.5403 4.5220 41 1 6.6792 -2.6256 9.1271 42 1 3.0888 -0.7219 9.9673 43 1 2.6196 -0.3128 7.6078 44 1 3.3722 -0.5414 5.1989 45 1 3.9748 0.2312 0.9137 46 1 3.9951 -1.5495 0.7394 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724537655.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:06 Heat of formation + Delta-G solvation = 45.350884 kcal Electronic energy + Delta-G solvation = -28663.276748 eV Core-core repulsion = 24746.049627 eV Total energy + Delta-G solvation = -3917.227120 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.48665 -41.21554 -39.38223 -38.65236 -36.95613 -35.14257 -34.20808 -32.91596 -31.96469 -31.49527 -30.14768 -29.57755 -26.84488 -26.02628 -25.58794 -24.38118 -23.88570 -22.76771 -21.32386 -21.07772 -19.91537 -19.13931 -18.66875 -18.21125 -17.59387 -17.26687 -16.75044 -16.62487 -16.11652 -15.95168 -15.62118 -15.42662 -15.19523 -15.18320 -14.72720 -14.43952 -14.38852 -14.19726 -13.93209 -13.71158 -13.57138 -13.41942 -13.35762 -13.09988 -12.81937 -12.48739 -12.30980 -12.18139 -12.03815 -11.96328 -11.68015 -11.53674 -11.45698 -11.29562 -10.97248 -10.92448 -10.53233 -10.47967 -9.80276 -9.54141 -8.97123 -7.91737 -5.18670 -1.08366 -0.64446 0.62814 1.35854 1.46528 1.48083 1.55716 1.71062 2.11753 2.57213 2.93448 2.93758 3.13518 3.27198 3.41896 3.46530 3.49263 3.53014 3.60553 3.72721 3.87324 3.91923 4.18466 4.20556 4.24121 4.28355 4.34764 4.44276 4.55130 4.61586 4.64150 4.66634 4.82233 4.86236 4.89020 4.92508 4.96436 5.07196 5.13559 5.20631 5.22508 5.33327 5.44317 5.50496 5.55519 5.68836 6.30659 6.31842 6.52381 6.85890 6.89073 7.36793 8.15697 8.35282 9.31907 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022337 B = 0.002304 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.221484 B =12150.598440 C =13162.549065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.178 3.822 3 H 0.048 0.952 4 N -0.739 5.739 5 C -0.228 4.228 6 H 0.077 0.923 7 C -0.081 4.081 8 N -0.971 5.971 9 Si 0.966 3.034 10 H -0.293 1.293 11 H -0.300 1.300 12 H -0.266 1.266 13 C -0.094 4.094 14 H 0.078 0.922 15 C -0.113 4.113 16 C 0.075 3.925 17 N -0.607 5.607 18 C 0.567 3.433 19 O -0.580 6.580 20 C -0.176 4.176 21 C 0.172 3.828 22 N -0.475 5.475 23 C 0.060 3.940 24 C 0.148 3.852 25 N -0.482 5.482 26 C 0.064 3.936 27 C -0.117 4.117 28 C -0.099 4.099 29 C -0.030 4.030 30 C 0.125 3.875 31 H 0.040 0.960 32 H 0.084 0.916 33 H 0.031 0.969 34 H 0.370 0.630 35 H 0.247 0.753 36 H 0.094 0.906 37 H 0.120 0.880 38 H 0.105 0.895 39 H 0.111 0.889 40 H 0.168 0.832 41 H 0.181 0.819 42 H 0.193 0.807 43 H 0.190 0.810 44 H 0.213 0.787 45 H 0.057 0.943 46 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.872 5.435 28.930 29.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.070 3.930 3 H 0.066 0.934 4 N -0.379 5.379 5 C -0.360 4.360 6 H 0.095 0.905 7 C -0.272 4.272 8 N -0.623 5.623 9 Si 0.796 3.204 10 H -0.220 1.220 11 H -0.227 1.227 12 H -0.191 1.191 13 C -0.114 4.114 14 H 0.097 0.903 15 C -0.151 4.151 16 C -0.046 4.046 17 N -0.338 5.338 18 C 0.356 3.644 19 O -0.461 6.461 20 C -0.183 4.183 21 C -0.003 4.003 22 N -0.184 5.184 23 C -0.063 4.063 24 C -0.024 4.024 25 N -0.191 5.191 26 C -0.079 4.079 27 C -0.136 4.136 28 C -0.106 4.106 29 C -0.055 4.055 30 C 0.002 3.998 31 H 0.059 0.941 32 H 0.103 0.897 33 H 0.050 0.950 34 H 0.201 0.799 35 H 0.056 0.944 36 H 0.112 0.888 37 H 0.139 0.861 38 H 0.123 0.877 39 H 0.129 0.871 40 H 0.185 0.815 41 H 0.198 0.802 42 H 0.210 0.790 43 H 0.207 0.793 44 H 0.229 0.771 45 H 0.075 0.925 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -3.643 4.948 29.825 30.452 hybrid contribution 0.184 0.005 -3.033 3.039 sum -3.460 4.954 26.792 27.465 Atomic orbital electron populations 1.22277 0.96871 1.00922 1.01208 1.20454 0.93239 0.94823 0.84527 0.93370 1.42675 1.78453 1.10254 1.06475 1.19588 1.34081 0.94083 0.88255 0.90481 1.25501 1.03540 0.96806 1.01401 1.69814 1.53039 1.10246 1.29189 0.85244 0.77719 0.77548 0.79928 1.22025 1.22673 1.19109 1.22514 0.91894 1.00802 0.96167 0.90314 1.22804 0.99396 1.01285 0.91590 1.23018 0.85652 1.00667 0.95227 1.48507 1.15498 1.61254 1.08568 1.18072 0.81333 0.77215 0.87741 1.90812 1.40851 1.53293 1.61104 1.20834 0.99034 1.05438 0.92949 1.23157 0.94738 0.90942 0.91459 1.67982 1.29243 1.18831 1.02322 1.20443 0.92124 0.97474 0.96289 1.23295 0.98064 0.94931 0.86136 1.67503 1.02988 1.09009 1.39574 1.22943 0.94076 0.94763 0.96122 1.22425 0.99983 0.98698 0.92543 1.19230 0.96290 0.99781 0.95272 1.23764 0.98800 0.92074 0.90831 1.22058 0.96771 1.00580 0.80386 0.94071 0.89695 0.94987 0.79910 0.94380 0.88759 0.86142 0.87699 0.87135 0.81487 0.80159 0.79020 0.79315 0.77104 0.92465 0.94125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.42 9.34 71.98 0.67 -3.75 16 2 C 0.18 5.97 2.41 44.99 0.11 6.08 16 3 H 0.05 1.64 8.05 -2.39 -0.02 1.62 16 4 N -0.74 -35.13 4.82 -322.92 -1.56 -36.69 16 5 C -0.23 -12.26 9.93 84.04 0.83 -11.42 16 6 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16 7 C -0.08 -4.62 5.50 84.86 0.47 -4.16 16 8 N -0.97 -60.17 13.06 21.65 0.28 -59.89 16 9 Si 0.97 46.43 29.55 68.60 2.03 48.46 16 10 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 11 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 12 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 13 C -0.09 -2.44 2.62 -9.40 -0.02 -2.47 16 14 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 15 C -0.11 -1.51 5.59 31.78 0.18 -1.34 16 16 C 0.07 0.92 4.86 86.73 0.42 1.34 16 17 N -0.61 -15.17 3.33 -819.55 -2.73 -17.90 16 18 C 0.57 16.68 7.81 86.79 0.68 17.36 16 19 O -0.58 -22.99 16.67 -3.88 -0.06 -23.05 16 20 C -0.18 -3.95 5.89 -19.96 -0.12 -4.07 16 21 C 0.17 4.18 10.73 85.42 0.92 5.09 16 22 N -0.48 -11.16 10.33 -187.60 -1.94 -13.09 16 23 C 0.06 1.18 6.62 40.36 0.27 1.45 16 24 C 0.15 2.56 11.25 85.38 0.96 3.52 16 25 N -0.48 -7.67 10.28 -195.38 -2.01 -9.68 16 26 C 0.06 0.63 11.08 84.15 0.93 1.56 16 27 C -0.12 -0.93 9.88 22.40 0.22 -0.71 16 28 C -0.10 -1.47 5.75 -21.27 -0.12 -1.59 16 29 C -0.03 -0.42 8.48 22.98 0.19 -0.23 16 30 C 0.12 4.03 6.07 86.85 0.53 4.56 16 31 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.08 1.66 7.50 -2.39 -0.02 1.64 16 33 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.37 19.48 7.80 -92.71 -0.72 18.76 16 35 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 36 H 0.09 1.13 8.01 -2.39 -0.02 1.11 16 37 H 0.12 0.89 8.13 -2.38 -0.02 0.87 16 38 H 0.11 0.77 6.69 -2.39 -0.02 0.76 16 39 H 0.11 0.70 6.78 -2.39 -0.02 0.68 16 40 H 0.17 4.18 7.65 -2.91 -0.02 4.16 16 41 H 0.18 2.56 8.06 -2.91 -0.02 2.54 16 42 H 0.19 0.57 8.06 -2.91 -0.02 0.54 16 43 H 0.19 -0.18 8.06 -2.91 -0.02 -0.21 16 44 H 0.21 1.43 2.90 -4.60 -0.01 1.41 16 45 H 0.06 2.03 8.04 -2.38 -0.02 2.01 16 46 H 0.04 1.67 8.09 -2.39 -0.02 1.65 16 Total: -1.00 -80.42 377.51 1.43 -79.00 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: 0.29 Total: 21.61 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: 7.11 Total: 11.24 kcal Atomic # 7 Polarization: -129.30 SS G_CDS: -7.95 Total: -137.25 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: -0.06 Total: -23.05 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Total: -80.42 1.43 -79.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724537655.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.346 kcal (2) G-P(sol) polarization free energy of solvation -80.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds