Wall clock time and date at job start Sat Apr 11 2020 06:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.47064 * 2 1 4 4 N 1.46491 * 109.47269 * 120.00715 * 2 1 3 5 5 C 1.36943 * 119.99852 * 274.71913 * 4 2 1 6 6 H 1.08004 * 119.99794 * 0.02562 * 5 4 2 7 7 C 1.38815 * 119.99988 * 179.97438 * 5 4 2 8 8 N 1.31617 * 119.99562 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 120.00067 * 0.02562 * 7 5 4 10 10 H 1.48509 * 109.47058 * 90.00072 * 9 7 5 11 11 H 1.48494 * 109.46999 * 209.99621 * 9 7 5 12 12 H 1.48499 * 109.47346 * 330.00052 * 9 7 5 13 13 C 1.53002 * 109.46608 * 240.00436 * 2 1 3 14 14 H 1.08996 * 110.88815 * 299.29781 * 13 2 1 15 15 C 1.55160 * 111.00631 * 63.18091 * 13 2 1 16 16 C 1.54322 * 102.94152 * 153.57721 * 15 13 2 17 17 N 1.47029 * 107.27129 * 337.80374 * 16 15 13 18 18 C 1.34771 * 125.64424 * 178.97410 * 17 16 15 19 19 O 1.21554 * 119.99734 * 175.02573 * 18 17 16 20 20 C 1.47859 * 120.00541 * 355.02555 * 18 17 16 21 21 C 1.40640 * 120.26676 * 187.79282 * 20 18 17 22 22 N 1.30845 * 121.66171 * 179.97438 * 21 20 18 23 23 C 1.33588 * 121.58552 * 0.02562 * 22 21 20 24 24 C 1.40645 * 121.63032 * 180.02562 * 23 22 21 25 25 N 1.31157 * 120.03618 * 179.97438 * 24 23 22 26 26 C 1.32489 * 122.89106 * 0.02562 * 25 24 23 27 27 C 1.36316 * 121.71670 * 359.97438 * 26 25 24 28 28 C 1.40601 * 118.64751 * 359.97438 * 27 26 25 29 29 C 1.38993 * 120.26011 * 7.52124 * 20 18 17 30 30 C 1.47460 * 108.72027 * 358.98022 * 17 16 15 31 31 H 1.09002 * 109.47128 * 59.99288 * 1 2 3 32 32 H 1.08999 * 109.47064 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46310 * 299.99674 * 1 2 3 34 34 H 0.96998 * 120.00846 * 94.99639 * 4 2 1 35 35 H 0.97004 * 119.99948 * 180.02562 * 8 7 5 36 36 H 1.09001 * 110.71834 * 271.93595 * 15 13 2 37 37 H 1.08993 * 110.71810 * 35.03085 * 15 13 2 38 38 H 1.09003 * 109.88753 * 97.22352 * 16 15 13 39 39 H 1.09003 * 109.88242 * 218.23217 * 16 15 13 40 40 H 1.08006 * 119.16309 * 0.02562 * 21 20 18 41 41 H 1.07993 * 119.97985 * 359.95241 * 24 23 22 42 42 H 1.08002 * 119.13945 * 179.97438 * 26 25 24 43 43 H 1.07993 * 120.67780 * 180.02562 * 27 26 25 44 44 H 1.08005 * 121.11040 * 359.97438 * 29 20 18 45 45 H 1.09003 * 110.34742 * 265.24617 * 30 17 16 46 46 H 1.09005 * 110.40458 * 142.91451 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 2.1547 -0.0063 2.3743 6 1 1.9017 1.0426 2.4218 7 6 2.6169 -0.6609 3.5077 8 7 2.7473 -0.0031 4.6403 9 14 3.0537 -2.4752 3.4256 10 1 4.4853 -2.6236 3.0593 11 1 2.8143 -3.1024 4.7501 12 1 2.2092 -3.1419 2.4022 13 6 2.0399 -0.7212 -1.2493 14 1 1.6996 -1.7565 -1.2665 15 6 1.6091 0.0273 -2.5384 16 6 2.7007 -0.3745 -3.5525 17 7 3.8814 -0.7903 -2.7812 18 6 5.0432 -1.2331 -3.3013 19 8 5.9867 -1.4650 -2.5708 20 6 5.1702 -1.4369 -4.7602 21 6 6.3179 -2.0510 -5.2929 22 7 6.4586 -2.2452 -6.5792 23 6 5.5184 -1.8691 -7.4506 24 6 5.6684 -2.0780 -8.8333 25 7 4.7251 -1.6966 -9.6610 26 6 3.6083 -1.1092 -9.2575 27 6 3.3649 -0.8608 -7.9394 28 6 4.3310 -1.2428 -6.9920 29 6 4.1538 -1.0282 -5.6156 30 6 3.5841 -0.6427 -1.3445 31 1 -0.3633 0.5140 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3632 0.5138 0.8900 34 1 2.2491 -1.6319 1.1525 35 1 3.0707 -0.4604 5.4323 36 1 0.6287 -0.3125 -2.8722 37 1 1.6075 1.1051 -2.3761 38 1 2.3489 -1.2031 -4.1672 39 1 2.9498 0.4770 -4.1859 40 1 7.1025 -2.3709 -4.6232 41 1 6.5609 -2.5523 -9.2138 42 1 2.8714 -0.8195 -9.9921 43 1 2.4484 -0.3812 -7.6292 44 1 3.2591 -0.5583 -5.2347 45 1 3.9380 0.3222 -0.9813 46 1 4.0408 -1.4534 -0.7767 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724537659.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:13 Heat of formation + Delta-G solvation = 48.117722 kcal Electronic energy + Delta-G solvation = -28746.374230 eV Core-core repulsion = 24829.267088 eV Total energy + Delta-G solvation = -3917.107141 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.49400 -41.23287 -39.42274 -38.67352 -37.08362 -35.15941 -34.25155 -32.99082 -32.21831 -31.52473 -30.46484 -29.66007 -26.85113 -25.91472 -25.49628 -24.38714 -23.83946 -22.69763 -21.36256 -21.28394 -19.97732 -19.49598 -18.68917 -18.24568 -17.61423 -17.24568 -16.76879 -16.67575 -16.16032 -16.02007 -15.72568 -15.42472 -15.21454 -15.00859 -14.70193 -14.57927 -14.42950 -14.25594 -13.96907 -13.77731 -13.69217 -13.63866 -13.42753 -13.24586 -12.93208 -12.46321 -12.38490 -12.11154 -11.97625 -11.90305 -11.71644 -11.69317 -11.47447 -11.32952 -10.98701 -10.97185 -10.53633 -10.48612 -9.81642 -9.54914 -9.29028 -8.01263 -5.32422 -1.08933 -0.64966 0.62214 1.34939 1.35147 1.39309 1.44668 1.69329 2.10784 2.47895 2.92640 2.93200 3.12167 3.25756 3.31672 3.39439 3.48051 3.50656 3.59117 3.67298 3.77928 3.88846 4.02284 4.19752 4.22935 4.27584 4.33651 4.41773 4.51837 4.59304 4.62894 4.63462 4.81117 4.82431 4.84277 4.91669 4.94839 5.04129 5.10264 5.19267 5.21221 5.29996 5.42278 5.49824 5.65192 5.81175 6.23631 6.29555 6.51972 6.85392 6.87465 7.10788 7.88947 8.04196 9.20528 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020346 B = 0.002473 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.864386 B =11317.745252 C =12335.050485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.181 3.819 3 H 0.048 0.952 4 N -0.754 5.754 5 C -0.216 4.216 6 H 0.061 0.939 7 C -0.066 4.066 8 N -0.985 5.985 9 Si 0.945 3.055 10 H -0.289 1.289 11 H -0.298 1.298 12 H -0.249 1.249 13 C -0.097 4.097 14 H 0.088 0.912 15 C -0.113 4.113 16 C 0.074 3.926 17 N -0.606 5.606 18 C 0.568 3.432 19 O -0.578 6.578 20 C -0.176 4.176 21 C 0.172 3.828 22 N -0.476 5.476 23 C 0.060 3.940 24 C 0.147 3.853 25 N -0.482 5.482 26 C 0.063 3.937 27 C -0.117 4.117 28 C -0.099 4.099 29 C -0.030 4.030 30 C 0.117 3.883 31 H 0.086 0.914 32 H 0.050 0.950 33 H 0.027 0.973 34 H 0.362 0.638 35 H 0.255 0.745 36 H 0.122 0.878 37 H 0.092 0.908 38 H 0.107 0.893 39 H 0.109 0.891 40 H 0.169 0.831 41 H 0.181 0.819 42 H 0.192 0.808 43 H 0.190 0.810 44 H 0.214 0.786 45 H 0.059 0.941 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.801 -1.282 -32.758 33.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.074 3.926 3 H 0.066 0.934 4 N -0.397 5.397 5 C -0.347 4.347 6 H 0.079 0.921 7 C -0.257 4.257 8 N -0.636 5.636 9 Si 0.774 3.226 10 H -0.216 1.216 11 H -0.225 1.225 12 H -0.174 1.174 13 C -0.117 4.117 14 H 0.107 0.893 15 C -0.151 4.151 16 C -0.046 4.046 17 N -0.338 5.338 18 C 0.358 3.642 19 O -0.459 6.459 20 C -0.183 4.183 21 C -0.003 4.003 22 N -0.185 5.185 23 C -0.063 4.063 24 C -0.025 4.025 25 N -0.191 5.191 26 C -0.080 4.080 27 C -0.136 4.136 28 C -0.106 4.106 29 C -0.055 4.055 30 C -0.006 4.006 31 H 0.105 0.895 32 H 0.069 0.931 33 H 0.047 0.953 34 H 0.194 0.806 35 H 0.064 0.936 36 H 0.140 0.860 37 H 0.111 0.889 38 H 0.125 0.875 39 H 0.127 0.873 40 H 0.186 0.814 41 H 0.198 0.802 42 H 0.209 0.791 43 H 0.207 0.793 44 H 0.230 0.770 45 H 0.078 0.922 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.570 -1.718 -33.664 33.897 hybrid contribution 0.320 -0.641 2.509 2.609 sum -3.250 -2.359 -31.155 31.413 Atomic orbital electron populations 1.22267 0.96405 1.01460 1.01301 1.20419 0.93447 0.94928 0.83826 0.93410 1.42880 1.80066 1.09393 1.07403 1.19010 1.34106 0.94269 0.87325 0.92139 1.25406 1.02939 1.01855 0.95501 1.69866 1.55154 1.37403 1.01225 0.85550 0.78203 0.81892 0.76974 1.21588 1.22544 1.17379 1.22571 0.91997 1.01294 0.95859 0.89321 1.22800 0.99283 1.01782 0.91262 1.23019 0.84552 1.01474 0.95551 1.48488 1.13634 1.63203 1.08481 1.18033 0.81551 0.77094 0.87545 1.90811 1.39061 1.53795 1.62271 1.20836 0.98523 1.05814 0.93100 1.23166 0.95294 0.90624 0.91205 1.67977 1.29396 1.18272 1.02826 1.20433 0.91692 0.97845 0.96340 1.23294 0.98079 0.94743 0.86368 1.67502 1.02296 1.09539 1.39771 1.22939 0.94314 0.94771 0.95930 1.22424 0.99887 0.98601 0.92734 1.19232 0.96087 0.99970 0.95301 1.23782 0.99197 0.91545 0.90945 1.22181 0.96970 1.01006 0.80421 0.89504 0.93134 0.95346 0.80564 0.93616 0.85979 0.88948 0.87526 0.87299 0.81435 0.80207 0.79085 0.79313 0.77045 0.92227 0.93335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.17 9.31 71.98 0.67 -3.50 16 2 C 0.18 5.69 2.40 45.00 0.11 5.80 16 3 H 0.05 1.61 8.07 -2.39 -0.02 1.59 16 4 N -0.75 -32.72 4.70 -322.94 -1.52 -34.24 16 5 C -0.22 -11.87 10.41 84.03 0.87 -11.00 16 6 H 0.06 3.63 8.06 -2.91 -0.02 3.61 16 7 C -0.07 -3.87 5.50 84.86 0.47 -3.41 16 8 N -0.99 -63.40 13.97 21.65 0.30 -63.09 16 9 Si 0.95 46.26 27.73 68.60 1.90 48.16 16 10 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 11 H -0.30 -14.87 7.11 99.48 0.71 -14.16 16 12 H -0.25 -10.86 6.52 99.48 0.65 -10.21 16 13 C -0.10 -2.20 2.63 -9.40 -0.02 -2.23 16 14 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 15 C -0.11 -1.27 5.44 31.78 0.17 -1.10 16 16 C 0.07 0.75 4.87 86.73 0.42 1.18 16 17 N -0.61 -13.46 3.33 -819.82 -2.73 -16.19 16 18 C 0.57 15.25 7.81 86.79 0.68 15.93 16 19 O -0.58 -21.23 16.67 -3.89 -0.06 -21.30 16 20 C -0.18 -3.61 5.89 -19.96 -0.12 -3.73 16 21 C 0.17 3.90 10.73 85.43 0.92 4.81 16 22 N -0.48 -10.59 10.33 -187.60 -1.94 -12.52 16 23 C 0.06 1.12 6.62 40.36 0.27 1.39 16 24 C 0.15 2.43 11.25 85.38 0.96 3.39 16 25 N -0.48 -7.34 10.28 -195.39 -2.01 -9.35 16 26 C 0.06 0.58 11.08 84.15 0.93 1.51 16 27 C -0.12 -0.82 9.88 22.40 0.22 -0.60 16 28 C -0.10 -1.35 5.75 -21.27 -0.12 -1.48 16 29 C -0.03 -0.38 8.48 22.98 0.19 -0.18 16 30 C 0.12 3.34 6.14 86.85 0.53 3.87 16 31 H 0.09 1.56 7.38 -2.39 -0.02 1.54 16 32 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.36 15.51 5.66 -92.71 -0.52 14.99 16 35 H 0.25 15.78 8.31 -92.71 -0.77 15.01 16 36 H 0.12 0.64 8.12 -2.39 -0.02 0.62 16 37 H 0.09 0.98 8.04 -2.39 -0.02 0.96 16 38 H 0.11 0.53 6.67 -2.39 -0.02 0.51 16 39 H 0.11 0.51 6.80 -2.39 -0.02 0.50 16 40 H 0.17 3.89 7.65 -2.91 -0.02 3.87 16 41 H 0.18 2.43 8.06 -2.91 -0.02 2.40 16 42 H 0.19 0.46 8.06 -2.91 -0.02 0.44 16 43 H 0.19 -0.35 8.06 -2.91 -0.02 -0.38 16 44 H 0.21 1.08 2.89 -4.75 -0.01 1.06 16 45 H 0.06 1.92 8.03 -2.39 -0.02 1.90 16 46 H 0.05 1.71 8.09 -2.38 -0.02 1.69 16 Total: -1.00 -82.92 374.29 1.54 -81.38 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: 0.43 Total: 16.50 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: 7.16 Total: 10.65 kcal Atomic # 7 Polarization: -127.51 SS G_CDS: -7.89 Total: -135.39 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: -0.06 Total: -21.30 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 1.90 Total: 48.16 kcal Total: -82.92 1.54 -81.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724537659.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.498 kcal (2) G-P(sol) polarization free energy of solvation -82.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds