Wall clock time and date at job start Sat Apr 11 2020 06:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.47064 * 2 1 4 4 N 1.46491 * 109.47269 * 120.00715 * 2 1 3 5 5 C 1.36943 * 119.99852 * 274.71913 * 4 2 1 6 6 H 1.08004 * 119.99794 * 0.02562 * 5 4 2 7 7 C 1.38815 * 119.99988 * 179.97438 * 5 4 2 8 8 N 1.31617 * 119.99562 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 120.00067 * 0.02562 * 7 5 4 10 10 H 1.48509 * 109.47058 * 90.00072 * 9 7 5 11 11 H 1.48494 * 109.46999 * 209.99621 * 9 7 5 12 12 H 1.48499 * 109.47346 * 330.00052 * 9 7 5 13 13 C 1.53002 * 109.46608 * 240.00436 * 2 1 3 14 14 H 1.08996 * 110.88815 * 299.29781 * 13 2 1 15 15 C 1.55160 * 111.00631 * 63.18091 * 13 2 1 16 16 C 1.54322 * 102.94152 * 153.57721 * 15 13 2 17 17 N 1.47029 * 107.27129 * 337.80374 * 16 15 13 18 18 C 1.34771 * 125.64424 * 178.97410 * 17 16 15 19 19 O 1.21554 * 119.99734 * 175.02573 * 18 17 16 20 20 C 1.47859 * 120.00541 * 355.02555 * 18 17 16 21 21 C 1.40640 * 120.26676 * 187.79282 * 20 18 17 22 22 N 1.30845 * 121.66171 * 179.97438 * 21 20 18 23 23 C 1.33588 * 121.58552 * 0.02562 * 22 21 20 24 24 C 1.40645 * 121.63032 * 180.02562 * 23 22 21 25 25 N 1.31157 * 120.03618 * 179.97438 * 24 23 22 26 26 C 1.32489 * 122.89106 * 0.02562 * 25 24 23 27 27 C 1.36316 * 121.71670 * 359.97438 * 26 25 24 28 28 C 1.40601 * 118.64751 * 359.97438 * 27 26 25 29 29 C 1.38993 * 120.26011 * 7.52124 * 20 18 17 30 30 C 1.47460 * 108.72027 * 358.98022 * 17 16 15 31 31 H 1.09002 * 109.47128 * 59.99288 * 1 2 3 32 32 H 1.08999 * 109.47064 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46310 * 299.99674 * 1 2 3 34 34 H 0.96998 * 120.00846 * 94.99639 * 4 2 1 35 35 H 0.97004 * 119.99948 * 180.02562 * 8 7 5 36 36 H 1.09001 * 110.71834 * 271.93595 * 15 13 2 37 37 H 1.08993 * 110.71810 * 35.03085 * 15 13 2 38 38 H 1.09003 * 109.88753 * 97.22352 * 16 15 13 39 39 H 1.09003 * 109.88242 * 218.23217 * 16 15 13 40 40 H 1.08006 * 119.16309 * 0.02562 * 21 20 18 41 41 H 1.07993 * 119.97985 * 359.95241 * 24 23 22 42 42 H 1.08002 * 119.13945 * 179.97438 * 26 25 24 43 43 H 1.07993 * 120.67780 * 180.02562 * 27 26 25 44 44 H 1.08005 * 121.11040 * 359.97438 * 29 20 18 45 45 H 1.09003 * 110.34742 * 265.24617 * 30 17 16 46 46 H 1.09005 * 110.40458 * 142.91451 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 2.1547 -0.0063 2.3743 6 1 1.9017 1.0426 2.4218 7 6 2.6169 -0.6609 3.5077 8 7 2.7473 -0.0031 4.6403 9 14 3.0537 -2.4752 3.4256 10 1 4.4853 -2.6236 3.0593 11 1 2.8143 -3.1024 4.7501 12 1 2.2092 -3.1419 2.4022 13 6 2.0399 -0.7212 -1.2493 14 1 1.6996 -1.7565 -1.2665 15 6 1.6091 0.0273 -2.5384 16 6 2.7007 -0.3745 -3.5525 17 7 3.8814 -0.7903 -2.7812 18 6 5.0432 -1.2331 -3.3013 19 8 5.9867 -1.4650 -2.5708 20 6 5.1702 -1.4369 -4.7602 21 6 6.3179 -2.0510 -5.2929 22 7 6.4586 -2.2452 -6.5792 23 6 5.5184 -1.8691 -7.4506 24 6 5.6684 -2.0780 -8.8333 25 7 4.7251 -1.6966 -9.6610 26 6 3.6083 -1.1092 -9.2575 27 6 3.3649 -0.8608 -7.9394 28 6 4.3310 -1.2428 -6.9920 29 6 4.1538 -1.0282 -5.6156 30 6 3.5841 -0.6427 -1.3445 31 1 -0.3633 0.5140 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3632 0.5138 0.8900 34 1 2.2491 -1.6319 1.1525 35 1 3.0707 -0.4604 5.4323 36 1 0.6287 -0.3125 -2.8722 37 1 1.6075 1.1051 -2.3761 38 1 2.3489 -1.2031 -4.1672 39 1 2.9498 0.4770 -4.1859 40 1 7.1025 -2.3709 -4.6232 41 1 6.5609 -2.5523 -9.2138 42 1 2.8714 -0.8195 -9.9921 43 1 2.4484 -0.3812 -7.6292 44 1 3.2591 -0.5583 -5.2347 45 1 3.9380 0.3222 -0.9813 46 1 4.0408 -1.4534 -0.7767 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724537659.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:14 Heat of formation + Delta-G solvation = 72.560548 kcal Electronic energy + Delta-G solvation = -28745.314309 eV Core-core repulsion = 24829.267088 eV Total energy + Delta-G solvation = -3916.047221 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.79535 -40.35126 -38.54720 -37.75442 -35.69743 -34.32034 -32.70782 -32.01563 -31.04566 -30.77888 -29.22649 -28.53173 -26.09873 -25.01811 -24.01794 -23.57660 -22.98670 -21.52296 -20.47204 -19.99635 -19.18815 -18.00844 -17.68750 -17.43146 -16.84444 -16.19279 -15.86777 -15.51718 -15.27730 -14.92946 -14.74390 -14.42683 -14.25450 -13.97127 -13.68750 -13.62747 -13.25101 -13.17699 -12.93324 -12.80839 -12.63370 -12.44315 -12.31704 -11.84250 -11.61492 -11.33432 -11.07956 -10.96705 -10.74579 -10.70842 -10.52501 -10.32384 -10.26378 -10.03389 -9.79322 -9.76750 -9.61831 -8.98429 -8.98143 -8.85198 -7.33085 -5.80352 -3.16760 -0.44382 0.03565 1.24137 2.14747 2.63324 2.91242 3.35904 3.39279 3.45117 3.58319 3.62389 3.79189 3.91362 4.01549 4.15997 4.20756 4.30853 4.44260 4.56341 4.58029 4.67291 4.80287 4.90592 4.95875 5.01205 5.05471 5.16460 5.31746 5.41921 5.46860 5.49214 5.54615 5.62822 5.67873 5.78211 5.82506 5.95640 5.98521 6.03225 6.11419 6.18651 6.27390 6.36493 6.67954 6.89746 7.16039 7.26035 7.44283 7.85872 7.94137 8.38236 9.15956 9.88678 10.07042 11.37792 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020346 B = 0.002473 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.864386 B =11317.745252 C =12335.050485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.190 3.810 3 H 0.059 0.941 4 N -0.749 5.749 5 C -0.244 4.244 6 H 0.090 0.910 7 C 0.007 3.993 8 N -0.932 5.932 9 Si 0.881 3.119 10 H -0.283 1.283 11 H -0.291 1.291 12 H -0.278 1.278 13 C -0.107 4.107 14 H 0.082 0.918 15 C -0.125 4.125 16 C 0.085 3.915 17 N -0.609 5.609 18 C 0.571 3.429 19 O -0.523 6.523 20 C -0.158 4.158 21 C 0.183 3.817 22 N -0.459 5.459 23 C 0.079 3.921 24 C 0.163 3.837 25 N -0.469 5.469 26 C 0.072 3.928 27 C -0.135 4.135 28 C -0.086 4.086 29 C -0.059 4.059 30 C 0.117 3.883 31 H 0.040 0.960 32 H 0.045 0.955 33 H 0.059 0.941 34 H 0.361 0.639 35 H 0.260 0.740 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.178 0.822 41 H 0.174 0.826 42 H 0.161 0.839 43 H 0.145 0.855 44 H 0.181 0.819 45 H 0.080 0.920 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.512 -1.265 -28.465 28.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.080 3.920 3 H 0.077 0.923 4 N -0.391 5.391 5 C -0.374 4.374 6 H 0.108 0.892 7 C -0.189 4.189 8 N -0.580 5.580 9 Si 0.712 3.288 10 H -0.209 1.209 11 H -0.218 1.218 12 H -0.204 1.204 13 C -0.127 4.127 14 H 0.100 0.900 15 C -0.163 4.163 16 C -0.038 4.038 17 N -0.342 5.342 18 C 0.359 3.641 19 O -0.400 6.400 20 C -0.165 4.165 21 C 0.009 3.991 22 N -0.167 5.167 23 C -0.044 4.044 24 C -0.010 4.010 25 N -0.178 5.178 26 C -0.071 4.071 27 C -0.156 4.156 28 C -0.093 4.093 29 C -0.084 4.084 30 C -0.004 4.004 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.193 0.807 35 H 0.070 0.930 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.195 0.805 41 H 0.191 0.809 42 H 0.178 0.822 43 H 0.163 0.837 44 H 0.198 0.802 45 H 0.099 0.901 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.225 -1.704 -29.269 29.319 hybrid contribution -0.630 -0.786 1.354 1.687 sum -0.855 -2.491 -27.915 28.039 Atomic orbital electron populations 1.22419 0.98506 1.00949 1.00602 1.20122 0.92152 0.95460 0.84228 0.92295 1.42787 1.79816 1.09312 1.07227 1.19019 1.37281 0.95368 0.85716 0.89184 1.24660 1.01284 0.97405 0.95576 1.69694 1.52374 1.35563 1.00359 0.86605 0.78615 0.86801 0.76814 1.20910 1.21774 1.20389 1.22749 0.93747 1.00699 0.95489 0.89965 1.22742 0.97515 1.01835 0.94254 1.22591 0.86600 0.99110 0.95472 1.48471 1.12722 1.63895 1.09153 1.17607 0.81924 0.77916 0.86641 1.90847 1.37044 1.51271 1.60804 1.21150 0.97264 1.03437 0.94645 1.23239 0.94879 0.89896 0.91076 1.68019 1.28395 1.17454 1.02834 1.20144 0.90978 0.97237 0.96037 1.23170 0.97344 0.93893 0.86632 1.67469 1.01557 1.09405 1.39386 1.22319 0.94559 0.95564 0.94621 1.21982 0.99449 1.00381 0.93747 1.18972 0.95914 0.99785 0.94638 1.23482 0.99535 0.93805 0.91608 1.22395 0.95584 1.03515 0.78870 0.94054 0.93600 0.92192 0.80668 0.93026 0.89562 0.89699 0.90634 0.90511 0.80481 0.80855 0.82210 0.83725 0.80237 0.90127 0.89830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.47 9.31 37.16 0.35 -2.12 16 2 C 0.19 3.13 2.40 -67.93 -0.16 2.97 16 3 H 0.06 1.01 8.07 -51.93 -0.42 0.59 16 4 N -0.75 -16.31 4.70 -53.42 -0.25 -16.56 16 5 C -0.24 -6.54 10.41 -15.06 -0.16 -6.70 16 6 H 0.09 2.59 8.06 -52.48 -0.42 2.17 16 7 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 8 N -0.93 -28.81 13.97 55.49 0.78 -28.03 16 9 Si 0.88 21.85 27.73 -169.99 -4.71 17.14 16 10 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 11 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 12 H -0.28 -6.44 6.52 56.52 0.37 -6.07 16 13 C -0.11 -1.36 2.63 -88.47 -0.23 -1.59 16 14 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 15 C -0.13 -1.06 5.44 -24.90 -0.14 -1.19 16 16 C 0.08 0.66 4.87 -3.06 -0.01 0.65 16 17 N -0.61 -7.34 3.33 -173.09 -0.58 -7.91 16 18 C 0.57 7.71 7.81 -12.33 -0.10 7.62 16 19 O -0.52 -9.05 16.67 5.32 0.09 -8.96 16 20 C -0.16 -1.72 5.89 -104.77 -0.62 -2.33 16 21 C 0.18 2.02 10.73 -17.07 -0.18 1.83 16 22 N -0.46 -5.05 10.33 -10.65 -0.11 -5.16 16 23 C 0.08 0.80 6.62 -84.81 -0.56 0.24 16 24 C 0.16 1.44 11.25 -16.93 -0.19 1.25 16 25 N -0.47 -4.16 10.28 -13.11 -0.13 -4.29 16 26 C 0.07 0.49 11.08 -17.96 -0.20 0.29 16 27 C -0.14 -0.85 9.88 -39.38 -0.39 -1.24 16 28 C -0.09 -0.75 5.75 -106.80 -0.61 -1.36 16 29 C -0.06 -0.49 8.48 -38.48 -0.33 -0.82 16 30 C 0.12 1.70 6.14 -2.51 -0.02 1.68 16 31 H 0.04 0.48 7.38 -51.93 -0.38 0.09 16 32 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.36 7.89 5.66 -40.82 -0.23 7.65 16 35 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 36 H 0.09 0.57 8.12 -51.93 -0.42 0.15 16 37 H 0.08 0.69 8.04 -51.93 -0.42 0.27 16 38 H 0.08 0.46 6.67 -51.93 -0.35 0.12 16 39 H 0.08 0.45 6.80 -51.93 -0.35 0.09 16 40 H 0.18 1.83 7.65 -52.48 -0.40 1.43 16 41 H 0.17 1.17 8.06 -52.49 -0.42 0.75 16 42 H 0.16 0.62 8.06 -52.49 -0.42 0.20 16 43 H 0.14 0.45 8.06 -52.49 -0.42 0.03 16 44 H 0.18 1.05 2.89 -54.45 -0.16 0.89 16 45 H 0.08 1.26 8.03 -51.93 -0.42 0.84 16 46 H 0.08 1.41 8.09 -51.93 -0.42 0.99 16 LS Contribution 374.29 15.07 5.64 5.64 Total: -1.00 -34.44 374.29 -9.02 -43.46 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -6.09 Total: 5.43 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: -3.65 Total: -0.75 kcal Atomic # 7 Polarization: -61.66 SS G_CDS: -0.30 Total: -61.96 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.09 Total: -8.96 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.71 Total: 17.14 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.44 -9.02 -43.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724537659.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.019 kcal (2) G-P(sol) polarization free energy of solvation -34.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds