Wall clock time and date at job start Sat Apr 11 2020 06:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47145 * 2 1 4 4 C 1.53006 * 109.47065 * 240.00872 * 2 1 3 5 5 N 1.46898 * 109.47206 * 184.99822 * 4 2 1 6 6 C 1.46901 * 110.99917 * 293.95173 * 5 4 2 7 7 C 1.46898 * 110.99885 * 169.99765 * 5 4 2 8 8 C 1.53008 * 109.47145 * 189.99975 * 7 5 4 9 9 C 1.50693 * 109.47313 * 180.02562 * 8 7 5 10 10 C 1.35317 * 126.12447 * 84.68829 * 9 8 7 11 11 C 1.39875 * 107.91711 * 179.90268 * 10 9 8 12 12 N 1.30834 * 108.20067 * 0.36989 * 11 10 9 13 13 N 1.34949 * 126.12622 * 265.00178 * 9 8 7 14 14 C 1.46500 * 126.03883 * 359.94234 * 13 9 8 15 15 N 1.46497 * 109.47313 * 120.00897 * 2 1 3 16 16 C 1.34777 * 119.99525 * 274.99614 * 15 2 1 17 17 O 1.21283 * 120.00463 * 0.02562 * 16 15 2 18 18 C 1.50700 * 119.99675 * 179.72583 * 16 15 2 19 19 S 1.80997 * 109.47151 * 180.27780 * 18 16 15 20 20 C 1.76196 * 100.00314 * 179.97438 * 19 18 16 21 21 H 1.08005 * 120.00018 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00626 * 179.97438 * 20 19 18 23 23 N 1.31633 * 119.99674 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00584 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.46793 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47282 * 119.99523 * 24 22 20 27 27 H 1.48500 * 109.47237 * 240.00020 * 24 22 20 28 28 H 1.08998 * 109.46617 * 299.99415 * 1 2 3 29 29 H 1.09003 * 109.47371 * 59.99288 * 1 2 3 30 30 H 1.09002 * 109.46839 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46872 * 304.99946 * 4 2 1 32 32 H 1.08994 * 109.47319 * 64.99922 * 4 2 1 33 33 H 1.09005 * 109.47141 * 60.00065 * 6 5 4 34 34 H 1.08999 * 109.46832 * 179.97438 * 6 5 4 35 35 H 1.08991 * 109.47254 * 299.99951 * 6 5 4 36 36 H 1.08993 * 109.47449 * 310.00041 * 7 5 4 37 37 H 1.08998 * 109.47195 * 70.00560 * 7 5 4 38 38 H 1.09000 * 109.46643 * 300.00430 * 8 7 5 39 39 H 1.09007 * 109.46649 * 59.99956 * 8 7 5 40 40 H 1.07997 * 126.04159 * 0.03512 * 10 9 8 41 41 H 1.08001 * 125.89548 * 180.13642 * 11 10 9 42 42 H 1.08996 * 109.47049 * 90.00211 * 14 13 9 43 43 H 1.08999 * 109.47050 * 210.00055 * 14 13 9 44 44 H 1.09001 * 109.46896 * 329.99589 * 14 13 9 45 45 H 0.97000 * 120.00580 * 95.00360 * 15 2 1 46 46 H 1.09009 * 109.47352 * 300.27556 * 18 16 15 47 47 H 1.08998 * 109.47585 * 60.27844 * 18 16 15 48 48 H 0.97003 * 120.00297 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 7 3.5040 -0.8265 -1.1906 6 6 4.1310 0.4995 -1.2721 7 6 4.0107 -1.7141 -2.2458 8 6 5.4948 -1.9977 -2.0047 9 6 6.0147 -2.9078 -3.0874 10 6 6.4618 -2.5240 -4.3056 11 6 6.8536 -3.6723 -5.0015 12 7 6.6416 -4.7089 -4.2319 13 7 6.1123 -4.2520 -3.0181 14 6 5.7322 -5.0859 -1.8752 15 7 2.0184 -0.6908 1.1960 16 6 2.1472 -0.0185 2.3570 17 8 1.8583 1.1582 2.4118 18 6 2.6437 -0.7305 3.5889 19 16 2.6984 0.4307 4.9762 20 6 3.2947 -0.6363 6.2451 21 1 3.5050 -1.6725 6.0248 22 6 3.4953 -0.1451 7.5277 23 7 3.2404 1.1182 7.7959 24 14 4.1282 -1.2762 8.8729 25 1 4.3356 -2.6378 8.3176 26 1 5.4161 -0.7524 9.3947 27 1 3.1355 -1.3377 9.9756 28 1 -0.3632 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6054 -1.7196 -1.2954 32 1 1.7517 -0.1581 -2.1370 33 1 3.7911 1.1140 -0.4384 34 1 5.2147 0.3924 -1.2259 35 1 3.8524 0.9760 -2.2119 36 1 3.4545 -2.6513 -2.2304 37 1 3.8857 -1.2334 -3.2160 38 1 6.0509 -1.0604 -2.0201 39 1 5.6198 -2.4785 -1.0343 40 1 6.5099 -1.5101 -4.6743 41 1 7.2575 -3.6989 -6.0028 42 1 4.6876 -5.3814 -1.9725 43 1 6.3608 -5.9761 -1.8500 44 1 5.8657 -4.5208 -0.9528 45 1 2.2492 -1.6319 1.1524 46 1 1.9698 -1.5528 3.8298 47 1 3.6437 -1.1227 3.4038 48 1 3.3802 1.4615 8.6923 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733034368.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:35 Heat of formation + Delta-G solvation = 15.565445 kcal Electronic energy + Delta-G solvation = -26775.249275 eV Core-core repulsion = 22992.174512 eV Total energy + Delta-G solvation = -3783.074763 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.16630 -40.74853 -38.92555 -36.24225 -34.56317 -34.33992 -33.40350 -32.38320 -29.94350 -29.33661 -28.16018 -27.63358 -27.56319 -25.81956 -22.87012 -22.11314 -21.95017 -21.28657 -20.52994 -19.79595 -17.92186 -17.69198 -17.27520 -16.86183 -16.80008 -16.38342 -16.25781 -16.14180 -15.79103 -15.33532 -15.16232 -14.83042 -14.60759 -14.54167 -14.25873 -13.90179 -13.81115 -13.59457 -13.39472 -13.20970 -13.15884 -13.12627 -13.06575 -12.90159 -12.78772 -12.68557 -12.55103 -12.41475 -11.90519 -11.70259 -11.62382 -11.51823 -11.13986 -10.81564 -10.22610 -10.22069 -9.95343 -9.45463 -9.30120 -8.62721 -8.32723 -6.09662 0.90851 1.30504 1.42206 1.50056 1.61147 1.66581 1.75700 1.89754 2.28703 2.41511 2.85681 3.01338 3.37214 3.72504 3.77339 3.81224 3.97133 4.07315 4.14082 4.21018 4.34366 4.35973 4.39963 4.42867 4.48369 4.51291 4.56971 4.59617 4.63932 4.68727 4.73949 4.80064 4.81862 4.84120 4.92740 5.00909 5.09439 5.18840 5.30747 5.31183 5.44160 5.64636 5.75323 6.02468 6.07810 6.14762 6.22159 6.69023 6.77203 7.08819 7.41361 8.76631 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.011296 B = 0.002289 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2478.119593 B =12228.960783 C =13988.342087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.146 3.854 3 H 0.062 0.938 4 C 0.057 3.943 5 N -0.544 5.544 6 C 0.020 3.980 7 C 0.073 3.927 8 C -0.050 4.050 9 C 0.088 3.912 10 C -0.287 4.287 11 C 0.039 3.961 12 N -0.341 5.341 13 N -0.379 5.379 14 C 0.090 3.910 15 N -0.691 5.691 16 C 0.536 3.464 17 O -0.572 6.572 18 C -0.127 4.127 19 S -0.153 6.153 20 C -0.543 4.543 21 H 0.082 0.918 22 C 0.012 3.988 23 N -0.912 5.912 24 Si 0.998 3.002 25 H -0.256 1.256 26 H -0.274 1.274 27 H -0.275 1.275 28 H 0.033 0.967 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.100 0.900 32 H 0.063 0.937 33 H 0.049 0.951 34 H 0.077 0.923 35 H 0.037 0.963 36 H 0.080 0.920 37 H 0.043 0.957 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.160 0.840 41 H 0.204 0.796 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.104 0.896 45 H 0.414 0.586 46 H 0.105 0.895 47 H 0.106 0.894 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.154 -11.293 -26.760 29.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.041 3.959 3 H 0.080 0.920 4 C -0.072 4.072 5 N -0.268 5.268 6 C -0.128 4.128 7 C -0.055 4.055 8 C -0.089 4.089 9 C -0.040 4.040 10 C -0.316 4.316 11 C -0.146 4.146 12 N -0.163 5.163 13 N -0.161 5.161 14 C -0.051 4.051 15 N -0.344 5.344 16 C 0.322 3.678 17 O -0.451 6.451 18 C -0.278 4.278 19 S 0.075 5.925 20 C -0.691 4.691 21 H 0.100 0.900 22 C -0.193 4.193 23 N -0.548 5.548 24 Si 0.820 3.180 25 H -0.180 1.180 26 H -0.200 1.200 27 H -0.200 1.200 28 H 0.052 0.948 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.119 0.881 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.095 0.905 35 H 0.056 0.944 36 H 0.099 0.901 37 H 0.061 0.939 38 H 0.113 0.887 39 H 0.106 0.894 40 H 0.177 0.823 41 H 0.221 0.779 42 H 0.105 0.895 43 H 0.108 0.892 44 H 0.123 0.877 45 H 0.251 0.749 46 H 0.123 0.877 47 H 0.124 0.876 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.833 -10.817 -25.912 28.139 hybrid contribution 0.557 -0.639 0.124 0.857 sum 2.390 -11.457 -25.788 28.319 Atomic orbital electron populations 1.22115 0.94444 1.03074 1.02129 1.20995 0.94067 0.96681 0.84133 0.92012 1.22400 0.87367 1.02061 0.95325 1.61875 1.05477 1.12001 1.47421 1.22445 1.00508 0.89694 1.00158 1.21935 0.94016 0.97105 0.92462 1.20247 0.95850 0.97848 0.94971 1.21314 1.00143 0.84703 0.97881 1.21555 1.14021 1.00872 0.95175 1.24303 0.99316 0.90128 1.00843 1.77317 1.21007 1.24641 0.93293 1.48807 1.49154 1.05165 1.13016 1.22121 1.02279 0.95728 0.84939 1.45581 1.66654 1.14388 1.07759 1.19947 0.76710 0.86505 0.84687 1.90678 1.51199 1.17848 1.85338 1.23344 1.05296 1.02988 0.96158 1.85561 1.86888 1.17470 1.02617 1.23230 1.50751 0.98423 0.96688 0.90020 1.26124 0.95159 0.97203 1.00791 1.70195 1.47055 1.15490 1.22092 0.84916 0.77810 0.78270 0.77016 1.17992 1.19989 1.20010 0.94808 0.89891 0.90673 0.88143 0.91898 0.93255 0.90471 0.94448 0.90132 0.93922 0.88744 0.89406 0.82261 0.77911 0.89464 0.89240 0.87729 0.74889 0.87670 0.87594 0.92074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.98 9.48 71.98 0.68 -2.30 16 2 C 0.15 2.94 2.35 44.99 0.11 3.05 16 3 H 0.06 1.61 6.23 -2.38 -0.01 1.59 16 4 C 0.06 0.71 4.52 86.31 0.39 1.10 16 5 N -0.54 -7.39 4.49 -922.47 -4.14 -11.53 16 6 C 0.02 0.32 9.12 127.69 1.17 1.48 16 7 C 0.07 0.78 4.94 86.31 0.43 1.20 16 8 C -0.05 -0.58 5.43 29.85 0.16 -0.41 16 9 C 0.09 1.34 6.18 41.40 0.26 1.60 16 10 C -0.29 -4.40 10.72 21.99 0.24 -4.16 16 11 C 0.04 0.64 12.03 85.24 1.03 1.67 16 12 N -0.34 -7.14 12.57 -57.02 -0.72 -7.85 16 13 N -0.38 -6.49 4.01 -356.04 -1.43 -7.92 16 14 C 0.09 0.94 11.27 127.77 1.44 2.38 16 15 N -0.69 -16.44 4.80 -442.52 -2.12 -18.56 16 16 C 0.54 19.27 7.81 87.66 0.68 19.95 16 17 O -0.57 -26.06 15.53 -3.04 -0.05 -26.11 16 18 C -0.13 -4.96 6.16 71.24 0.44 -4.52 16 19 S -0.15 -8.45 20.57 -56.49 -1.16 -9.61 16 20 C -0.54 -30.93 9.50 67.95 0.65 -30.28 16 21 H 0.08 4.33 7.80 -2.91 -0.02 4.30 16 22 C 0.01 0.67 5.49 84.86 0.47 1.14 16 23 N -0.91 -56.04 13.22 21.65 0.29 -55.75 16 24 Si 1.00 43.52 29.55 68.60 2.03 45.54 16 25 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 26 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 27 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 28 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.10 0.91 7.93 -2.39 -0.02 0.89 16 32 H 0.06 0.67 8.12 -2.39 -0.02 0.66 16 33 H 0.05 1.07 6.58 -2.38 -0.02 1.06 16 34 H 0.08 1.12 6.30 -2.39 -0.02 1.10 16 35 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.08 0.78 7.93 -2.39 -0.02 0.76 16 37 H 0.04 0.46 8.12 -2.39 -0.02 0.44 16 38 H 0.09 1.07 6.47 -2.39 -0.02 1.06 16 39 H 0.09 1.01 6.95 -2.38 -0.02 0.99 16 40 H 0.16 1.82 8.06 -2.91 -0.02 1.80 16 41 H 0.20 2.06 8.06 -2.91 -0.02 2.04 16 42 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.10 0.77 6.98 -2.39 -0.02 0.76 16 45 H 0.41 7.46 8.60 -92.71 -0.80 6.66 16 46 H 0.11 3.73 8.14 -2.39 -0.02 3.71 16 47 H 0.11 3.78 8.14 -2.40 -0.02 3.76 16 48 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -81.04 408.66 0.98 -80.07 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: 0.16 Total: 19.84 kcal Atomic # 6 Polarization: -16.23 SS G_CDS: 8.12 Total: -8.11 kcal Atomic # 7 Polarization: -93.49 SS G_CDS: -8.12 Total: -101.62 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -0.05 Total: -26.11 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 16 Polarization: -8.45 SS G_CDS: -1.16 Total: -9.61 kcal Total: -81.04 0.98 -80.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733034368.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.634 kcal (2) G-P(sol) polarization free energy of solvation -81.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds